Changeset 1366


Ignore:
Timestamp:
08/25/06 16:18:49 (14 years ago)
Author:
curtis
Message:

Trim down VisBio file formats documentation.

Location:
trunk/loci/visbio
Files:
17 deleted
2 edited

Legend:

Unmodified
Added
Removed
  • trunk/loci/visbio/data/DataManager.java

    r1284 r1366  
    491491    bio.setSplashStatus(null); 
    492492    HelpManager hm = (HelpManager) bio.getManager(HelpManager.class); 
    493     String s = "File formats"; 
    494     hm.addHelpTopic(s, "formats.html"); 
    495     hm.addHelpTopic(s + "/TIFF stacks", "tiff.html"); 
    496     hm.addHelpTopic(s + "/Bio-Rad PIC", "biorad.html"); 
    497     hm.addHelpTopic(s + "/Deltavision", "deltavision.html"); 
    498     hm.addHelpTopic(s + "/Gatan Digital Micrograph", "gatan.html"); 
    499     hm.addHelpTopic(s + "/Image Cytometry Standard", "ics.html"); 
    500     hm.addHelpTopic(s + "/Image-Pro Sequence", "imagepro_seq.html"); 
    501     hm.addHelpTopic(s + "/Image-Pro Workspace", "imagepro_ipw.html"); 
    502     hm.addHelpTopic(s + "/IPLab", "iplab.html"); 
    503     hm.addHelpTopic(s + "/Leica", "leica.html"); 
    504     hm.addHelpTopic(s + "/Metamorph STK", "metamorph.html"); 
    505     hm.addHelpTopic(s + "/Olympus Fluoview TIFF", "fluoview.html"); 
    506     hm.addHelpTopic(s + "/Openlab LIFF", "openlab.html"); 
    507     hm.addHelpTopic(s + "/PerkinElmer", "perkinelmer.html"); 
    508     hm.addHelpTopic(s + "/QuickTime movies", "quicktime.html"); 
    509     hm.addHelpTopic(s + "/Zeiss LSM", "zeiss_lsm.html"); 
    510     hm.addHelpTopic(s + "/Zeiss ZVI (Axiovision)", "zeiss_zvi.html"); 
    511     hm.addHelpTopic(s + "/Other formats (JPEG, BMP, etc.)", 
    512       "other_formats.html"); 
    513     s = "Data transforms"; 
     493    hm.addHelpTopic("File formats", "formats.html"); 
     494    String s = "Data transforms"; 
    514495    hm.addHelpTopic(s, "data_transforms.html"); 
    515496    hm.addHelpTopic(s + "/Datasets", "dataset.html"); 
  • trunk/loci/visbio/help/formats.html

    r587 r1366  
    22 
    33<p>Commercial instruments produce a diversity of image file types, so we are 
    4 working to add support for as many of them as possible. Currently, VisBio 
    5 supports several formats, including: 
     4working to add support for as many of them as possible through the use of our 
     5<a href="http://www.loci.wisc.edu/ome/formats.html">Bio-Formats</a> library. 
     6This version of VisBio supports the following formats: 
    67 
    78<ul> 
    8   <li><a href="tiff.html">TIFF stacks</a></li> 
    9   <li><a href="biorad.html">Bio-Rad PIC</a></li> 
    10   <li><a href="deltavision.html">Deltavision</a></li> 
    11   <li><a href="gatan.html">Gatan Digital Micrograph</a></li> 
    12   <li><a href="ics.html">Image Cytometry Standard</a></li> 
    13   <li><a href="imagepro_seq.html">Image-Pro Sequence</a></li> 
    14   <li><a href="imagepro_ipw.html">Image-Pro Workspace</a></li> 
    15   <li><a href="iplab.html">IPLab</a></li> 
    16   <li><a href="leica.html">Leica</a></li> 
    17   <li><a href="metamorph.html">Metamorph STK</a></li> 
    18   <li><a href="fluoview.html">Olympus Fluoview TIFF</a></li> 
    19   <li><a href="openlab.html">Openlab LIFF</a></li> 
    20   <li><a href="perkinelmer.html">PerkinElmer</a></li> 
    21   <li><a href="quicktime.html">QuickTime movies</a></li> 
    22   <li><a href="zeiss_lsm.html">Zeiss LSM</a></li> 
    23   <li><a href="zeiss_zvi.html">Zeiss ZVI (Axiovision)</a></li> 
    24   <li><a href="other_formats.html">Standard image formats</a>: 
    25     BMP, DICOM, FITS, GIF, JPEG, PGM, PICT, PNG</li> 
     9  <li>TIFF stacks</li> 
     10  <li>Bio-Rad PIC</li> 
     11  <li>Metamorph STK</li> 
     12  <li>Zeiss LSM</li> 
     13  <li>Zeiss Axiovision (ZVI)</li> 
     14  <li>Openlab LIFF</li> 
     15  <li>IPLab</li> 
     16  <li>Deltavision</li> 
     17  <li>Olympus Fluoview TIFF</li> 
     18  <li>Leica (lei + tif)</li> 
     19  <li>Image Cytometry Standard (ICS)</li> 
     20  <li>QuickTime movies</li> 
     21  <li>OME-XML</li> 
     22  <li>Leica Image File Format (lif)</li> 
     23  <li>Fluoview FV1000 OIF</li> 
     24  <li>Fluoview FV1000 OIB</li> 
     25  <li>Amersham Biosciences GEL</li> 
     26  <li>Imaris</li> 
     27  <li>Openlab RAW</li> 
     28  <li>Gatan Digital Micrograph (DM3)</li> 
     29  <li>PerkinElmer</li> 
     30  <li>Image-Pro Sequence</li> 
     31  <li>Image-Pro Workspace</li> 
     32  <li>Nikon Electronic Format (NEF)</li> 
     33  <li>Andor Bio-Imaging Division (ABD) TIFF</li> 
     34  <li>Encapsulated PostScript (EPS)</li> 
     35  <li>Flexible Image Transport System (FITS)</li> 
     36  <li>Digital Imaging and Communication in Medicine (DICOM)</li> 
     37  <li>Standard image formats: BMP, GIF, JPEG, PGM, PICT, PNG</li> 
    2638</ul> 
    2739 
    28 Not yet supported (but planned) are FV1000 OIB/OIF and OME-XML. 
    29  
    3040<p>For a current and complete list of formats, see the 
    31 <a href="http://www.loci.wisc.edu/visbio/formats.html">VisBio file formats</a> 
    32 section of the VisBio web site.  
     41<a href="http://www.loci.wisc.edu/ome/formats.html">Bio-Formats</a> 
     42web site.  
    3343 
    3444<br><h3>See also:</h3> 
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