source: branches/4.2/components/bio-formats/src/loci/formats/in @ 6486

Name Size Rev Age Author Last Change
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AliconaReader.java 8.2 KB 6376   10 years melissa Updated remaining readers to use enumeration handlers.
AmiraReader.java 14.6 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
AnalyzeReader.java 9.5 KB 6301   10 years melissa Added 'boolean hasCompanionFiles()' to IFormatReader. See #438.
APLReader.java 10.4 KB 6301   10 years melissa Added 'boolean hasCompanionFiles()' to IFormatReader. See #438.
APNGReader.java 8.6 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
ARFReader.java 5.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
AVIReader.java 17.9 KB 6430   10 years melissa * Updated OMEXMLMetadataImpl based on  ome-xml:r618. * Fixed a bunch of …
BaseTiffReader.java 16.1 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
BDReader.java 17.3 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
BIFormatReader.java 2.6 KB 6141   10 years curtis Use generics where appropriate; fix miscellaneous warnings and issues.
BioRadGelReader.java 5.3 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
BioRadReader.java 38.8 KB 6376   10 years melissa Updated remaining readers to use enumeration handlers.
BMPReader.java 8.5 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
BurleighReader.java 5.6 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
CellomicsReader.java 5.4 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
DefaultMetadataOptions.java 1.8 KB 6069   10 years callan A scaffold to support metadata configurability of readers.
DeltavisionReader.java 36.5 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
DicomReader.java 75.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
EPSReader.java 8.6 KB 6294   10 years melissa Added API for tiled image and multi-file export (see #413 and #486). …
FakeReader.java 13.7 KB 6477   10 years curtis Backport Bio-Formats and Importer bugfixes from trunk.
FEIReader.java 4.6 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
FitsReader.java 4.8 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
FlexReader.java 55.4 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
FluoviewReader.java 19.9 KB 6405   10 years melissa Fixed Detector/DetectorSettings population to correspond to what the …
FV1000Reader.java 47.5 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
GatanDM2Reader.java 6.9 KB 6376   10 years melissa Updated remaining readers to use enumeration handlers.
GatanReader.java 14.0 KB 6376   10 years melissa Updated remaining readers to use enumeration handlers.
GelReader.java 6.6 KB 6406   10 years melissa Updated several TIFF-based readers to populate Image.Description more …
GIFReader.java 13.5 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
HISReader.java 8.0 KB 6376   10 years melissa Updated remaining readers to use enumeration handlers.
ICSReader.java 30.9 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
ImaconReader.java 6.6 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
ImageIOReader.java 3.9 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
ImarisHDFReader.java 13.8 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
ImarisReader.java 7.3 KB 6376   10 years melissa Updated remaining readers to use enumeration handlers.
ImarisTiffReader.java 5.5 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
ImprovisionTiffReader.java 7.7 KB 6406   10 years melissa Updated several TIFF-based readers to populate Image.Description more …
InCellReader.java 29.8 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
IPLabReader.java 12.1 KB 6395   10 years melissa Read tags into a byte array, so that non-String tags are preserved. See …
IPWReader.java 9.3 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
IvisionReader.java 10.1 KB 6376   10 years melissa Updated remaining readers to use enumeration handlers.
JEOLReader.java 5.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
JPEG2000Reader.java 5.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
JPEGReader.java 1.5 KB 4953   11 years melissa Switched licenses from GPL v3 or later to GPL v2 or later.
JPKReader.java 4.2 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
KhorosReader.java 5.2 KB 6392   10 years melissa Fixed LUT ordering bug. See  omero:2438.
L2DReader.java 11.0 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
LegacyND2Reader.java 6.7 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
LegacyQTReader.java 7.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
LeicaHandler.java 35.8 KB 6484   10 years melissa Updated Channel -> Laser linkage rule in accordance with r6076.
LeicaReader.java 46.0 KB 6486   10 years melissa Make sure that CoreMetadata.indexed is set correctly, regardless of the …
LEOReader.java 4.1 KB 6430   10 years melissa * Updated OMEXMLMetadataImpl based on  ome-xml:r618. * Fixed a bunch of …
LiFlimReader.java 17.3 KB 6370   10 years melissa Updated Deltavision and Flex readers to use …
LIFReader.java 11.5 KB 6303   10 years melissa Fixed bug that caused get*BitLookupTable() to return null if openBytes had …
LIMReader.java 3.9 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
loci_formats_in_LegacyND2Reader.cpp 10.6 KB 6026   10 years melissa Merging cleanup branch back into trunk.
loci_formats_in_LegacyND2Reader.h 5.1 KB 3498   12 years melissa Rewrote LegacyND2Reader to use our own native bindings.
MetadataLevel.java 1.3 KB 6074   10 years callan PIXELS_ONLY --> MINIMUM metadata level.
