Changeset 5987


Ignore:
Timestamp:
03/03/10 16:31:07 (10 years ago)
Author:
curtis
Message:

Update a bunch of URLs. Still more to be done in various packages though.

Location:
trunk
Files:
51 edited

Legend:

Unmodified
Added
Removed
  • trunk/components/bio-formats/doc/using-bioformats.txt

    r5727 r5987  
    1313 
    1414For a complete list of supported formats, see the Bio-Formats home page: 
    15 http://www.loci.wisc.edu/ome/formats.html 
     15http://www.loci.wisc.edu/software/bio-formats 
    1616 
    1717                              Basic File Reading 
  • trunk/components/bio-formats/src/loci/formats/FormatTools.java

    r5634 r5987  
    4343public final class FormatTools { 
    4444 
    45   // -- Constants -- 
     45  // -- Constants - pixel types -- 
    4646 
    4747  /** Identifies the <i>INT8</i> data type used to store pixel values. */ 
     
    8383  } 
    8484 
     85  // -- Constants - dimensional labels -- 
     86 
    8587  /** 
    8688   * Identifies the <i>Channel</i> dimensional type, 
     
    118120   */ 
    119121  public static final String FREQUENCY = "Frequency"; 
     122 
     123  // -- Constants - miscellaneous -- 
    120124 
    121125  /** File grouping options. */ 
     
    132136  public static final String T_NUM = "%t"; 
    133137 
     138  // -- Constants - versioning -- 
     139 
    134140  /** Current SVN revision. */ 
    135141  public static final String SVN_REVISION = "@svn.revision@"; 
     
    140146  /** Version number of this release. */ 
    141147  public static final String VERSION = "4.2-DEV"; 
     148 
     149  // -- Constants - domains -- 
    142150 
    143151  /** Identifies the high content screening domain. */ 
     
    189197    GRAPHICS_DOMAIN 
    190198  }; 
     199 
     200  // -- Constants - web pages -- 
     201 
     202  /** URL of Bio-Formats web page. */ 
     203  public static final String URL_BIO_FORMATS = 
     204    "http://www.loci.wisc.edu/software/bio-formats"; 
     205 
     206  /** URL of 'Bio-Formats as a Java Library' web page. */ 
     207  public static final String URL_BIO_FORMATS_LIBRARIES = 
     208    "http://www.loci.wisc.edu/bio-formats/bio-formats-java-library"; 
     209 
     210  /** URL of OME-TIFF web page. */ 
     211  public static final String URL_OME_TIFF = 
     212    "http://ome-xml.org/wiki/OmeTiff"; 
     213 
     214  /** URL of direct LOCI JAR downloads. */ 
     215  public static final String URL_JAR_DOWNLOADS = 
     216    "http://skyking.microscopy.wisc.edu/svn/java/trunk/jar/"; 
    191217 
    192218  // -- Constructor -- 
  • trunk/components/bio-formats/src/loci/formats/NetcdfTools.java

    r5552 r5987  
    4848 
    4949  private static final String NO_NETCDF_MSG = 
    50     "NetCDF is required to read NetCDF/HDF variants.  Please obtain " + 
    51     "the necessary JAR files from http://loci.wisc.edu/ome/formats.html.\n" + 
    52     "Required JAR files are netcdf-4.0.jar, bufr-1.1.00.jar, grib-5.1.03.jar " + 
    53     ", and slf4j-jdk14.jar."; 
     50    "NetCDF is required to read NetCDF/HDF variants.  Please obtain the " + 
     51    "necessary JAR files from " + FormatTools.URL_BIO_FORMATS_LIBRARIES + 
     52    ".\nRequired JAR files are " + 
     53    "netcdf-4.0.jar, bufr-1.1.00.jar, grib-5.1.03.jar, and slf4j-jdk14.jar."; 
    5454 
    5555  // -- Fields -- 
  • trunk/components/bio-formats/src/loci/formats/POITools.java

