source: trunk/loci/formats/readers.txt @ 4059

Revision 4059, 4.2 KB checked in by melissa, 12 years ago (diff)

Added reader for Aquacosmos files and switched FEIReader's license.

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1#
2# readers.txt
3#
4
5# OME Bio-Formats package for reading and converting biological file formats.
6# Copyright (C) 2005-@year@ UW-Madison LOCI and Glencoe Software, Inc.
7#
8# This program is free software; you can redistribute it and/or modify
9# it under the terms of the GNU General Public License as published by
10# the Free Software Foundation; either version 3 of the License, or
11# (at your option) any later version.
12#
13# This program is distributed in the hope that it will be useful,
14# but WITHOUT ANY WARRANTY; without even the implied warranty of
15# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
16# GNU General Public License for more details.
17#
18# You should have received a copy of the GNU General Public License
19# along with this program; if not, write to the Free Software
20# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
21
22# This document is a configuration file identifying all file format readers
23# available to Bio-Formats, and the order in which they should be used.
24# Please do not edit unless you know what you are doing (see reader-guide.txt).
25
26# javax.imageio readers
27loci.formats.in.PNGReader             # png [javax.imageio]
28loci.formats.in.JPEGReader            # jpg, jpeg [javax.imageio]
29
30# standalone readers with unique file extensions
31loci.formats.in.PGMReader             # pgm
32loci.formats.in.FitsReader            # fits
33loci.formats.in.PCXReader             # pcx
34loci.formats.in.GIFReader             # gif
35loci.formats.in.BMPReader             # bmp
36loci.formats.in.DicomReader           # dcm, dicom
37loci.formats.in.IPLabReader           # ipl
38loci.formats.in.DeltavisionReader     # dv, r3d
39loci.formats.in.MRCReader             # mrc
40loci.formats.in.GatanReader           # dm3
41loci.formats.in.ImarisReader          # ims
42loci.formats.in.OpenlabRawReader      # raw
43loci.formats.in.OMEXMLReader          # ome
44loci.formats.in.LIFReader             # lif
45loci.formats.in.AVIReader             # avi
46loci.formats.in.QTReader              # mov
47loci.formats.in.PictReader            # pict, pct
48loci.formats.in.SDTReader             # sdt
49loci.formats.in.EPSReader             # eps, epsi
50loci.formats.in.SlidebookReader       # sld
51loci.formats.in.AliconaReader         # al3d
52loci.formats.in.MNGReader             # mng
53loci.formats.in.KhorosReader          # xv
54loci.formats.in.VisitechReader        # html, xys
55loci.formats.in.LIMReader             # lim
56loci.formats.in.PSDReader             # psd
57loci.formats.in.InCellReader          # xdce
58loci.formats.in.L2DReader             # l2d
59loci.formats.in.FEIReader             # img
60loci.formats.in.NAFReader             # naf
61
62# multi-extension messes
63loci.formats.in.NRRDReader            # nrrd, nhdr, pic
64loci.formats.in.ICSReader             # ics, ids
65loci.formats.in.PerkinElmerReader     # rec, ano, csv, htm, tim, zpo, 2, 3, ...
66loci.formats.in.TCSReader             # xml, tif
67
68# standard PIC reader must go last (it accepts any PIC)
69loci.formats.in.BioRadReader          # pic
70
71# readers requiring third-party libraries
72loci.formats.in.FV1000Reader          # oib, oif, various
73loci.formats.in.ZeissZVIReader        # zvi [POIFS]
74loci.formats.in.IPWReader             # ipw [POIFS]
75loci.formats.in.ND2Reader             # nd2, jp2 [JAI-ImageIO]
76loci.formats.in.PCIReader             # cxd [POIFS]
77loci.formats.in.ImarisHDFReader       # ims
78
79# TIFF-based readers with unique file extensions
80loci.formats.in.MetamorphReader       # stk
81loci.formats.in.ZeissLSMReader        # lsm
82loci.formats.in.SEQReader             # seq
83loci.formats.in.GelReader             # gel
84loci.formats.in.ImarisTiffReader      # ims
85loci.formats.in.FlexReader            # flex
86loci.formats.in.SVSReader             # svs
87
88# TIFF-based readers with slow isThisType
89loci.formats.in.LeicaReader           # lei, tif
90loci.formats.in.NikonReader           # nef, tif
91loci.formats.in.FluoviewReader        # tif
92loci.formats.in.PrairieReader         # xml, cfg, tif
93loci.formats.in.MicromanagerReader    # txt, tif
94loci.formats.in.ImprovisionTiffReader # tif
95loci.formats.in.MetamorphTiffReader   # tif
96loci.formats.in.OMETiffReader         # tif
97
98# standard TIFF reader must go last (it accepts any TIFF)
99loci.formats.in.TiffReader            # tif, tiff
100
101# non-TIFF readers with slow isThisType
102loci.formats.in.OpenlabReader         # liff
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