source: trunk/loci/formats/readers.txt @ 2944

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1#
2# readers.txt
3#
4
5# LOCI Bio-Formats package for reading and converting biological file formats.
6# Copyright (C) 2005-@year@ Melissa Linkert, Curtis Rueden, Chris Allan,
7# Eric Kjellman and Brian Loranger.
8#
9# This program is free software; you can redistribute it and/or modify
10# it under the terms of the GNU Library General Public License as published by
11# the Free Software Foundation; either version 2 of the License, or
12# (at your option) any later version.
13#
14# This program is distributed in the hope that it will be useful,
15# but WITHOUT ANY WARRANTY; without even the implied warranty of
16# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
17# GNU Library General Public License for more details.
18#
19# You should have received a copy of the GNU Library General Public License
20# along with this program; if not, write to the Free Software
21# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
22
23# This document is a configuration file identifying all file format readers
24# available to Bio-Formats, and the order in which they should be used.
25# Please do not edit unless you know what you are doing (see reader-guide.txt).
26
27# javax.imageio readers
28loci.formats.in.PNGReader          # png [javax.imageio]
29loci.formats.in.JPEGReader         # jpg, jpeg [javax.imageio]
30
31# standalone readers with unique file extensions
32loci.formats.in.PGMReader          # pgm
33loci.formats.in.FitsReader         # fits
34loci.formats.in.GIFReader          # gif
35loci.formats.in.BMPReader          # bmp
36loci.formats.in.DicomReader        # dcm, dicom
37loci.formats.in.BioRadReader       # pic
38loci.formats.in.IPLabReader        # ipl
39loci.formats.in.DeltavisionReader  # dv, r3d
40loci.formats.in.MRCReader          # mrc
41loci.formats.in.GatanReader        # dm3
42loci.formats.in.ImarisReader       # ims
43loci.formats.in.OpenlabRawReader   # raw
44loci.formats.in.OMEXMLReader       # ome
45loci.formats.in.LIFReader          # lif
46loci.formats.in.AVIReader          # avi
47loci.formats.in.QTReader           # mov
48loci.formats.in.PictReader         # pict, pct
49loci.formats.in.SDTReader          # sdt
50loci.formats.in.EPSReader          # eps, epsi
51loci.formats.in.SlidebookReader    # sld
52loci.formats.in.AliconaReader      # al3d
53loci.formats.in.MNGReader          # mng
54loci.formats.in.NRRDReader         # nrrd, nhdr
55loci.formats.in.KhorosReader       # xv
56loci.formats.in.VisitechReader     # html, xys
57
58# multi-extension messes
59loci.formats.in.ICSReader          # ics, ids
60loci.formats.in.OIFReader          # oif, various
61loci.formats.in.PerkinElmerReader  # rec, ano, csv, htm, tim, zpo, 2, 3, 4, ...
62
63# readers requiring third-party libraries
64loci.formats.in.ZeissZVIReader     # zvi [POIFS]
65loci.formats.in.OIBReader          # oib [POIFS]
66loci.formats.in.IPWReader          # ipw [POIFS]
67loci.formats.in.ND2Reader          # nd2, jp2 [JAI-ImageIO]
68
69# TIFF-based readers with unique file extensions
70loci.formats.in.MetamorphReader    # stk
71loci.formats.in.ZeissLSMReader     # lsm
72loci.formats.in.SEQReader          # seq
73loci.formats.in.GelReader          # gel
74loci.formats.in.ImarisTiffReader   # ims
75loci.formats.in.FlexReader         # flex
76
77# TIFF-based readers with slow isThisType
78loci.formats.in.LeicaReader        # lei, tif
79loci.formats.in.NikonReader        # nef, tif
80loci.formats.in.FluoviewReader     # tif
81loci.formats.in.PrairieReader      # xml, cfg, tif
82loci.formats.in.MicromanagerReader # txt, tif
83loci.formats.in.ImprovisionTiffReader # tif
84loci.formats.in.TCSReader # tif
85loci.formats.in.OMETiffReader # tif
86
87# standard TIFF reader must go last (it accepts any TIFF)
88loci.formats.in.TiffReader         # tif, tiff
89
90# non-TIFF readers with slow isThisType
91loci.formats.in.OpenlabReader      # liff
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