Changeset 4274


Ignore:
Timestamp:
08/01/08 12:05:26 (12 years ago)
Author:
curtis
Message:

Fix some jikes warnings and remove some obsolete comments.

Location:
trunk/loci/formats
Files:
16 edited

Legend:

Unmodified
Added
Removed
  • trunk/loci/formats/in/AVIReader.java

    r4268 r4274  
    527527    MetadataTools.setDefaultCreationDate(store, id, 0); 
    528528    MetadataTools.populatePixels(store, this); 
    529  
    530     // CTR CHECK 
    531 //    for (int i=0; i<core.sizeC[0]; i++) { 
    532 //      store.setLogicalChannel(i, null, null, null, null, null, null, null, null, 
    533 //        null, null, null, null, null, 
    534 //        null, null, null, null, null, null, null, null, null, null, null); 
    535 //    } 
    536529  } 
    537530 
  • trunk/loci/formats/in/DicomReader.java

    r4205 r4274  
    579579//    store.setInstrumentManufacturer((String) getMeta("Manufacturer"), 0); 
    580580//    store.setInstrumentModel((String) getMeta("Manufacturer's Model Name"), 0); 
    581  
    582     // CTR CHECK 
    583 //    for (int i=0; i<core.sizeC[0]; i++) { 
    584 //      store.setLogicalChannel(i, null, null, null, null, null, null, null, null, 
    585 //       null, null, null, null, null, null, null, null, null, null, null, null, 
    586 //       null, null, null, null); 
    587 //    } 
    588581  } 
    589582 
  • trunk/loci/formats/in/FlexReader.java

    r4227 r4274  
    2424package loci.formats.in; 
    2525 
    26 import java.io.ByteArrayInputStream; 
    2726import java.io.IOException; 
    2827import java.util.Arrays; 
  • trunk/loci/formats/in/ImageIOReader.java

    r4205 r4274  
    130130    MetadataTools.setDefaultCreationDate(store, id, 0); 
    131131    MetadataTools.populatePixels(store, this); 
    132     // CTR CHECK 
    133 //    for (int i=0; i<core.sizeC[0]; i++) { 
    134 //      store.setLogicalChannel(i, null, null, null, null, null, null, null, null, 
    135 //        null, null, null, null, null, null, null, null, null, null, null, null, 
    136 //        null, null, null, null); 
    137 //    } 
    138132  } 
    139133 
  • trunk/loci/formats/in/ImarisHDFReader.java

    r4205 r4274  
    256256 
    257257      for (int i=1; i<seriesCount; i++) { 
    258         String group = 
     258        String groupPath = 
    259259          "/DataSet/ResolutionLevel_" + i + "/TimePoint_0/Channel_0"; 
    260260        core.sizeX[i] = 
    261           Integer.parseInt(netcdf.getAttributeValue(group + "/ImageSizeX")); 
     261          Integer.parseInt(netcdf.getAttributeValue(groupPath + "/ImageSizeX")); 
    262262        core.sizeY[i] = 
    263           Integer.parseInt(netcdf.getAttributeValue(group + "/ImageSizeY")); 
     263          Integer.parseInt(netcdf.getAttributeValue(groupPath + "/ImageSizeY")); 
    264264        core.sizeZ[i] = 
    265           Integer.parseInt(netcdf.getAttributeValue(group + "/ImageSizeZ")); 
     265          Integer.parseInt(netcdf.getAttributeValue(groupPath + "/ImageSizeZ")); 
    266266        core.imageCount[i] = core.sizeZ[i] * getSizeC() * getSizeT(); 
    267267      } 
  • trunk/loci/formats/in/LegacyND2Reader.java

    r4205 r4274  
    184184    } 
    185185    MetadataTools.populatePixels(store, this); 
    186     // CTR CHECK 
    187 //    for (int i=0; i<core.sizeX.length; i++) { 
    188 //      for (int j=0; j<core.sizeC[i]; j++) { 
    189 //        store.setLogicalChannel(j, null, null, null, null, null, null, null, 
    190 //          null, null, null, null, null, null, null, null, null, null, null, 
    191 //          null, null, null, null, null, new Integer(i)); 
    192 //      } 
    193 //    } 
    194186  } 
    195187 
  • trunk/loci/formats/in/LegacyQTReader.java

    r4205 r4274  
    239239      MetadataTools.setDefaultCreationDate(store, id, 0); 
    240240      MetadataTools.populatePixels(store, this); 
    241  
    242       // CTR CHECK 
    243 //      for (int i=0; i<core.sizeC[0]; i++) { 
    244 //        store.setLogicalChannel(i, null, null, null, null, null, null, null, 
    245 //          null, null, null, null, null, null, null, null, null, null, null, 
    246 //          null, null, null, null, null, null); 
    247 //      } 
    248241    } 
    249242    catch (ReflectException e) { 
  • trunk/loci/formats/in/MicromanagerReader.java