    r5881 r5987  
    5151  private static final String NO_POI_MSG = 
    5252    "Jakarta POI is required to read Compix SimplePCI, Fluoview FV1000 OIB, " + 
    53     "ImagePro IPW, and Zeiss ZVI files.  Please obtain poi-loci.jar from " + 
    54     "http://loci.wisc.edu/ome/formats.html"; 
     53    "ImagePro IPW, and Zeiss ZVI files. Please obtain poi-loci.jar from " + 
     54    FormatTools.URL_BIO_FORMATS_LIBRARIES; 
    5555 
    5656  // -- Fields -- 
  • trunk/components/bio-formats/src/loci/formats/codec/JPEG2000Codec.java

    r5583 r5987  
    4646import loci.common.ReflectedUniverse; 
    4747import loci.formats.FormatException; 
     48import loci.formats.FormatTools; 
    4849import loci.formats.MissingLibraryException; 
    4950import loci.formats.gui.AWTImageTools; 
     
    6566  private static final String NO_J2K_MSG = 
    6667    "The JAI Image I/O Tools are required to read JPEG-2000 files. Please " + 
    67     "obtain jai_imageio.jar from http://loci.wisc.edu/ome/formats-library.html"; 
     68    "obtain jai_imageio.jar from " + 
     69    FormatTools.URL_BIO_FORMATS_LIBRARIES; 
    6870 
    6971  private static final String J2K_READER = 
  • trunk/components/bio-formats/src/loci/formats/gui/ImageViewer.java

    r5590 r5987  
    572572        "<br>Copyright (C) 2005-@year@ " + 
    573573        "UW-Madison LOCI and Glencoe Software, Inc." + 
    574         "<br><i>http://www.loci.wisc.edu/ome/formats.html</i>" + 
     574        "<br><i>" + FormatTools.URL_BIO_FORMATS + "</i>" + 
    575575        "<br>Revision @svn.revision@, built @date@"; 
    576576      ImageIcon bioFormatsLogo = new ImageIcon( 
  • trunk/components/bio-formats/src/loci/formats/in/LegacyND2Reader.java

    r5552 r5987  
    5656  private static final int MULTI_PHOTON = 5; 
    5757 
    58   private static final String NO_NIKON_MSG = 
    59     "Nikon ND2 library not found.  Please see " + 
    60     "http://loci.wisc.edu/ome/formats.html for details."; 
     58  private static final String URL_NIKON_ND2 = 
     59    "http://www.loci.wisc.edu/bio-formats-format/nikon-nis-elements-nd2"; 
     60  private static final String NO_NIKON_MSG = "Nikon ND2 library not found. " + 
     61    "Please see " + URL_NIKON_ND2 + " for details."; 
    6162 
    6263  // -- Static initializers -- 
  • trunk/components/bio-formats/src/loci/formats/in/MDBParser.java

    r5559 r5987  
    3131import loci.common.ReflectedUniverse; 
    3232import loci.formats.FormatException; 
     33import loci.formats.FormatTools; 
    3334import loci.formats.MissingLibraryException; 
    3435 
     
    4647  private static final String NO_MDB_MSG = 
    4748    "The Java port of MDB tools is required to read MDB files. Please " + 
    48     "obtain mdbtools-java.jar from http://loci.wisc.edu/ome/formats.html"; 
     49    "obtain mdbtools-java.jar from " + FormatTools.URL_BIO_FORMATS_LIBRARIES; 
    4950 
    5051  // -- Static fields -- 
  • trunk/components/bio-formats/src/loci/formats/in/OMETiffReader.java

    r5960 r5987  
    4040import loci.formats.IFormatReader; 
    4141import loci.formats.MetadataTools; 
     42import loci.formats.MissingLibraryException; 
    4243import loci.formats.meta.IMetadata; 
    4344import loci.formats.tiff.IFD; 
     
