Changeset 7668 for trunk/projects


Ignore:
Timestamp:
03/22/11 17:06:13 (9 years ago)
Author:
curtis
Message:

Clean up headers, and add a script to check them.

Location:
trunk/projects
Files:
266 edited

Legend:

Unmodified
Added
Removed
  • trunk/projects/cppwrap-maven-plugin/src/main/java/loci/maven/plugin/cppwrap/CppWrapMojo.java

    r7635 r7668  
    5151 * Goal which creates a C++ project wrapping a Maven Java project. 
    5252 * 
    53  * Portions of this mojo we adapted from the exec-maven-plugin's ExecJavaMojo, 
     53 * Portions of this mojo were adapted from exec-maven-plugin's ExecJavaMojo. 
     54 * 
     55 * <dl><dt><b>Source code:</b></dt> 
     56 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/cppwrap-maven-plugin/src/main/java/loci/maven/plugin/cppwrap/CppWrapMojo.java">Trac</a>, 
     57 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/cppwrap-maven-plugin/src/main/java/loci/maven/plugin/cppwrap/CppWrapMojo.java">SVN</a></dd></dl> 
    5458 * 
    5559 * @author Curtis Rueden 
  • trunk/projects/curve-fitter/src/main/java/loci/curvefitter/AbstractCurveFitter.java

    r7639 r7668  
    3939 * 
    4040 * @author Aivar Grislis 
    41  * 
    4241 */ 
    4342public abstract class AbstractCurveFitter implements ICurveFitter { 
  • trunk/projects/curve-fitter/src/main/java/loci/curvefitter/AkutanCurveFitter.java

    r7639 r7668  
    4747 * 
    4848 * <dl><dt><b>Source code:</b></dt> 
    49  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/AkutanCurveFitter.java">Trac</a>, 
    50  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/AkutanCurveFitter.java">SVN</a></dd></dl> 
     49 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/AkutanCurveFitter.java">Trac</a>, 
     50 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/AkutanCurveFitter.java">SVN</a></dd></dl> 
    5151 * 
    5252 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/curve-fitter/src/main/java/loci/curvefitter/CurveFitData.java

    r7639 r7668  
    3939 * 
    4040 * <dl><dt><b>Source code:</b></dt> 
    41  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/CurveFitData.java">Trac</a>, 
    42  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/CurveFitData.java">SVN</a></dd></dl> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/CurveFitData.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/CurveFitData.java">SVN</a></dd></dl> 
    4343 * 
    4444 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayCurveFitter.java

    r7639 r7668  
    4343 * 
    4444 * <dl><dt><b>Source code:</b></dt> 
    45  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayCurveFitter.java">Trac</a>, 
    46  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayCurveFitter.java">SVN</a></dd></dl> 
     45 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayCurveFitter.java">Trac</a>, 
     46 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayCurveFitter.java">SVN</a></dd></dl> 
    4747 * 
    4848 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayNRCurveFitter.java

    r7639 r7668  
    4343 * 
    4444 * <dl><dt><b>Source code:</b></dt> 
    45  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayNRCurveFitter.java">Trac</a>, 
    46  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayNRCurveFitter.java">SVN</a></dd></dl> 
     45 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayNRCurveFitter.java">Trac</a>, 
     46 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayNRCurveFitter.java">SVN</a></dd></dl> 
    4747 * 
    4848 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/curve-fitter/src/main/java/loci/curvefitter/MarkwardtCurveFitter.java

    r7639 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/MarkwardtCurveFitter.java">Trac</a>, 
    45  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/MarkwardtCurveFitter.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/MarkwardtCurveFitter.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/MarkwardtCurveFitter.java">SVN</a></dd></dl> 
    4646 * 
    4747 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/curve-fitter/src/main/java/loci/curvefitter/SLIMCurveFitter.java

    r7642 r7668  
    4545 * 
    4646 * <dl><dt><b>Source code:</b></dt> 
    47  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayNRCurveFitter.java">Trac</a>, 
    48  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayNRCurveFitter.java">SVN</a></dd></dl> 
     47 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/SLIMCurveFitter.java">Trac</a>, 
     48 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/curve-fitter/src/main/java/loci/curvefitter/SLIMCurveFitter.java">SVN</a></dd></dl> 
    4949 * 
    5050 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/Detector.java

