source: trunk/loci/formats/readers.txt @ 3727

Revision 3727, 4.0 KB checked in by melissa, 12 years ago (diff)
  • Slight improvements to some isThisType implementations.
  • Added reader for .pcx files (exported by Zeiss' LSM Image Brower).
  • Rearranged some DataTools methods.
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
Line 
1#
2# readers.txt
3#
4
5# LOCI Bio-Formats package for reading and converting biological file formats.
6# Copyright (C) 2005-@year@ Melissa Linkert, Curtis Rueden, Chris Allan,
7# Eric Kjellman and Brian Loranger.
8#
9# This program is free software; you can redistribute it and/or modify
10# it under the terms of the GNU Library General Public License as published by
11# the Free Software Foundation; either version 2 of the License, or
12# (at your option) any later version.
13#
14# This program is distributed in the hope that it will be useful,
15# but WITHOUT ANY WARRANTY; without even the implied warranty of
16# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
17# GNU Library General Public License for more details.
18#
19# You should have received a copy of the GNU Library General Public License
20# along with this program; if not, write to the Free Software
21# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
22
23# This document is a configuration file identifying all file format readers
24# available to Bio-Formats, and the order in which they should be used.
25# Please do not edit unless you know what you are doing (see reader-guide.txt).
26
27# javax.imageio readers
28loci.formats.in.PNGReader          # png [javax.imageio]
29loci.formats.in.JPEGReader         # jpg, jpeg [javax.imageio]
30
31# standalone readers with unique file extensions
32loci.formats.in.PGMReader          # pgm
33loci.formats.in.FitsReader         # fits
34loci.formats.in.PCXReader          # pcx
35loci.formats.in.GIFReader          # gif
36loci.formats.in.BMPReader          # bmp
37loci.formats.in.DicomReader        # dcm, dicom
38loci.formats.in.BioRadReader       # pic
39loci.formats.in.IPLabReader        # ipl
40loci.formats.in.DeltavisionReader  # dv, r3d
41loci.formats.in.MRCReader          # mrc
42loci.formats.in.GatanReader        # dm3
43loci.formats.in.ImarisReader       # ims
44loci.formats.in.OpenlabRawReader   # raw
45loci.formats.in.OMEXMLReader       # ome
46loci.formats.in.LIFReader          # lif
47loci.formats.in.AVIReader          # avi
48loci.formats.in.QTReader           # mov
49loci.formats.in.PictReader         # pict, pct
50loci.formats.in.SDTReader          # sdt
51loci.formats.in.EPSReader          # eps, epsi
52loci.formats.in.SlidebookReader    # sld
53loci.formats.in.AliconaReader      # al3d
54loci.formats.in.MNGReader          # mng
55loci.formats.in.NRRDReader         # nrrd, nhdr
56loci.formats.in.KhorosReader       # xv
57loci.formats.in.VisitechReader     # html, xys
58loci.formats.in.LIMReader          # lim
59loci.formats.in.PSDReader          # psd
60loci.formats.in.InCellReader       # xdce
61
62# multi-extension messes
63loci.formats.in.ICSReader          # ics, ids
64loci.formats.in.PerkinElmerReader  # rec, ano, csv, htm, tim, zpo, 2, 3, 4, ...
65loci.formats.in.TCSReader # xml, tif
66
67# readers requiring third-party libraries
68loci.formats.in.FV1000Reader    # oib, oif, various
69loci.formats.in.ZeissZVIReader     # zvi [POIFS]
70loci.formats.in.IPWReader          # ipw [POIFS]
71loci.formats.in.LegacyND2Reader    # nd2, jp2 [Nikon SDK - Windows only]
72loci.formats.in.ND2Reader          # nd2, jp2 [JAI-ImageIO]
73loci.formats.in.PCIReader          # cxd [POIFS]
74loci.formats.in.ImarisHDFReader    # ims
75
76# TIFF-based readers with unique file extensions
77loci.formats.in.MetamorphReader    # stk
78loci.formats.in.ZeissLSMReader     # lsm
79loci.formats.in.SEQReader          # seq
80loci.formats.in.GelReader          # gel
81loci.formats.in.ImarisTiffReader   # ims
82loci.formats.in.FlexReader         # flex
83loci.formats.in.SVSReader          # svs
84
85# TIFF-based readers with slow isThisType
86loci.formats.in.LeicaReader        # lei, tif
87loci.formats.in.NikonReader        # nef, tif
88loci.formats.in.FluoviewReader     # tif
89loci.formats.in.PrairieReader      # xml, cfg, tif
90loci.formats.in.MicromanagerReader # txt, tif
91loci.formats.in.ImprovisionTiffReader # tif
92loci.formats.in.MetamorphTiffReader # tif
93loci.formats.in.OMETiffReader # tif
94
95# standard TIFF reader must go last (it accepts any TIFF)
96loci.formats.in.TiffReader         # tif, tiff
97
98# non-TIFF readers with slow isThisType
99loci.formats.in.OpenlabReader      # liff
Note: See TracBrowser for help on using the repository browser.