    4849/** 
    4950 * OMETiffReader is the file format reader for 
    50  * <a href="http://www.loci.wisc.edu/ome/ome-tiff-spec.html">OME-TIFF</a> 
    51  * files. 
     51 * <a href="http://ome-xml.org/wiki/OmeTiff">OME-TIFF</a> files. 
    5252 * 
    5353 * <dl><dt><b>Source code:</b></dt> 
     
    5656 */ 
    5757public class OMETiffReader extends FormatReader { 
     58 
     59  // -- Constants -- 
     60 
     61  private static final String NO_OME_XML_MSG = 
     62    "ome-xml.jar is required to read OME-TIFF files.  " + 
     63    "Please download it from " + FormatTools.URL_BIO_FORMATS_LIBRARIES; 
    5864 
    5965  // -- Fields -- 
     
    9298 
    9399    if (meta == null) { 
    94       throw new FormatException("ome-xml.jar is required to read OME-TIFF " + 
    95         "files.  Please download it from " + 
    96         "http://loci.wisc.edu/ome/formats-library.html"); 
     100      throw new MissingLibraryException(NO_OME_XML_MSG); 
    97101    } 
    98102 
     
    233237 
    234238    if (meta == null) { 
    235       throw new FormatException("ome-xml.jar is required to read OME-TIFF " + 
    236         "files.  Please download it from " + 
    237         "http://loci.wisc.edu/ome/formats-library.html"); 
     239      throw new MissingLibraryException(NO_OME_XML_MSG); 
    238240    } 
    239241 
  • trunk/components/bio-formats/src/loci/formats/in/OMEXMLReader.java

    r5756 r5987  
    6363  // -- Constants -- 
    6464 
    65   private static final String NO_OME_JAVA_MSG = 
     65  private static final String NO_OME_XML_MSG = 
    6666    "The Java OME-XML library is required to read OME-XML files. Please " + 
    67     "obtain ome-xml.jar from http://loci.wisc.edu/ome/formats.html"; 
     67    "obtain ome-xml.jar from " + FormatTools.URL_BIO_FORMATS_LIBRARIES; 
    6868 
    6969  // -- Static fields -- 
     
    251251  protected void initFile(String id) throws FormatException, IOException { 
    252252    debug("OMEXMLReader.initFile(" + id + ")"); 
    253     if (noOME) throw new MissingLibraryException(NO_OME_JAVA_MSG); 
     253    if (noOME) throw new MissingLibraryException(NO_OME_XML_MSG); 
    254254    super.initFile(id); 
    255255 
     
    277277 
    278278    if (omexmlMeta == null) { 
    279       throw new FormatException("ome-xml.jar is required to read " + 
    280         "OME-XML files. Please download it from " + 
    281         "http://loci.wisc.edu/ome/formats-library.html"); 
     279      throw new MissingLibraryException(NO_OME_XML_MSG); 
    282280    } 
    283281 
  • trunk/components/bio-formats/src/loci/formats/out/OMETiffWriter.java

    r5881 r5987  
    5353    "Please edit cautiously (if at all), and back up the original data " + 
    5454    "before doing so. For more information, see the OME-TIFF web site: " + 
    55     "http://loci.wisc.edu/ome/ome-tiff.html. -->"; 
     55    FormatTools.URL_OME_TIFF + ". -->"; 
    5656 
    5757  // -- Static fields -- 
  • trunk/components/bio-formats/utils/MakeTestOmeTiff.java

    r5598 r5987  
    436436      "Please edit cautiously (if at all), and back up the original data " + 
    437437      "before doing so. For more information, see the OME-TIFF web site: " + 
    438       "http://loci.wisc.edu/ome/ome-tiff.html. -->\n" + 
     438      "http://ome-xml.org/wiki/OmeTiff. -->\n" + 
    439439      "<OME xmlns=\"" + schemaPath + "\" " + 
    440440      "xmlns:bf=\"http://www.openmicroscopy.org/Schemas/BinaryFile/2008-09\" " + 
  • trunk/components/bio-formats/utils/mipav/readme.txt

