source: trunk/loci/formats/readers.txt @ 2319

Revision 2319, 3.5 KB checked in by curtis, 13 years ago (diff)

Some documentation updates.

  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
Line 
1#
2# readers.txt
3#
4
5# LOCI Bio-Formats package for reading and converting biological file formats.
6# Copyright (C) 2005-@year@ Melissa Linkert, Curtis Rueden, Chris Allan,
7# Eric Kjellman and Brian Loranger.
8#
9# This program is free software; you can redistribute it and/or modify
10# it under the terms of the GNU Library General Public License as published by
11# the Free Software Foundation; either version 2 of the License, or
12# (at your option) any later version.
13#
14# This program is distributed in the hope that it will be useful,
15# but WITHOUT ANY WARRANTY; without even the implied warranty of
16# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
17# GNU Library General Public License for more details.
18#
19# You should have received a copy of the GNU Library General Public License
20# along with this program; if not, write to the Free Software
21# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
22
23# This document is a configuration file identifying all file format readers
24# available to Bio-Formats, and the order in which they should be used.
25# Please do not edit unless you know what you are doing (see reader-guide.txt).
26
27# javax.imageio readers
28loci.formats.in.PNGReader         # png [javax.imageio]
29loci.formats.in.JPEGReader        # jpg [javax.imageio]
30
31# standalone readers with unique file extensions
32loci.formats.in.GIFReader         # gif
33loci.formats.in.BMPReader         # bmp
34loci.formats.in.DicomReader       # dcm, dicom
35loci.formats.in.BioRadReader      # pic
36loci.formats.in.IPLabReader       # ipl
37loci.formats.in.DeltavisionReader # dv, r3d
38loci.formats.in.MRCReader         # mrc
39loci.formats.in.GatanReader       # dm3
40loci.formats.in.ImarisReader      # ims
41loci.formats.in.OpenlabRawReader  # raw
42loci.formats.in.OMEXMLReader      # ome
43loci.formats.in.LIFReader         # lif
44loci.formats.in.AVIReader         # avi
45loci.formats.in.QTReader          # mov
46loci.formats.in.PictReader        # pict, pct
47loci.formats.in.SDTReader         # sdt
48loci.formats.in.EPSReader         # eps, epsi
49loci.formats.in.SlidebookReader   # sld
50loci.formats.in.AliconaReader     # al3d
51loci.formats.in.MNGReader         # mng
52
53# multi-extension messes
54loci.formats.in.ICSReader         # ics, ids
55loci.formats.in.OIFReader         # oif, various
56loci.formats.in.PerkinElmerReader # csv, htm, tim, zpo [TIFF+companion]
57
58# readers requiring third-party libraries
59loci.formats.in.ZeissZVIReader    # zvi [POIFS]
60loci.formats.in.OIBReader         # oib [POIFS]
61loci.formats.in.IPWReader         # ipw [POIFS]
62loci.formats.in.ND2Reader         # nd2, jp2 [JAI-ImageIO]
63
64# TIFF-based readers with unique file extensions
65loci.formats.in.MetamorphReader   # stk [TIFF]
66loci.formats.in.ZeissLSMReader    # lsm [TIFF]
67loci.formats.in.SEQReader         # seq [TIFF]
68loci.formats.in.GelReader         # gel [TIFF]
69loci.formats.in.ImarisTiffReader  # ims [TIFF]
70
71# TIFF-based readers with slow isThisType
72loci.formats.in.LeicaReader       # lei, tif [TIFF+companion; slow isThisType]
73loci.formats.in.NikonReader       # nef, tif [TIFF; slow isThisType]
74loci.formats.in.FluoviewReader    # tif [TIFF; slow isThisType]
75loci.formats.in.AndorReader       # tif [TIFF; slow isThisType]
76loci.formats.in.PrairieReader     # xml, cfg, tif
77
78# standard TIFF reader must go last (it accepts any TIFF)
79loci.formats.in.TiffReader        # tif, tiff
80
81# non-TIFF readers with slow isThisType
82loci.formats.in.OpenlabReader     # liff [slow isThisType]
83
84# if nothing else works, try ImageJ
85loci.formats.in.ImageJReader      # various [ImageJ]
Note: See TracBrowser for help on using the repository browser.