    r7639 r7668  
    4747 * 
    4848 * <dl><dt><b>Source code:</b></dt> 
    49  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/Detector.java">Trac</a>, 
    50  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/flow-cytometry/src/main/java/apps/flow/Detector.java">SVN</a></dd></dl> 
     49 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/Detector.java">Trac</a>, 
     50 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/Detector.java">SVN</a></dd></dl> 
    5151 * 
    5252 * @author Hidayath Ansari 
  • trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/FlowCytometry.java

    r7639 r7668  
    9393 * 
    9494 * <dl><dt><b>Source code:</b></dt> 
    95  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/Slice.java">Trac</a>, 
    96  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/flow-cytometry/src/main/java/apps/flow/Slice.java">SVN</a></dd></dl> 
     95 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/FlowCytometry.java">Trac</a>, 
     96 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/FlowCytometry.java">SVN</a></dd></dl> 
    9797 * 
    9898 * @author Hidayath Ansari 
  • trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/Particle.java

    r7639 r7668  
    3939 * 
    4040 * <dl><dt><b>Source code:</b></dt> 
    41  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/Particle.java">Trac</a>, 
    42  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/flow-cytometry/src/main/java/apps/flow/Particle.java">SVN</a></dd></dl> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/Particle.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/Particle.java">SVN</a></dd></dl> 
    4343 * 
    4444 * @author Hidayath Ansari 
  • trunk/projects/jar2lib/src/main/java/loci/jar2lib/ClassList.java

    r7639 r7668  
    4949 * 
    5050 * <dl><dt><b>Source code:</b></dt> 
    51  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/ClassList.java">Trac</a>, 
    52  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/jar2lib/src/main/java/loci/jar2lib/ClassList.java">SVN</a></dd></dl> 
     51 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/ClassList.java">Trac</a>, 
     52 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/jar2lib/src/main/java/loci/jar2lib/ClassList.java">SVN</a></dd></dl> 
    5353 * 
    5454 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/jar2lib/src/main/java/loci/jar2lib/FixProxies.java

    r7639 r7668  
    4747 * 
    4848 * <dl><dt><b>Source code:</b></dt> 
    49  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/FixProxies.java">Trac</a>, 
    50  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/jar2lib/src/main/java/loci/jar2lib/FixProxies.java">SVN</a></dd></dl> 
     49 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/FixProxies.java">Trac</a>, 
     50 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/jar2lib/src/main/java/loci/jar2lib/FixProxies.java">SVN</a></dd></dl> 
    5151 * 
    5252 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/jar2lib/src/main/java/loci/jar2lib/Jar2Lib.java

    r7639 r7668  
    5757 * 
    5858 * <dl><dt><b>Source code:</b></dt> 
    59  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/Jar2Lib.java">Trac</a>, 
    60  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/jar2lib/src/main/java/loci/jar2lib/Jar2Lib.java">SVN</a></dd></dl> 
     59 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/Jar2Lib.java">Trac</a>, 
     60 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/jar2lib/src/main/java/loci/jar2lib/Jar2Lib.java">SVN</a></dd></dl> 
    6161 * 
    6262 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/jar2lib/src/main/java/loci/jar2lib/StringReplace.java

    r7639 r7668  
    4848 * 
    4949 * <dl><dt><b>Source code:</b></dt> 
    50  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/StringReplace.java">Trac</a>, 
    51  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/jar2lib/src/main/java/loci/jar2lib/StringReplace.java">SVN</a></dd></dl> 
     50 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/StringReplace.java">Trac</a>, 
     51 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/jar2lib/src/main/java/loci/jar2lib/StringReplace.java">SVN</a></dd></dl> 
    5252 * 
    5353 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityAutogen.java