    r5500 r5987  
    55 
    661) Download the loci_tools.jar trunk build from: 
    7      http://www.loci.wisc.edu/ome/formats-download.html 
     7     http://www.loci.wisc.edu/bio-formats/downloads 
    88   and save it in your MIPAV directory. 
    99 
  • trunk/components/loci-plugins/src/loci/plugins/About.java

    r5502 r5987  
    5959      "<br><b>Bio-Formats Importer</b> and <b>Bio-Formats Exporter</b>" + 
    6060      "<br>Authors: Melissa Linkert, Curtis Rueden" + 
    61       "<br><i>http://www.loci.wisc.edu/ome/formats-imagej.html</i>" + 
     61      "<br><i>http://www.loci.wisc.edu/bio-formats/imagej</i>" + 
    6262      "<br>" + 
    6363      "<br><b>Data Browser</b>" + 
    6464      "<br>Authors: Curtis Rueden, Melissa Linkert, Chris Peterson" + 
    65       "<br><i>http://www.loci.wisc.edu/ome/browser.html</i>" + 
     65      "<br><i>http://www.loci.wisc.edu/software/data-browser</i>" + 
    6666      "<br>" + 
    6767      "<br><b>Stack Colorizer</b> and <b>Stack Slicer</b>" + 
  • trunk/components/loci-plugins/src/loci/plugins/config/libraries.txt

    r5880 r5987  
    117117class = loci.plugins.About 
    118118version = bfVersion 
    119 url = http://www.loci.wisc.edu/ome/formats-imagej.html 
     119url = http://www.loci.wisc.edu/bio-formats/imagej 
    120120license = GPL 
    121121notes = LOCI Plugins for ImageJ: a collection of ImageJ plugins including 
     
    128128class = loci.plugins.ome.About 
    129129version = omeVersion 
    130 url = http://www.loci.wisc.edu/ome/ome-plugins.html 
     130url = http://ome-xml.org/wiki/OmePlugins 
    131131license = GPL 
    132132notes = OME Plugins for ImageJ: a collection of ImageJ plugins including 
     
    155155class = loci.formats.IFormatReader 
    156156version = bfVersion 
    157 url = http://www.loci.wisc.edu/ome/formats.html 
     157url = http://www.loci.wisc.edu/software/bio-formats 
    158158license = GPL 
    159159notes = OME Bio-Formats package for reading and converting 
     
    164164class = loci.ome.io.OMEUtils 
    165165version = omeVersion 
    166 url = http://www.loci.wisc.edu/ome/ome-java.html 
     166url = http://www.openmicroscopy.org/site/support/legacy/ome-server/developer/java-api 
    167167license = GPL 
    168168notes = OME database I/O package for communicating with OME and OMERO servers. 
     
    172172class = loci.visbio.VisBio 
    173173version = visbioVersion 
    174 url = http://www.loci.wisc.edu/visbio/ 
     174url = http://www.loci.wisc.edu/software/visbio/ 
    175175license = GPL 
    176176notes = LOCI's biological visualization tool designed for easy visualization 
     
    252252type = Java library 
    253253class = ome.xml.OMEXMLNode 
    254 url = http://www.loci.wisc.edu/ome/ome-xml-java.html 
     254url = http://ome-xml.org/wiki/OmeXmlJava 
    255255license = LGPL 
    256256notes = Used by Bio-Formats to work with OME-XML. 
     
