source: branches/4.2/components/bio-formats/src/loci/formats/in @ 6808

Name Size Rev Age Author Last Change
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AliconaReader.java 8.2 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
AmiraReader.java 14.7 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
AnalyzeReader.java 9.5 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
APLReader.java 10.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
APNGReader.java 8.6 KB 6495   10 years melissa Updated email address.
ARFReader.java 5.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
AVIReader.java 17.9 KB 6754   10 years melissa Fixed BGR correction when opening sub-images. See QA #2583.
BaseTiffReader.java 16.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
BDReader.java 17.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
BIFormatReader.java 2.6 KB 6141   10 years curtis Use generics where appropriate; fix miscellaneous warnings and issues.
BioRadGelReader.java 5.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
BioRadReader.java 39.0 KB 6681   10 years melissa Only populate Objective.NominalMagnification if the magnification is …
BMPReader.java 8.7 KB 6808   10 years melissa If a negative width or height is stored, use the absolute value instead …
BurleighReader.java 5.6 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
CellomicsReader.java 5.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
DefaultMetadataOptions.java 1.8 KB 6069   10 years callan A scaffold to support metadata configurability of readers.
DeltavisionReader.java 36.9 KB 6691   10 years melissa Backported r6689 to 4.2 branch.
DicomReader.java 75.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
EPSReader.java 8.6 KB 6495   10 years melissa Updated email address.
FakeReader.java 14.2 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
FEIReader.java 4.6 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
FitsReader.java 4.8 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
FlexReader.java 55.5 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
FluoviewReader.java 19.7 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
FV1000Reader.java 48.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
GatanDM2Reader.java 7.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
GatanReader.java 14.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
GelReader.java 6.6 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
GIFReader.java 13.6 KB 6487   10 years melissa Minor fixes to make metadata level tests pass.
HISReader.java 8.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ICSReader.java 30.6 KB 6710   10 years melissa * Fixed how ICS files with > 4 channels are read. * Fixed Channel …
ImaconReader.java 6.7 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ImageIOReader.java 3.9 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
ImarisHDFReader.java 13.8 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ImarisReader.java 7.3 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ImarisTiffReader.java 5.5 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ImprovisionTiffReader.java 7.7 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
InCellReader.java 29.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
IPLabReader.java 12.2 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
IPWReader.java 9.3 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
IvisionReader.java 10.2 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
JEOLReader.java 5.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
JPEG2000Reader.java 5.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
JPEGReader.java 1.5 KB 4953   11 years melissa Switched licenses from GPL v3 or later to GPL v2 or later.
JPKReader.java 4.2 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
KhorosReader.java 5.2 KB 6392   10 years melissa Fixed LUT ordering bug. See  omero:2438.
L2DReader.java 11.7 KB 6802   10 years melissa * Ignore missing L2D scans, instead of throwing an exception. * More …
LegacyND2Reader.java 6.7 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
LegacyQTReader.java 7.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
LeicaHandler.java 37.2 KB 6687   10 years melissa Fixed channel data is parsed from Leica LIF files that have had one or …
LeicaReader.java 46.8 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
LEOReader.java 4.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
LiFlimReader.java 17.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
LIFReader.java 11.6 KB 6534   10 years melissa Fixed a few issues with 16-bit LUTs.
LIMReader.java 3.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
loci_formats_in_LegacyND2Reader.cpp 10.6 KB 6026   10 years melissa Merging cleanup branch back into trunk.
loci_formats_in_LegacyND2Reader.h 5.1 KB 3498   12 years melissa Rewrote LegacyND2Reader to use our own native bindings.
MetadataLevel.java 1.3 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MetadataOptions.java 1.3 KB 6069   10 years callan A scaffold to support metadata configurability of readers.
MetamorphHandler.java 6.5 KB 6495   10 years melissa Updated email address.
MetamorphReader.java 44.5 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MetamorphTiffReader.java 5.3 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MIASReader.java 35.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MicromanagerReader.java 17.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MINCReader.java 5.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MinimalTiffReader.java 10.9 KB 6693   10 years melissa Fixed ArrayIndexOutOfBoundsException when opening sub-images from 16- and …
MNGReader.java 8.2 KB 6335   10 years melissa Moved SizeT population to prevent it from being 0. See  omero:2377.
MolecularImagingReader.java 5.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MRCReader.java 6.8 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MRWReader.java 7.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
NAFReader.java 5.8 KB 6495   10 years melissa Updated email address.
NativeND2Reader.java 44.9 KB 6800   10 years melissa Remove invalid characters from strings that will later be parsed into …
NativeQTReader.java 19.4 KB 6495   10 years melissa Updated email address.
ND2Reader.java 1.8 KB 5517   11 years melissa Added two new methods to IFormatReader: boolean isSingleFile(String) …
NiftiReader.java 13.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
NikonReader.java 14.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
NikonTiffReader.java 10.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
NRRDReader.java 9.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
OMETiffReader.java 21.9 KB 6706   10 years melissa Tweaked isThisType to automatically return false if the TIFF comment is an …
OMEXMLReader.java 14.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
OpenlabRawReader.java 5.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
OpenlabReader.java 22.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
OxfordInstrumentsReader.java 6.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
package.html 80 bytes 1351   14 years curtis Package descriptions for many packages.
PCIReader.java 11.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
PCXReader.java 4.8 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
PerkinElmerReader.java 26.8 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
PGMReader.java 5.4 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
PhotoshopTiffReader.java 8.8 KB 6794   10 years curtis Backport r6789 to 4.2 branch.
PictReader.java 18.8 KB 6334   10 years melissa * Prevent PICT reader from reporting width or height less than 0. * Fixd …
PrairieReader.java 13.6 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
PSDReader.java 8.4 KB 6767   10 years melissa Fixed a couple of silly Photoshop bugs.
QTReader.java 1.8 KB 5517   11 years melissa Added two new methods to IFormatReader: boolean isSingleFile(String) …
QuesantReader.java 5.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
RHKReader.java 6.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
SBIGReader.java 6.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ScanrReader.java 16.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
SDTInfo.java 27.5 KB 6665   10 years melissa Only overwrite the dimensions if the new values are sane.
SDTReader.java 7.1 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
SeikoReader.java 3.5 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
SEQReader.java 5.3 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
SlidebookReader.java 20.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
SMCameraReader.java 3.7 KB 6487   10 years melissa Minor fixes to make metadata level tests pass.
SVSReader.java 5.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
TargaReader.java 7.5 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
TCSReader.java 16.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
TextReader.java 12.5 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
TiffDelegateReader.java 1.8 KB 6026   10 years melissa Merging cleanup branch back into trunk.
TiffJAIReader.java 6.2 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
TiffReader.java 12.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
TillVisionReader.java 15.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
TopometrixReader.java 5.8 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
UBMReader.java 3.3 KB 6487   10 years melissa Minor fixes to make metadata level tests pass.
UnisokuReader.java 6.3 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
VGSAMReader.java 3.4 KB 6487   10 years melissa Minor fixes to make metadata level tests pass.
VisitechReader.java 9.6 KB 6553   10 years melissa Fixed a handful of core metadata and pixels offset bugs in Visitech …
WATOPReader.java 4.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ZeissLSMReader.java 64.7 KB 6765   10 years melissa Only populate Objective.NominalMagnification if the magnification stored …
ZeissZVIReader.java 55.7 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ZipReader.java 3.7 KB 6121   10 years melissa Preliminary support for reading Zip files with multiple entries. Closes …
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