    r7635 r7668  
    5252 * 
    5353 * <dl><dt><b>Source code:</b></dt> 
    54  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityAutogen.java">Trac</a>, 
    55  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityAutogen.java">SVN</a></dd></dl> 
     54 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityAutogen.java">Trac</a>, 
     55 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityAutogen.java">SVN</a></dd></dl> 
    5656 * 
    5757 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityException.java

    r6926 r7668  
    4040 * 
    4141 * <dl><dt><b>Source code:</b></dt> 
    42  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityException.java">Trac</a>, 
    43  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityException.java">SVN</a></dd></dl> 
     42 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityException.java">Trac</a>, 
     43 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityException.java">SVN</a></dd></dl> 
    4444 * 
    4545 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityTools.java

    r6926 r7668  
    5252 * 
    5353 * <dl><dt><b>Source code:</b></dt> 
    54  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityTools.java">Trac</a>, 
    55  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityTools.java">SVN</a></dd></dl> 
     54 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityTools.java">Trac</a>, 
     55 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityTools.java">SVN</a></dd></dl> 
    5656 * 
    5757 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/loci-checks/src/main/java/loci/checks/About.java

    r7639 r7668  
    4141 * 
    4242 * <dl><dt><b>Source code:</b></dt> 
    43  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/loci-checks/src/main/java/loci/checks/About.java">Trac</a>, 
    44  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/loci-checks/src/main/java/loci/checks/About.java">SVN</a></dd></dl> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/loci-checks/src/main/java/loci/checks/About.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/loci-checks/src/main/java/loci/checks/About.java">SVN</a></dd></dl> 
    4545 * 
    4646 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/loci-checks/src/main/java/loci/checks/BlankLinesCheck.java

    r7639 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/loci-checks/src/main/java/loci/checks/BlankLinesCheck.java">Trac</a>, 
    45  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/loci-checks/src/main/java/loci/checks/BlankLinesCheck.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/loci-checks/src/main/java/loci/checks/BlankLinesCheck.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/loci-checks/src/main/java/loci/checks/BlankLinesCheck.java">SVN</a></dd></dl> 
    4646 * 
    4747 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/misc-plugins/src/main/java/Export_As_Text.java

    r7639 r7668  
    5050 * 
    5151 * <dl><dt><b>Source code:</b></dt> 
    52  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/misc-plugins/src/main/java/Export_As_Text.java">Trac</a>, 
    53  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/misc-plugins/src/main/java/Export_As_Text.java">SVN</a></dd></dl> 
     52 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/misc-plugins/src/main/java/Export_As_Text.java">Trac</a>, 
     53 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/misc-plugins/src/main/java/Export_As_Text.java">SVN</a></dd></dl> 
    5454 * 
    5555 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/misc-plugins/src/main/java/Roi_Map.java

    r7639 r7668  
    5151 * 
    5252 * <dl><dt><b>Source code:</b></dt> 
    53  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/misc-plugins/src/main/java/Roi_Map.java">Trac</a>, 
    54  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/misc-plugins/src/main/java/Roi_Map.java">SVN</a></dd></dl> 
     53 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/misc-plugins/src/main/java/Roi_Map.java">Trac</a>, 
     54 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/misc-plugins/src/main/java/Roi_Map.java">SVN</a></dd></dl> 
    5555 * 
    5656 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plotter/data/MakeData.java

    r4953 r7668  
    3030 * 
    3131 * <dl><dt><b>Source code:</b></dt> 
    32  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/data/MakeData.java">Trac</a>, 
    33  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/data/MakeData.java">SVN</a></dd></dl> 
     32 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/data/MakeData.java">Trac</a>, 
     33 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/data/MakeData.java">SVN</a></dd></dl> 
    3434 * 
    3535 * @author Eric Kjellman egkjellman at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/ColorWidget.java

    r5093 r7668  
    6060 * 
    6161 * <dl><dt><b>Source code:</b></dt> 
    62  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/ColorWidget.java">Trac</a>, 
    63  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/ColorWidget.java">SVN</a></dd></dl> 
     62 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/ColorWidget.java">Trac</a>, 
     63 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/ColorWidget.java">SVN</a></dd></dl> 
    6464 * 
    6565 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/MouseBehaviorButtons.java