    337337type = Java library 
    338338class = loci.ome.notes.Notes 
    339 url = http://www.loci.wisc.edu/ome/notes.html 
     339url = http://www.loci.wisc.edu/software/ome-notes 
    340340license = GPL 
    341341notes = OME Notes library for flexible organization and presentation 
  • trunk/components/native/bf-cpp/readme.txt

    r5682 r5987  
    147147individual JAR files as appropriate for your application. For details, see: 
    148148 
    149   http://www.loci.wisc.edu/ome/formats-library.html 
     149  http://www.loci.wisc.edu/bio-formats/bio-formats-java-library 
    150150 
    151151Please direct questions to the Bio-Formats team at bioformats@loci.wisc.edu. 
  • trunk/components/native/bf-itk/itkBioFormatsImageIOFactory.cxx

    r5682 r5987  
    7979  BioFormatsImageIOFactory::GetDescription() const 
    8080  { 
    81     return "Bio-Formats ImageIO Factory, allows the loading of Bio-Formats-compatible images into Insight; see http://www.loci.wisc.edu/ome/formats.html"; 
     81    return "Bio-Formats ImageIO Factory, allows the loading of Bio-Formats-compatible images into Insight; see http://www.loci.wisc.edu/bio-formats/itk"; 
    8282  } 
    8383 
  • trunk/components/ome-io/src/loci/ome/io/OMEReader.java

    r5271 r5987  
    5959    "OME-Java not found. " + 
    6060    "Please download OME-Java from " + 
    61     "http://www.loci.wisc.edu/ome/ome-java.html"; 
     61    "http://www.openmicroscopy.org/" + 
     62    "site/support/legacy/ome-server/developer/java-api"; 
    6263 
    6364  // -- Fields -- 
  • trunk/components/ome-io/src/loci/ome/io/OMEUtils.java

    r5093 r5987  
    4646  private static final String NO_OMERO_MSG = "OMERO client libraries not " + 
    4747    "found.  Please obtain omero-common.jar and omero-client.jar from " + 
    48     "http://www.loci.wisc.edu/ome/formats.html"; 
     48    "http://skyking.microscopy.wisc.edu/svn/java/trunk/jar/"; 
    4949 
    5050  private static final String NO_OME_MSG = "OME-Java library not found.  " + 
    51     "Please obtain ome-java.jar from http://www.openmicroscopy.org/site/" + 
    52     "documents/data-management/ome-server/developer/java-api"; 
     51    "Please obtain ome-java.jar from " + 
     52    "http://www.openmicroscopy.org/" + 
     53    "site/support/legacy/ome-server/developer/java-api"; 
    5354 
    5455  // -- Static fields -- 
  • trunk/components/ome-io/src/loci/ome/io/OMEWriter.java

    r5271 r5987  
    6060    "OME-Java not found. " + 
    6161    "Please download OME-Java from " + 
    62     "http://www.loci.wisc.edu/ome/ome-java.html"; 
     62    "http://www.openmicroscopy.org/" + 
     63    "site/support/legacy/ome-server/developer/java-api"; 
    6364 
    6465  // -- Static fields -- 
  • trunk/components/ome-plugins/src/loci/plugins/ome/About.java

    r5093 r5987  
    5757      "<br><b>Download from OME</b> and <b>Upload to OME</b>" + 
    5858      "<br>Authors: Melissa Linkert, Philip Huettl" + 
    59       "<br><i>http://www.loci.wisc.edu/ome/ome-plugins.html</i>"; 
     59      "<br><i>http://ome-xml.org/wiki/OmePlugins</i>"; 
    6060    ImageIcon omeLogo = new ImageIcon( 
    6161      OMEReader.class.getResource("ome-logo.png")); 
  • trunk/components/ome-xml/src/ome/xml/About.java

    r4584 r5987  
    5050      "revision @svn.revision@, built @date@"); 
    5151    System.out.println("Copyright 2005-@year@ Open Microscopy Environment"); 
    52     System.out.println("http://www.loci.wisc.edu/ome/ome-xml-java.html"); 
     52    System.out.println("http://ome-xml.org/wiki/OmeXmlJava"); 
    5353    System.out.println("Authors: Curtis Rueden, Chris Allan"); 
    5454  } 
  • trunk/components/visbio/src/loci/visbio/help/formats.html

    r1366 r5987  
    33<p>Commercial instruments produce a diversity of image file types, so we are 
    44working to add support for as many of them as possible through the use of our 
    5 <a href="http://www.loci.wisc.edu/ome/formats.html">Bio-Formats</a> library. 
     5<a href="http://www.loci.wisc.edu/software/bio-formats">Bio-Formats</a> library. 
    66This version of VisBio supports the following formats: 
    77 
     