    r4268 r4274  
    276276    MetadataTools.setDefaultCreationDate(store, id, 0); 
    277277    MetadataTools.populatePixels(store, this); 
    278     for (int i=0; i<core.sizeC[0]; i++) { 
    279       // CTR CHECK 
    280 //      store.setLogicalChannel(i, null, null, null, null, null, null, null, null, 
    281 //        null, null, null, null, null, null, null, null, null, null, null, null, 
    282 //        null, null, null, null); 
    283     } 
    284278  } 
    285279 
  • trunk/loci/formats/in/ND2Reader.java

    r4227 r4274  
    673673      store.setDimensionsPhysicalSizeY(new Float(pixelSizeY), i, 0); 
    674674      store.setDimensionsPhysicalSizeZ(new Float(pixelSizeZ), i, 0); 
    675       // CTR CHECK 
    676 //      for (int j=0; j<core.sizeC[0]; j++) { 
    677 //        store.setLogicalChannel(j, null, null, null, null, null, null, null, 
    678 //          null, null, null, null, null, null, null, null, null, null, null, 
    679 //          null, null, null, null, null, ii); 
    680 //      } 
    681675    } 
    682676 
  • trunk/loci/formats/in/NRRDReader.java

    r4205 r4274  
    244244    MetadataTools.setDefaultCreationDate(store, id, 0); 
    245245    MetadataTools.populatePixels(store, this); 
    246  
    247     // CTR CHECK 
    248 //    for (int i=0; i<core.sizeC[0]; i++) { 
    249 //      store.setLogicalChannel(i, null, null, null, null, null, null, null, null, 
    250 //        null, null, null, null, null, null, 
    251 //        null, null, null, null, null, null, null, null, null, null); 
    252 //    } 
    253246  } 
    254247 
  • trunk/loci/formats/in/PGMReader.java

    r4205 r4274  
    157157    MetadataTools.setDefaultCreationDate(store, id, 0); 
    158158    MetadataTools.populatePixels(store, this); 
    159  
    160     // CTR CHECK 
    161 //    for (int i=0; i<core.sizeC[0]; i++) { 
    162 //      store.setLogicalChannel(i, null, null, null, null, null, null, null, 
    163 //        null, null, null, null, null, null, null, null, null, null, 
    164 //        null, null, null, null, null, null, null); 
    165 //    } 
    166159  } 
    167160 
  • trunk/loci/formats/in/SDTReader.java

    r4205 r4274  
    218218    MetadataTools.setDefaultCreationDate(store, id, 0); 
    219219    MetadataTools.populatePixels(store, this); 
    220     // CTR CHECK 
    221 //    for (int i=0; i<core.sizeC[0]; i++) { 
    222 //      store.setLogicalChannel(i, null, null, null, null, null, null, null, 
    223 //        null, null, null, null, null, null, null, null, null, null, null, null, 
    224 //        null, null, null, null, null); 
    225 //    } 
    226220  } 
    227221 
  • trunk/loci/formats/in/TCSReader.java

    r4227 r4274  
    300300 
    301301      for (int i=0; i<x.size(); i++) { 
    302         // CTR CHECK 
    303 //        for (int cc=0; cc<core.sizeC[i]; cc++) { 
    304 //          store.setLogicalChannel(cc, null, null, null, null, null, null, null, 
    305 //            null, null, null, null, null, null, null, null, 
    306 //            null, null, null, null, null, null, null, null, new Integer(i)); 
    307 //        } 
    308302        store.setDimensionsPhysicalSizeX((Float) xcal.get(i), i, 0); 
    309303        store.setDimensionsPhysicalSizeY((Float) ycal.get(i), i, 0); 
  • trunk/loci/formats/in/ZeissZVIReader.java

    r4205 r4274  
    2525 
    2626import java.io.*; 
    27 import java.text.*; 
    2827import java.util.*; 
    2928import loci.formats.*; 
  • trunk/loci/formats/out/APNGWriter.java

    r4163 r4274  
    4848 
    4949  private RandomAccessFile out; 
    50   private boolean initialized; 
    5150  private int numFrames = 0; 
    5251  private long numFramesPointer = 0; 
  • trunk/loci/formats/out/ICSWriter.java

    r4163 r4274  
    4545 
    4646  private RandomAccessFile out; 
    47   private boolean initialized = false; 
    4847 
    4948  // -- Constructor -- 
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