Ignore:
Timestamp:
04/06/07 13:26:13 (13 years ago)
Author:
melissa
Message:

Updated docs to reflect recent changes.

File:
1 edited

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  • trunk/loci/formats/reader-guide.txt

    r2445 r2568  
    4747  the given file name (i.e. every file needed to display the current dataset). 
    4848  For an example of how this works, see loci.formats.in.PerkinElmerReader. 
    49  
    50 Double getChannelGlobalMinimum(String, int) throws FormatException, IOException: 
    51   You only need to override this if your format specifies the minimum value 
    52   for each channel in the metadata.  The int parameter specifies the channel 
    53   for which to return the minimum value. 
    54  
    55 Double getChannelGlobalMaximum(String, int) throws FormatException, IOException: 
    56   You only need to override this if your format specifies the maximum value 
    57   for each channel in the metadata.  The int parameter specifies the channel 
    58   for which to return the maximum value. 
    59  
    60 boolean isMinMaxPopulated(String) throws FormatException, IOException: 
    61   Only override this if you are also overriding getChannelGlobalMinimum and 
    62   getChannelGlobalMaximum.  In general, return true. 
    6349 
    6450byte[] openBytes(String, int) throws FormatException, IOException : 
     
    117103  you should store any relevant metadata. 
    118104 
    119 static void main(String[]) throws FormatException, IOException : 
    120   Consists of the following line: 
    121     "new <class name>().testRead(args);" 
    122  
    123105Note that if the new format is a variant of a format currently supported by 
    124106Bio-Formats, it is more efficient to make the new reader a subclass of the 
     
    214196    -stitch             Open all files with a similar name. 
    215197    -separate           Force RGB images to be split into separate channels. 
    216     -nocolors           Intepret indexed color images as grayscale. 
    217198    -omexml             Output the OME-XML for the file. 
    218199    -normalize          Normalize floating point images. 
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