    3939 
    4040<p>For a current and complete list of formats, see the 
    41 <a href="http://www.loci.wisc.edu/ome/formats.html">Bio-Formats</a> 
     41<a href="http://www.loci.wisc.edu/software/bio-formats">Bio-Formats</a> 
    4242web site.  
    4343 
  • trunk/components/visbio/src/loci/visbio/help/import_data.html

    r558 r5987  
    101033 distinct focal planes). Each image is 768 x 512 pixels, and the dataset is 
    1111about 1 GB total on disk. Note that the 
    12 <a href="http://www.loci.wisc.edu/visbio/data.html">"sdub" dataset</a> 
     12<a href="http://www.loci.wisc.edu/software/sample-data">"sdub" dataset</a> 
    1313available for download from the 
    1414<a href="http://www.loci.wisc.edu/visbio/">VisBio website</a> is a downsampled 
  • trunk/components/visbio/src/loci/visbio/help/look_and_feel.html

    r301 r5987  
    3131 
    3232<p>If you are using VisBio's 
    33 <a href="http://www.loci.wisc.edu/visbio/download_jws.html">online 
     33<a href="http://www.loci.wisc.edu/visbio/web-start">online 
    3434distribution</a>, please note that the Look and Feel is set to JGoodies Plastic 
    35353D and cannot be changed through the user interface. 
  • trunk/components/visbio/src/loci/visbio/help/memory_limit.html

    r301 r5987  
    1818 
    1919<p>If you are using VisBio's 
    20 <a href="http://www.loci.wisc.edu/visbio/download_jws.html">online 
     20<a href="http://www.loci.wisc.edu/visbio/web-start">online 
    2121distribution</a>, please note that the memory limit is fixed at 512 MB and 
    2222cannot be changed through the user interface. 
  • trunk/components/visbio/src/loci/visbio/help/renderer.html

    r628 r5987  
    1212 
    1313<p>If you are using VisBio's 
    14 <a href="http://www.loci.wisc.edu/visbio/download_jws.html">online 
     14<a href="http://www.loci.wisc.edu/visbio/web-start">online 
    1515distribution</a>, please note that the renderer is set to OpenGL 
    1616and cannot be changed through the user interface. 
  • trunk/tools/bfconvert

    r4207 r5987  
    2525  echo "  loci_tools.jar" 
    2626  echo "from:" 
    27   echo "  http://www.loci.wisc.edu/ome/formats.html" 
     27  echo "  http://www.loci.wisc.edu/bio-formats/downloads" 
    2828  echo "and place in the same directory as the command line tools." 
    2929fi 
  • trunk/tools/bfconvert.bat

    r4206 r5987  
    3535echo   loci_tools.jar 
    3636echo from: 
    37 echo   http://www.loci.wisc.edu/ome/formats.html 
     37echo   http://www.loci.wisc.edu/bio-formats/downloads 
    3838echo and place in the same directory as the command line tools. 
    3939 
  • trunk/tools/bfview

    r4207 r5987  
    2525  echo "  loci_tools.jar" 
    2626  echo "from:" 
    27   echo "  http://www.loci.wisc.edu/ome/formats.html" 
     27  echo "  http://www.loci.wisc.edu/bio-formats/downloads" 
    2828  echo "and place in the same directory as the command line tools." 
    2929fi 
  • trunk/tools/bfview.bat

