source: branches/4.2/components/bio-formats/src/loci/formats/in @ 7001

Name Size Rev Age Author Last Change
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ZipReader.java 3.7 KB 6121   10 years melissa Preliminary support for reading Zip files with multiple entries. Closes …
ZeissZVIReader.java 57.4 KB 6910   9 years callan Merging commits (r6690, r6692, r6735, r6784, r6786) from Trunk with …
ZeissLSMReader.java 70.1 KB 6992   9 years melissa Merged recent Zeiss LSM changes to 4.2: r6697, r6713, and r6842.
WATOPReader.java 4.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
VisitechReader.java 9.6 KB 6553   10 years melissa Fixed a handful of core metadata and pixels offset bugs in Visitech …
VGSAMReader.java 3.4 KB 6487   10 years melissa Minor fixes to make metadata level tests pass.
VarianFDFReader.java 9.4 KB 6997   9 years melissa Merged new readers into 4.2: r6758, r6783, r6790, r6797, r6801, r6845.
UnisokuReader.java 6.3 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
UBMReader.java 3.3 KB 6487   10 years melissa Minor fixes to make metadata level tests pass.
TopometrixReader.java 5.8 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
TillVisionReader.java 15.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
TiffReader.java 12.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
TiffJAIReader.java 6.2 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
TiffDelegateReader.java 1.8 KB 6026   10 years melissa Merging cleanup branch back into trunk.
TextReader.java 12.5 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
TCSReader.java 16.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
TargaReader.java 7.5 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
SVSReader.java 5.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
SMCameraReader.java 3.7 KB 6487   10 years melissa Minor fixes to make metadata level tests pass.
SlidebookReader.java 20.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
SimplePCITiffReader.java 7.7 KB 6997   9 years melissa Merged new readers into 4.2: r6758, r6783, r6790, r6797, r6801, r6845.
SEQReader.java 5.3 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
SeikoReader.java 3.5 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
SDTReader.java 7.1 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
SDTInfo.java 27.5 KB 6665   10 years melissa Only overwrite the dimensions if the new values are sane.
ScanrReader.java 18.0 KB 6995   9 years melissa Merged recent ScanR changes: r6720, r6810, r6838, r6959, and r6967.
SBIGReader.java 6.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
RHKReader.java 6.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
QuesantReader.java 5.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
QTReader.java 1.8 KB 5517   10 years melissa Added two new methods to IFormatReader: boolean isSingleFile(String) …
PSDReader.java 8.4 KB 6767   10 years melissa Fixed a couple of silly Photoshop bugs.
PrairieReader.java 13.6 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
PictReader.java 18.8 KB 6334   10 years melissa * Prevent PICT reader from reporting width or height less than 0. * Fixd …
PhotoshopTiffReader.java 8.8 KB 6794   10 years curtis Backport r6789 to 4.2 branch.
PGMReader.java 5.4 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
PerkinElmerReader.java 26.8 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
PDSReader.java 8.5 KB 6997   9 years melissa Merged new readers into 4.2: r6758, r6783, r6790, r6797, r6801, r6845.
PCXReader.java 4.8 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
PCIReader.java 11.5 KB 6997   9 years melissa Merged new readers into 4.2: r6758, r6783, r6790, r6797, r6801, r6845.
package.html 80 bytes 1351   14 years curtis Package descriptions for many packages.
OxfordInstrumentsReader.java 6.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
OpenlabReader.java 22.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
OpenlabRawReader.java 5.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
OMEXMLReader.java 14.3 KB 6836   10 years melissa Fixed Image indexed passed to …
OMETiffReader.java 21.9 KB 6706   10 years melissa Tweaked isThisType to automatically return false if the TIFF comment is an …
NRRDReader.java 9.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
NikonTiffReader.java 10.1 KB 6910   9 years callan Merging commits (r6690, r6692, r6735, r6784, r6786) from Trunk with …
NikonReader.java 14.3 KB 6910   9 years callan Merging commits (r6690, r6692, r6735, r6784, r6786) from Trunk with …
NiftiReader.java 13.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ND2Reader.java 1.8 KB 5517   10 years melissa Added two new methods to IFormatReader: boolean isSingleFile(String) …
NativeQTReader.java 19.4 KB 6495   10 years melissa Updated email address.
NativeND2Reader.java 44.9 KB 6800   10 years melissa Remove invalid characters from strings that will later be parsed into …
NAFReader.java 5.8 KB 6495   10 years melissa Updated email address.
MRWReader.java 7.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MRCReader.java 6.8 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MolecularImagingReader.java 5.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MNGReader.java 8.2 KB 6335   10 years melissa Moved SizeT population to prevent it from being 0. See  omero:2377.
MinimalTiffReader.java 10.9 KB 6693   10 years melissa Fixed ArrayIndexOutOfBoundsException when opening sub-images from 16- and …
MINCReader.java 5.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MicromanagerReader.java 17.0 KB 6910   9 years callan Merging commits (r6690, r6692, r6735, r6784, r6786) from Trunk with …
MIASReader.java 35.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MetamorphTiffReader.java 5.3 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
MetamorphReader.java 44.7 KB 6918   9 years callan Merged r6917 and r6916 from Trunk.
