source: trunk/tools/ijview @ 6182

Revision 6182, 1.0 KB checked in by curtis, 10 years ago (diff)

Fix up logging with Bio-Formats command line tools.
This removes the hard dependency on log4j in Bio-Formats, so it should be
possible to log with other logging frameworks via SLF4J now. There is also
a log4j configuration filein the tools folder now, which should make it easier
to configure output for debugging, stack traces, etc.

  • Property svn:executable set to *
Line 
1#!/bin/bash
2
3# ijview: a script for displaying an image file in ImageJ
4#         using the Bio-Formats Importer plugin
5
6# Required JARs: loci_tools.jar, ij.jar
7
8# JAR libraries must be in the same directory as this
9# command line script for the command to function.
10
11# If you are a developer working from source and have
12# the LOCI classes in your CLASSPATH, you can set the
13# LOCI_DEVEL environment variable to use them instead.
14
15PROG=loci.plugins.importer.Importer
16DIR=`dirname "$0"`
17
18if [ $LOCI_DEVEL ]
19then
20  java -mx512m $PROG "$@"
21elif [ -e "$DIR/ij.jar" ] && \
22  ([ -e "$DIR/loci_tools.jar" ] || [ -e "$DIR/bio-formats.jar" ])
23then
24  java -mx512m -cp "$DIR":"$DIR/bio-formats.jar":"$DIR/loci_tools.jar":"$DIR/ij.jar" $PROG "$@"
25else
26  echo "Required JAR libraries not found. Please download:"
27  echo "  loci_tools.jar"
28  echo "from:"
29  echo "  http://www.loci.wisc.edu/bio-formats/downloads"
30  echo "and:"
31  echo "  ij.jar"
32  echo "from:"
33  echo "  http://rsb.info.nih.gov/ij/upgrade/"
34  echo "and place in the same directory as the command line tools."
35fi
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