MetadataOptions.java 1.3 KB 6069   10 years callan A scaffold to support metadata configurability of readers.
MetamorphHandler.java 6.5 KB 6068   10 years melissa Catch NumberFormatException when parsing exposure times, and adjust SizeC …
MetamorphReader.java 43.6 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
MetamorphTiffReader.java 5.3 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
MIASReader.java 35.1 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
MicromanagerReader.java 16.9 KB 6376   10 years melissa Updated remaining readers to use enumeration handlers.
MINCReader.java 5.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
MinimalTiffReader.java 10.9 KB 6409   10 years melissa Several fixes to Leica LEI, ND2, and Perkin Elmer readers.
MNGReader.java 8.2 KB 6335   10 years melissa Moved SizeT population to prevent it from being 0. See  omero:2377.
MolecularImagingReader.java 5.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
MRCReader.java 6.8 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
MRWReader.java 7.4 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
NAFReader.java 5.8 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
NativeND2Reader.java 44.7 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
NativeQTReader.java 19.4 KB 6349   10 years melissa Fixed various bugs exposed by test suite.
ND2Reader.java 1.8 KB 5517   11 years melissa Added two new methods to IFormatReader: boolean isSingleFile(String) …
NiftiReader.java 13.9 KB 6301   10 years melissa Added 'boolean hasCompanionFiles()' to IFormatReader. See #438.
NikonReader.java 14.3 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
NikonTiffReader.java 9.9 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
NRRDReader.java 9.1 KB 6333   10 years melissa * Removed hopefully obsolete hack from RandomAccessInputStream.findString. …
OMETiffReader.java 21.3 KB 6459   10 years melissa Synced up export/MetadataConverter fixes between trunk and 4.2. OME-TIFF …
OMEXMLReader.java 13.5 KB 6306   10 years melissa Exported OME-XML files can now be read.
OpenlabRawReader.java 5.9 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
OpenlabReader.java 22.9 KB 6430   10 years melissa * Updated OMEXMLMetadataImpl based on  ome-xml:r618. * Fixed a bunch of …
OxfordInstrumentsReader.java 6.1 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
package.html 80 bytes 1351   14 years curtis Package descriptions for many packages.
PCIReader.java 11.4 KB 6376   10 years melissa Updated remaining readers to use enumeration handlers.
PCXReader.java 4.8 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
PerkinElmerReader.java 26.8 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
PGMReader.java 5.4 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
PhotoshopTiffReader.java 8.8 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
PictReader.java 18.8 KB 6334   10 years melissa * Prevent PICT reader from reporting width or height less than 0. * Fixd …
PrairieReader.java 13.6 KB 6376   10 years melissa Updated remaining readers to use enumeration handlers.
PSDReader.java 8.4 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
QTReader.java 1.8 KB 5517   11 years melissa Added two new methods to IFormatReader: boolean isSingleFile(String) …
QuesantReader.java 5.4 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
RHKReader.java 6.1 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
SBIGReader.java 6.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
ScanrReader.java 16.4 KB 6461   10 years melissa Fixed well ordering bug, courtesy of Rubén Muñoz.
SDTInfo.java 27.4 KB 5093   11 years curtis Fix a bunch of Eclipse warnings.
SDTReader.java 7.1 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
SeikoReader.java 3.5 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
SEQReader.java 5.2 KB 6190   10 years melissa * Updated remaining readers to respect MetadataOptions. * Added bounds …
SlidebookReader.java 19.7 KB 6376   10 years melissa Updated remaining readers to use enumeration handlers.
SMCameraReader.java 3.6 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
SVSReader.java 5.0 KB 6406   10 years melissa Updated several TIFF-based readers to populate Image.Description more …
TargaReader.java 7.5 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
TCSReader.java 16.7 KB 6430   10 years melissa * Updated OMEXMLMetadataImpl based on  ome-xml:r618. * Fixed a bunch of …
TiffDelegateReader.java 1.8 KB 6026   10 years melissa Merging cleanup branch back into trunk.
TiffJAIReader.java 6.2 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
TiffReader.java 12.3 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
TillVisionReader.java 14.8 KB 6376   10 years melissa Updated remaining readers to use enumeration handlers.
TopometrixReader.java 5.7 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
UBMReader.java 3.2 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
UnisokuReader.java 6.3 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
VGSAMReader.java 3.4 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
VisitechReader.java 8.8 KB 6301   10 years melissa Added 'boolean hasCompanionFiles()' to IFormatReader. See #438.
WATOPReader.java 4.8 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
ZeissLSMReader.java 64.1 KB 6483   10 years melissa Populate Laser.Model, if present. See  omero:2475.
ZeissZVIReader.java 55.5 KB 6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
ZipReader.java 3.7 KB 6121   10 years melissa Preliminary support for reading Zip files with multiple entries. Closes …
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