Ignore:
Timestamp:
11/23/09 14:50:33 (10 years ago)
Author:
melissa
Message:
  • Updated metadata support documentation.
  • Updated branch version number to 4.1.1.
File:
1 edited

Legend:

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  • trunk/components/bio-formats/doc/meta/ZeissLSMReader.txt

    r5460 r5716  
    1010 
    1111Of the 345 fields documented below: 
    12   * The file format itself supports 103 of them (29%). 
    13   * Of those, Bio-Formats fully or partially converts 103 (100%). 
     12  * The file format itself supports 89 of them (25%). 
     13  * Of those, Bio-Formats fully or partially converts 82 (92%). 
    1414 
    1515== Supported fields == 
    1616These fields are fully supported by the 
    1717Bio-Formats Zeiss Laser-Scanning Microscopy format reader: 
     18  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_ChannelComponent ChannelComponent]: Index 
     19  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_ChannelComponent ChannelComponent]: Pixels 
    1820  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Circle Circle]: Cx 
    1921  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Circle Circle]: Cy 
     
    3638  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Ellipse Ellipse]: Ry 
    3739  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Ellipse Ellipse]: Transform 
    38   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Experimenter Experimenter]: Email 
    39   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Experimenter Experimenter]: FirstName 
    40   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Experimenter Experimenter]: ID 
    41   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Experimenter Experimenter]: Institution 
    42   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Experimenter Experimenter]: LastName 
    43   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Experimenter Experimenter]: OMEName 
    4440  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Filter Filter]: ID 
    4541  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Filter Filter]: Model 
     
    4844  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_FilterSet FilterSet]: ID 
    4945  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Image Image]: CreationDate 
     46  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Image Image]: DefaultPixels 
    5047  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Image Image]: Description 
    5148  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Image Image]: InstrumentRef 
     
    5451  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Laser Laser]: LaserMedium 
    5552  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Laser Laser]: Type 
     53  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LightSource LightSource]: ID 
    5654  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Line Line]: X1 
    5755  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Line Line]: X2 
    5856  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Line Line]: Y1 
    5957  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Line Line]: Y2 
    60   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: ContrastMethod 
    61   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: Detector 
    62   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: EmWave 
    63   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: ExWave 
    64   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: FilterSet 
    65   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: Fluor 
    66   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: ID 
    67   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: IlluminationType 
    68   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: LightSource 
    69   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: Mode 
    7058  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: Name 
    71   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: NdFilter 
    72   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: OTF 
    73   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: PhotometricInterpretation 
    7459  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: PinholeSize 
    75   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: PockelCellSetting 
    76   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: SamplesPerPixel 
    7760  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: SecondaryEmissionFilter 
    78   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: SecondaryExcitationFilter 
    7961  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Objective Objective]: Correction 
    8062  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Objective Objective]: ID 
     
    8264  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Objective Objective]: Iris 
    8365  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Objective Objective]: LensNA 
    84   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Objective Objective]: Model 
    8566  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Objective Objective]: NominalMagnification 
    8667  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_ObjectiveRef ObjectiveSettings]: Objective 
     
    9475  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Pixels Pixels]: SizeY - since r646 
    9576  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Pixels Pixels]: SizeZ - since r646 
    96   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Plane Plane]: HashSHA1 
    97   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Plane Plane]: ID 
    9877  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Plane Plane]: TheC 
    9978  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Plane Plane]: TheT 
     
    11998  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_TransmittanceRange TransmittanceRange]: CutIn 
    12099  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_TransmittanceRange TransmittanceRange]: CutOut 
    121 === Total supported: 103 === 
     100=== Total supported: 82 === 
     101 
     102== Unsupported fields == 
     103For one reason or another, the 
     104Bio-Formats Zeiss Laser-Scanning Microscopy format reader 
     105does not support these fields: 
     106  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Experimenter Experimenter]: Email 
     107  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Experimenter Experimenter]: FirstName 
     108  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Experimenter Experimenter]: ID 
     109  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Experimenter Experimenter]: Institution 
     110  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Experimenter Experimenter]: LastName 
     111  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Experimenter Experimenter]: OMEName 
     112  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Objective Objective]: Model 
     113=== Total unsupported: 7 === 
    122114 
    123115== Unknown or missing fields == 
     
    127119  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Arc Arc]: Type 
    128120  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_ChannelComponent ChannelComponent]: ColorDomain 
    129   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_ChannelComponent ChannelComponent]: Index 
    130   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_ChannelComponent ChannelComponent]: Pixels 
    131121  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Circle Circle]: ID 
    132122  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Circle Circle]: Transform 
     
    182172  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Group Group]: Name 
    183173  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Image Image]: AcquiredPixels 
    184   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Image Image]: DefaultPixels 
    185174  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Image Image]: ExperimentRef 
    186175  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Image Image]: ExperimenterRef 
     
    197186  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Laser Laser]: Tuneable 
    198187  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Laser Laser]: Wavelength 
    199   * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LightSource LightSource]: ID 
    200188  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LightSource LightSource]: Manufacturer 
    201189  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LightSource LightSource]: Model 
     
    210198  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Line Line]: ID 
    211199  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Line Line]: Transform 
     200  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: ContrastMethod 
     201  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: Detector 
     202  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: EmWave 
     203  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: ExWave 
     204  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: FilterSet 
     205  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: Fluor 
     206  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: ID 
     207  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: IlluminationType 
     208  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: LightSource 
     209  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: Mode 
     210  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: NdFilter 
     211  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: OTF 
     212  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: PhotometricInterpretation 
     213  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: PockelCellSetting 
     214  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: SamplesPerPixel 
     215  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_LogicalChannel LogicalChannel]: SecondaryExcitationFilter 
    212216  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Mask Mask]: Height 
    213217  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Mask Mask]: ID 
     
    247251  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Path Path]: D 
    248252  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Path Path]: ID 
     253  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Plane Plane]: HashSHA1 
     254  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Plane Plane]: ID 
    249255  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Plate Plate]: ColumnNamingConvention 
    250256  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_Plate Plate]: Description 
     
    367373  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_WellSample WellSample]: Timepoint 
    368374  * [http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-09/ome.xsd.html#element_WellSampleRef WellSampleRef]: ID 
    369 === Total unknown or missing: 242 === 
     375=== Total unknown or missing: 256 === 
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