    r5093 r7668  
    4343 * 
    4444 * <dl><dt><b>Source code:</b></dt> 
    45  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/MouseBehaviorButtons.java">Trac</a>, 
    46  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/MouseBehaviorButtons.java">SVN</a></dd></dl> 
     45 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/MouseBehaviorButtons.java">Trac</a>, 
     46 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/MouseBehaviorButtons.java">SVN</a></dd></dl> 
    4747 * 
    4848 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/SlimData.java

    r5372 r7668  
    6363 * 
    6464 * <dl><dt><b>Source code:</b></dt> 
    65  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/SlimData.java">Trac</a>, 
    66  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/SlimData.java">SVN</a></dd></dl> 
     65 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/SlimData.java">Trac</a>, 
     66 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/SlimData.java">SVN</a></dd></dl> 
    6767 * 
    6868 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/SlimPlotter.java

    r5361 r7668  
     1// 
    12// SlimPlotter.java 
    23// 
     
    111112 * 
    112113 * <dl><dt><b>Source code:</b></dt> 
    113  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/SlimPlotter.java">Trac</a>, 
    114  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/SlimPlotter.java">SVN</a></dd></dl> 
     114 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/SlimPlotter.java">Trac</a>, 
     115 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/SlimPlotter.java">SVN</a></dd></dl> 
    115116 * 
    116117 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/SlimTypes.java

    r5093 r7668  
    3939 * 
    4040 * <dl><dt><b>Source code:</b></dt> 
    41  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/SlimTypes.java">Trac</a>, 
    42  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/SlimTypes.java">SVN</a></dd></dl> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/SlimTypes.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/SlimTypes.java">SVN</a></dd></dl> 
    4343 * 
    4444 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/SpringUtilities.java

    r5093 r7668  
    6969 * 
    7070 * <dl><dt><b>Source code:</b></dt> 
    71  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/SpringUtilities.java">Trac</a>, 
    72  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/SpringUtilities.java">SVN</a></dd></dl> 
     71 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/SpringUtilities.java">Trac</a>, 
     72 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/SpringUtilities.java">SVN</a></dd></dl> 
    7373 */ 
    7474public class SpringUtilities { 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/TextTransfer.java

    r5093 r7668  
    3939 * 
    4040 * <dl><dt><b>Source code:</b></dt> 
    41  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/TextTransfer.java">Trac</a>, 
    42  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/TextTransfer.java">SVN</a></dd></dl> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/TextTransfer.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/TextTransfer.java">SVN</a></dd></dl> 
    4343 */ 
    4444public final class TextTransfer implements ClipboardOwner { 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/TwoDPane.java

    r5093 r7668  
    9191 * 
    9292 * <dl><dt><b>Source code:</b></dt> 
    93  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/TwoDPane.java">Trac</a>, 
    94  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/TwoDPane.java">SVN</a></dd></dl> 
     93 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/TwoDPane.java">Trac</a>, 
     94 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/TwoDPane.java">SVN</a></dd></dl> 
    9595 * 
    9696 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/fit/BurnInRenderer.java

    r5030 r7668  
    3333 * 
    3434 * <dl><dt><b>Source code:</b></dt> 
    35  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/fit/BurnInRenderer.java">Trac</a>, 
    36  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/fit/BurnInRenderer.java">SVN</a></dd></dl> 
     35 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/BurnInRenderer.java">Trac</a>, 
     36 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/BurnInRenderer.java">SVN</a></dd></dl> 
    3737 * 
    3838 * @author Eric Kjellman egkjellman at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveCollection.java

    r5030 r7668  
    3535 * 
    3636 * <dl><dt><b>Source code:</b></dt> 
    37  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/fit/CurveCollection.java">Trac</a>, 
    38  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/fit/CurveCollection.java">SVN</a></dd></dl> 
     37 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveCollection.java">Trac</a>, 
     38 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveCollection.java">SVN</a></dd></dl> 
    3939 * 
    4040 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveEvent.java