MetamorphHandler.java 6.5 KB 6495   10 years melissa Updated email address.
MetadataOptions.java 1.3 KB 6069   10 years callan A scaffold to support metadata configurability of readers.
MetadataLevel.java 1.3 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
loci_formats_in_LegacyND2Reader.h 5.1 KB 3498   12 years melissa Rewrote LegacyND2Reader to use our own native bindings.
loci_formats_in_LegacyND2Reader.cpp 10.6 KB 6026   10 years melissa Merging cleanup branch back into trunk.
LIMReader.java 3.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
LIFReader.java 12.5 KB 6822   10 years melissa Prevent extra (Logical)Channel objects from being populated.
LiFlimReader.java 17.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
LEOReader.java 4.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
LeicaReader.java 47.0 KB 6910   9 years callan Merging commits (r6690, r6692, r6735, r6784, r6786) from Trunk with …
LeicaHandler.java 37.3 KB 6981   9 years melissa Only populate a channel's excitation wavelength if the wavelength is …
LegacyQTReader.java 7.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
LegacyND2Reader.java 6.7 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
L2DReader.java 11.7 KB 6802   10 years melissa * Ignore missing L2D scans, instead of throwing an exception. * More …
KhorosReader.java 5.2 KB 6392   10 years melissa Fixed LUT ordering bug. See  omero:2438.
JPKReader.java 4.2 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
JPEGReader.java 1.5 KB 4953   11 years melissa Switched licenses from GPL v3 or later to GPL v2 or later.
JPEG2000Reader.java 5.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
JEOLReader.java 5.0 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
IvisionReader.java 10.2 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
IPWReader.java 9.3 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
IPLabReader.java 12.3 KB 6910   9 years callan Merging commits (r6690, r6692, r6735, r6784, r6786) from Trunk with …
InCellReader.java 29.9 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ImprovisionTiffReader.java 10.5 KB 6983   9 years melissa Fixed various dimension ordering bugs in new multi-file Improvision TIFF …
ImarisTiffReader.java 5.5 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ImarisReader.java 7.3 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ImarisHDFReader.java 13.8 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ImageIOReader.java 3.9 KB 6230   10 years melissa Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
ImaconReader.java 6.7 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
ICSReader.java 31.0 KB 6910   9 years callan Merging commits (r6690, r6692, r6735, r6784, r6786) from Trunk with …
HISReader.java 8.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
GIFReader.java 13.6 KB 6487   10 years melissa Minor fixes to make metadata level tests pass.
GelReader.java 6.6 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
GatanReader.java 14.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
GatanDM2Reader.java 7.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
FV1000Reader.java 48.9 KB 6910   9 years callan Merging commits (r6690, r6692, r6735, r6784, r6786) from Trunk with …
FluoviewReader.java 19.7 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
FlexReader.java 55.5 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
FitsReader.java 4.8 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
FEITiffReader.java 7.8 KB 6997   9 years melissa Merged new readers into 4.2: r6758, r6783, r6790, r6797, r6801, r6845.
FEIReader.java 4.6 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
FakeReader.java 14.2 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
EPSReader.java 8.6 KB 6495   10 years melissa Updated email address.
Ecat7Reader.java 14.5 KB 6997   9 years melissa Merged new readers into 4.2: r6758, r6783, r6790, r6797, r6801, r6845.
DicomReader.java 75.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
DeltavisionReader.java 36.9 KB 6910   9 years callan Merging commits (r6690, r6692, r6735, r6784, r6786) from Trunk with …
DefaultMetadataOptions.java 1.8 KB 6069   10 years callan A scaffold to support metadata configurability of readers.
CellWorxReader.java 16.7 KB 6987   9 years melissa Parse scanner serial numbers from the plate log file.
CellomicsReader.java 5.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
BurleighReader.java 5.6 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
BMPReader.java 8.8 KB 6812   10 years melissa Reverse the order of the rows if a negative height was stored in the file. …
BioRadReader.java 39.3 KB 6910   9 years callan Merging commits (r6690, r6692, r6735, r6784, r6786) from Trunk with …
BioRadGelReader.java 5.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
BIFormatReader.java 2.6 KB 6141   10 years curtis Use generics where appropriate; fix miscellaneous warnings and issues.
BDReader.java 17.4 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
BaseTiffReader.java 16.1 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
AVIReader.java 17.9 KB 6754   10 years melissa Fixed BGR correction when opening sub-images. See QA #2583.
ARFReader.java 5.0 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
APNGReader.java 8.6 KB 6495   10 years melissa Updated email address.
APLReader.java 11.9 KB 6910   9 years callan Merging commits (r6690, r6692, r6735, r6784, r6786) from Trunk with …
AnalyzeReader.java 9.5 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
AmiraReader.java 14.7 KB 6991   9 years melissa Merged r6695 into 4.2.
AliconaReader.java 8.2 KB 6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
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