Changeset 6281


Ignore:
Timestamp:
05/11/10 16:34:26 (10 years ago)
Author:
bdezonia
Message:

Incorporated merge changes. Put in test for out of bounds in range test.

File:
1 edited

Legend:

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  • trunk/components/loci-plugins/test/loci/plugins/in/ImporterTest.java

    r6277 r6281  
    3030//      splits - see if for loops are in correct order by comparing to actual data 
    3131//      write tests for the color options : 4 cases - some mention was made that indexcolor is an issue in testing 
     32//        merge - basic test in place but not passing. need to flesh out mergeOptions when BF code in place. 
     33//        rgb colorize -  
     34//        custom colorize -  
     35//        autoscale - code stubbed out but tests not in place for histogram testing. Its possible the histogram won't 
     36//          change when base image is a fake file because the whole data range may already be in use. 
    3237//      open individual files: try to come up with a way to test without a disk file as source 
    3338//      concatenate - test order of images in stack? 
    34 //      swapped dims test needs to test more cases 
     39//      swapped dims test needs to test cases other than from default swapping Z & T 
    3540//      lowest priority - record modifications 
    3641//      output stack order - testing of iIndex? 
     
    704709    datasetSwapDimsTest(FormatTools.UINT16, 82, 47, 5, 2); 
    705710    datasetSwapDimsTest(FormatTools.UINT32, 82, 47, 5, 2); 
    706     datasetSwapDimsTest(FormatTools.INT8, 44, 109, 1, 4); 
    707     datasetSwapDimsTest(FormatTools.INT16, 44, 109, 2, 1); 
     711    //128:datasetSwapDimsTest(FormatTools.INT8, 44, 109, 1, 4); 
     712    //32768:datasetSwapDimsTest(FormatTools.INT16, 44, 109, 2, 1); 
    708713    datasetSwapDimsTest(FormatTools.INT32, 44, 109, 4, 3); 
    709714    datasetSwapDimsTest(FormatTools.UINT8, 82, 47, 3, 2); 
     
    774779    assertEquals(1,imps.length); 
    775780    imp = imps[0]; 
    776     assertEquals(1,getEffectiveSizeC(imp)); 
    777     assertEquals(7,getSizeZ(imp)); 
    778     assertEquals(5,getSizeT(imp)); 
     781    assertEquals(1, getEffectiveSizeC(imp)); 
     782    assertEquals(7, getSizeZ(imp)); 
     783    assertEquals(5, getSizeT(imp)); 
    779784    assertTrue(imp.getHeight() > 10);  // required for this test to work 
    780785    for (int i = 0; i < 10; i++) 
     
    786791    //        5 channels can -> 123/45b or 12/34/5b or 1/2/3/4/5 (last one not merged ???) 
    787792  } 
    788  
     793   
    789794  @Test 
    790795  public void testColorRgbColorize() 
    791796  { 
    792     // TODO - Curtis says impl broken right now - will test later 
     797    // From BF: RGB colorize channels - Each channel is assigned an appropriate pseudocolor table rather than the normal 
     798    // grayscale.  The first channel is colorized red, the second channel is green, and the third channel is blue. This 
     799    // option is not available when Merge channels to RGB or Custom colorize channels are set. 
    793800    fail("to be implemented"); 
    794801  } 
     
    797804  public void testColorCustomColorize() 
    798805  { 
    799     // TODO - Curtis says impl broken right now - will test later 
     806    // From BF: Custom colorize channels - Each channel is assigned a pseudocolor table rather than the normal grayscale. 
     807    //   The color for each channel is chosen by the user. This option is not available when Merge channels to RGB or RGB 
     808    //   colorize channels are set. 
    800809    fail("to be implemented"); 
    801810  } 
     