    r4206 r5987  
    3535echo   loci_tools.jar 
    3636echo from: 
    37 echo   http://www.loci.wisc.edu/ome/formats.html 
     37echo   http://www.loci.wisc.edu/bio-formats/downloads 
    3838echo and place in the same directory as the command line tools. 
    3939 
  • trunk/tools/domainlist

    r5715 r5987  
    2525  echo "  loci_tools.jar" 
    2626  echo "from:" 
    27   echo "  http://www.loci.wisc.edu/ome/formats.html" 
     27  echo "  http://www.loci.wisc.edu/bio-formats/downloads" 
    2828  echo "and place in the same directory as the command line tools." 
    2929fi 
  • trunk/tools/domainlist.bat

    r5715 r5987  
    3535echo   loci_tools.jar 
    3636echo from: 
    37 echo   http://www.loci.wisc.edu/ome/formats.html 
     37echo   http://www.loci.wisc.edu/bio-formats/downloads 
    3838echo and place in the same directory as the command line tools. 
    3939 
  • trunk/tools/editor

    r4734 r5987  
    3030  echo "  loci_tools.jar" 
    3131  echo "from:" 
    32   echo "  http://www.loci.wisc.edu/ome/formats.html" 
     32  echo "  http://www.loci.wisc.edu/bio-formats/downloads" 
    3333  echo "as well as the OME Metadata Notebook JARs from:" 
    3434  echo "  http://www.loci.wisc.edu/software/daily/ome-editor.jar" 
  • trunk/tools/editor.bat

    r4734 r5987  
    3939echo   loci_tools.jar 
    4040echo from: 
    41 echo   http://www.loci.wisc.edu/ome/formats.html 
     41echo   http://www.loci.wisc.edu/bio-formats/downloads 
    4242echo as well as the OME Metadata Notebook JARs from: 
    4343echo   http://www.loci.wisc.edu/software/daily/ome-editor.jar 
  • trunk/tools/formatlist

    r5253 r5987  
    2525  echo "  loci_tools.jar" 
    2626  echo "from:" 
    27   echo "  http://www.loci.wisc.edu/ome/formats.html" 
     27  echo "  http://www.loci.wisc.edu/bio-formats/downloads" 
    2828  echo "and place in the same directory as the command line tools." 
    2929fi 
  • trunk/tools/formatlist.bat

    r5253 r5987  
    3535echo   loci_tools.jar 
    3636echo from: 
    37 echo   http://www.loci.wisc.edu/ome/formats.html 
     37echo   http://www.loci.wisc.edu/bio-formats/downloads 
    3838echo and place in the same directory as the command line tools. 
    3939 
  • trunk/tools/ijview

    r4734 r5987  
    3030  echo "  loci_tools.jar" 
    3131  echo "from:" 
    32   echo "  http://www.loci.wisc.edu/ome/formats.html" 
     32  echo "  http://www.loci.wisc.edu/bio-formats/downloads" 
    3333  echo "and:" 
    3434  echo "  ij.jar" 
  • trunk/tools/ijview.bat

    r4734 r5987  
    3737echo   loci_tools.jar 
    3838echo from: 
    39 echo   http://www.loci.wisc.edu/ome/formats.html 
     39echo   http://www.loci.wisc.edu/bio-formats/downloads 
    4040echo and: 
    4141echo   ij.jar 
  • trunk/tools/notes

    r4734 r5987  
    2929  echo "  loci_tools.jar" 
    3030  echo "from:" 
    31   echo "  http://www.loci.wisc.edu/ome/formats.html" 
     31  echo "  http://www.loci.wisc.edu/bio-formats/downloads" 
    3232  echo "as well as the OME Notes JAR from:" 
    3333  echo "  http://www.loci.wisc.edu/software/daily/ome-notes.jar" 
  • trunk/tools/notes.bat