    r4953 r7668  
    3232 * 
    3333 * <dl><dt><b>Source code:</b></dt> 
    34  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/fit/CurveEvent.java">Trac</a>, 
    35  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/fit/CurveEvent.java">SVN</a></dd></dl> 
     34 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveEvent.java">Trac</a>, 
     35 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveEvent.java">SVN</a></dd></dl> 
    3636 */ 
    3737public class CurveEvent extends EventObject { 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveFitter.java

    r4953 r7668  
    2929 * 
    3030 * <dl><dt><b>Source code:</b></dt> 
    31  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/fit/CurveFitter.java">Trac</a>, 
    32  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/fit/CurveFitter.java">SVN</a></dd></dl> 
     31 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveFitter.java">Trac</a>, 
     32 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveFitter.java">SVN</a></dd></dl> 
    3333 * 
    3434 * @author Eric Kjellman egkjellman at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveFitterTester.java

    r5093 r7668  
    3434 * 
    3535 * <dl><dt><b>Source code:</b></dt> 
    36  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/fit/CurveFitterTester.java">Trac</a>, 
    37  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/fit/CurveFitterTester.java">SVN</a></dd></dl> 
     36 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveFitterTester.java">Trac</a>, 
     37 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveFitterTester.java">SVN</a></dd></dl> 
    3838 * 
    3939 * @author Eric Kjellman egkjellman at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveListener.java

    r4953 r7668  
    2929 * 
    3030 * <dl><dt><b>Source code:</b></dt> 
    31  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/fit/CurveListener.java">Trac</a>, 
    32  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/fit/CurveListener.java">SVN</a></dd></dl> 
     31 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveListener.java">Trac</a>, 
     32 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveListener.java">SVN</a></dd></dl> 
    3333 */ 
    3434public interface CurveListener { 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveRenderer.java

    r5030 r7668  
    2929 * 
    3030 * <dl><dt><b>Source code:</b></dt> 
    31  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/fit/CurveRenderer.java">Trac</a>, 
    32  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/fit/CurveRenderer.java">SVN</a></dd></dl> 
     31 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveRenderer.java">Trac</a>, 
     32 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveRenderer.java">SVN</a></dd></dl> 
    3333 * 
    3434 * @author Eric Kjellman egkjellman at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveReporter.java

    r4953 r7668  
    2929 * 
    3030 * <dl><dt><b>Source code:</b></dt> 
    31  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/fit/CurveReporter.java">Trac</a>, 
    32  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/fit/CurveReporter.java">SVN</a></dd></dl> 
     31 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveReporter.java">Trac</a>, 
     32 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveReporter.java">SVN</a></dd></dl> 
    3333 */ 
    3434public interface CurveReporter { 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/fit/GACurveFitter.java

    r4953 r7668  
    3131 * 
    3232 * <dl><dt><b>Source code:</b></dt> 
    33  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/fit/GACurveFitter.java">Trac</a>, 
    34  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/fit/GACurveFitter.java">SVN</a></dd></dl> 
     33 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/GACurveFitter.java">Trac</a>, 
     34 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/GACurveFitter.java">SVN</a></dd></dl> 
    3535 * 
    3636 * @author Eric Kjellman egkjellman at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/fit/ICurveFitter.java

    r4953 r7668  
    2929 * 
    3030 * <dl><dt><b>Source code:</b></dt> 
    31  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/fit/ICurveFitter.java">Trac</a>, 
    32  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/fit/ICurveFitter.java">SVN</a></dd></dl> 
     31 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/ICurveFitter.java">Trac</a>, 
     32 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/ICurveFitter.java">SVN</a></dd></dl> 
    3333 * 
    3434 * @author Eric Kjellman egkjellman at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/fit/ICurveRenderer.java

    r4953 r7668  
    2929 * 
    3030 * <dl><dt><b>Source code:</b></dt> 
    31  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/fit/ICurveRenderer.java">Trac</a>, 
    32  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/fit/ICurveRenderer.java">SVN</a></dd></dl> 
     31 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/ICurveRenderer.java">Trac</a>, 
     32 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/ICurveRenderer.java">SVN</a></dd></dl> 
    3333 * 
    3434 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/fit/LMCurveFitter.java