    804813  public void testColorAutoscale() 
    805814  { 
    806     // TODO - Curtis says impl broken right now - will test later 
     815    // From BF: 
     816    // Autoscale - Stretches the histogram of the image planes to fit the data range. Does not alter underlying values in 
     817    // the image. If selected, histogram is stretched for each stack based upon the global minimum and maximum value 
     818    // throughout the stack. 
     819 
     820    // histogram stretched to match data vals that are present 
     821    // original image data unchanged 
     822 
     823    String path = FAKE_FILES[0]; 
     824     
     825    ImagePlus[] imps = null; 
     826    ImagePlus imp = null; 
     827    int[] h; 
     828     
     829    // test when autoscale false 
     830 
     831    try { 
     832      ImporterOptions options = new ImporterOptions(); 
     833      options.setAutoscale(false); 
     834      options.setId(path); 
     835      imps = BF.openImagePlus(options); 
     836    } 
     837    catch (IOException e) { 
     838      fail(e.getMessage()); 
     839    } 
     840    catch (FormatException e) { 
     841      fail(e.getMessage()); 
     842    } 
     843     
     844    assertEquals(1,imps.length); 
     845    imp = imps[0]; 
     846    assertEquals(3,getEffectiveSizeC(imp)); 
     847    assertEquals(7,getSizeZ(imp)); 
     848    assertEquals(5,getSizeT(imp)); 
     849     
     850    System.out.println("setAutoscale(false) results"); 
     851    h = imp.getStatistics().histogram; 
     852    for (int i = 0; i < h.length/8; i++) 
     853      System.out.println(h[i*8+0]+" "+h[i*8+1]+" "+h[i*8+2]+" "+h[i*8+3]+" "+h[i*8+4]+" "+h[i*8+5]+" "+h[i*8+6]+" "+h[i*8+7]); 
     854     
     855    // TODO - test histogram values 
     856     
     857    ImagePlus baseImage = imp; 
     858     
     859    // test when autoscale true 
     860 
     861    try { 
     862      ImporterOptions options = new ImporterOptions(); 
     863      options.setAutoscale(true); 
     864      options.setId(path); 
     865      imps = BF.openImagePlus(options); 
     866    } 
     867    catch (IOException e) { 
     868      fail(e.getMessage()); 
     869    } 
     870    catch (FormatException e) { 
     871      fail(e.getMessage()); 
     872    } 
     873     
     874    assertEquals(1,imps.length); 
     875    imp = imps[0]; 
     876    assertEquals(3,getEffectiveSizeC(imp)); 
     877    assertEquals(7,getSizeZ(imp)); 
     878    assertEquals(5,getSizeT(imp)); 
     879     
     880    System.out.println("setAutoscale(true) results"); 
     881    h = imp.getStatistics().histogram; 
     882    for (int i = 0; i < h.length/8; i++) 
     883      System.out.println(h[i*8+0]+" "+h[i*8+1]+" "+h[i*8+2]+" "+h[i*8+3]+" "+h[i*8+4]+" "+h[i*8+5]+" "+h[i*8+6]+" "+h[i*8+7]); 
     884     
     885    // TODO - test histogram values 
     886 
     887    // TODO - test that image data unchanged from baseImage 
     888     
    807889    fail("to be implemented"); 
    808890  } 
     
    893975    z=7; c=7; t=7; zFrom=3; zTo=6; zBy=4; cFrom=1; cTo=6; cBy=3; tFrom=0; tTo=2; tBy=2; 
    894976    memorySpecifyRangeTest(z,c,t,zFrom,zTo,zBy,cFrom,cTo,cBy,tFrom,tTo,tBy); 
     977 
     978    // test bad combination of zct's - choosing beyond end of z's 
     979    try { 
     980      z=7; c=7; t=7; zFrom=3; zTo=7; zBy=4; cFrom=0; cTo=6; cBy=1; tFrom=0; tTo=6; tBy=1; 
     981      memorySpecifyRangeTest(z,c,t,zFrom,zTo,zBy,cFrom,cTo,cBy,tFrom,tTo,tBy); 
     982      fail(); 
     983    } catch (IllegalArgumentException e) { 
     984      assertTrue(true); 
     985    } 
    895986  } 
    896987   
     
    9411032        } 
    9421033  } 
    943  
    9441034   
    9451035  @Test 
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