    r4734 r5987  
    3636echo   loci_tools.jar 
    3737echo from: 
    38 echo   http://www.loci.wisc.edu/ome/formats.html 
     38echo   http://www.loci.wisc.edu/bio-formats/downloads 
    3939echo as well as the OME Notes JAR from: 
    4040echo   http://www.loci.wisc.edu/software/daily/ome-notes.jar 
  • trunk/tools/omeul

    r4207 r5987  
    2525  echo "  loci_tools.jar" 
    2626  echo "from:" 
    27   echo "  http://www.loci.wisc.edu/ome/formats.html" 
     27  echo "  http://www.loci.wisc.edu/bio-formats/downloads" 
    2828  echo "and place in the same directory as the command line tools." 
    2929fi 
  • trunk/tools/omeul.bat

    r4206 r5987  
    3535echo   loci_tools.jar 
    3636echo from: 
    37 echo   http://www.loci.wisc.edu/ome/formats.html 
     37echo   http://www.loci.wisc.edu/bio-formats/downloads 
    3838echo and place in the same directory as the command line tools. 
    3939 
  • trunk/tools/showinf

    r4207 r5987  
    2626  echo "  loci_tools.jar" 
    2727  echo "from:" 
    28   echo "  http://www.loci.wisc.edu/ome/formats.html" 
     28  echo "  http://www.loci.wisc.edu/bio-formats/downloads" 
    2929  echo "and place in the same directory as the command line tools." 
    3030fi 
  • trunk/tools/showinf.bat

    r4206 r5987  
    3636echo   loci_tools.jar 
    3737echo from: 
    38 echo   http://www.loci.wisc.edu/ome/formats.html 
     38echo   http://www.loci.wisc.edu/bio-formats/downloads 
    3939echo and place in the same directory as the command line tools. 
    4040 
  • trunk/tools/tiffcomment

    r4207 r5987  
    2626  echo "  loci_tools.jar" 
    2727  echo "from:" 
    28   echo "  http://www.loci.wisc.edu/ome/formats.html" 
     28  echo "  http://www.loci.wisc.edu/bio-formats/downloads" 
    2929  echo "and place in the same directory as the command line tools." 
    3030fi 
  • trunk/tools/tiffcomment.bat

    r4206 r5987  
    3636echo   loci_tools.jar 
    3737echo from: 
    38 echo   http://www.loci.wisc.edu/ome/formats.html 
     38echo   http://www.loci.wisc.edu/bio-formats/downloads 
    3939echo and place in the same directory as the command line tools. 
    4040 
  • trunk/tools/xmlindent

    r4207 r5987  
    2525  echo "  loci_tools.jar" 
    2626  echo "from:" 
    27   echo "  http://www.loci.wisc.edu/ome/formats.html" 
     27  echo "  http://www.loci.wisc.edu/bio-formats/downloads" 
    2828  echo "and place in the same directory as the command line tools." 
    2929fi 
  • trunk/tools/xmlindent.bat

    r4206 r5987  
    3535echo   loci_tools.jar 
    3636echo from: 
    37 echo   http://www.loci.wisc.edu/ome/formats.html 
     37echo   http://www.loci.wisc.edu/bio-formats/downloads 
    3838echo and place in the same directory as the command line tools. 
    3939 
  • trunk/tools/xmlvalid

    r4207 r5987  
    2525  echo "  loci_tools.jar" 
    2626  echo "from:" 
    27   echo "  http://www.loci.wisc.edu/ome/formats.html" 
     27  echo "  http://www.loci.wisc.edu/bio-formats/downloads" 
    2828  echo "and place in the same directory as the command line tools." 
    2929fi 
  • trunk/tools/xmlvalid.bat

    r4206 r5987  
    3535echo   loci_tools.jar 
    3636echo from: 
    37 echo   http://www.loci.wisc.edu/ome/formats.html 
     37echo   http://www.loci.wisc.edu/bio-formats/downloads 
    3838echo and place in the same directory as the command line tools. 
    3939 
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