    r6897 r7668  
    3636 * 
    3737 * <dl><dt><b>Source code:</b></dt> 
    38  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/fit/LMCurveFitter.java">Trac</a>, 
    39  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/fit/LMCurveFitter.java">SVN</a></dd></dl> 
     38 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/LMCurveFitter.java">Trac</a>, 
     39 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/LMCurveFitter.java">SVN</a></dd></dl> 
    4040 * 
    4141 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/slim-plotter/src/main/java/loci/slim/fit/RendererSwitcher.java

    r4953 r7668  
    3030 * 
    3131 * <dl><dt><b>Source code:</b></dt> 
    32  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/fit/RendererSwitcher.java">Trac</a>, 
    33  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/fit/RendererSwitcher.java">SVN</a></dd></dl> 
     32 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/RendererSwitcher.java">Trac</a>, 
     33 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plotter/src/main/java/loci/slim/fit/RendererSwitcher.java">SVN</a></dd></dl> 
    3434 * 
    3535 * @author Curtis Rueden ctrueden at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixel.java

    r7059 r7668  
    3939 * 
    4040 * <dl><dt><b>Source code:</b></dt> 
    41  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/slim-plugin/src/main/java/loci/ChunkyPixel.java">Trac</a>, 
    42  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/slim-plugin/src/main/java/loci/ChunkyPixel.java">SVN</a></dd></dl> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixel.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixel.java">SVN</a></dd></dl> 
    4343 * 
    4444 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixelEffectIterator.java

    r7059 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/slim-plugin/src/main/java/loci/ChunkyPixelEffectIterator.java">Trac</a>, 
    45  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/slim-plugin/src/main/java/loci/ChunkyPixelEffectIterator.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixelEffectIterator.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixelEffectIterator.java">SVN</a></dd></dl> 
    4646 * 
    4747 * @author Aivar Grislis grislis at wisc.edu 
     
    5555    IChunkyPixelTable m_table; 
    5656    ChunkyPixel m_chunkyPixel; 
    57      
     57 
    5858    public ChunkyPixelEffectIterator(IChunkyPixelTable table, int width, int height) { 
    5959        m_table = table; 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixelTableImpl.java

    r7059 r7668  
    3939 * 
    4040 * <dl><dt><b>Source code:</b></dt> 
    41  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/slim-plugin/src/main/java/loci/ChunkyPixelTableImpl.java">Trac</a>, 
    42  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/slim-plugin/src/main/java/loci/ChunkyPixelTableImpl.java">SVN</a></dd></dl> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixelTableImpl.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixelTableImpl.java">SVN</a></dd></dl> 
    4343 * 
    4444 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/CursorHelper.java

    r7643 r7668  
     1// 
     2// CursorHelper.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim; 
     
    1140 
    1241/** 
     42 * Based on TRI2 TRCursors.c.  Comments in quotes are from that source file. 
    1343 * 
    14  * Based on TRI2 TRCursors.c.  Comments in quotes are from that source file. 
     44 * <dl><dt><b>Source code:</b></dt> 
     45 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/CursorHelper.java">Trac</a>, 
     46 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/CursorHelper.java">SVN</a></dd></dl> 
    1547 * 
    1648 * @author aivar 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/DecayGraph.java

    r7649 r7668  
    6767 * 
    6868 * <dl><dt><b>Source code:</b></dt> 
    69  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/slim-plugin/src/main/java/loci/DecayGraph.java">Trac</a>, 
    70  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/slim-plugin/src/main/java/loci/DecayGraph.java">SVN</a></dd></dl> 
     69 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/DecayGraph.java">Trac</a>, 
     70 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/DecayGraph.java">SVN</a></dd></dl> 
    7171 * 
    7272 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/Excitation.java

    r7644 r7668  
     1// 
     2// Excitation.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim; 
    736 
    837/** 
     38 * TODO 
    939 * 
    10  * @author aivar 
     40 * <dl><dt><b>Source code:</b></dt> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/Excitation.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/Excitation.java">SVN</a></dd></dl> 
     43 * 
     44 * @author Aivar Grislis 
    1145 */ 
    1246public class Excitation { 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/ExcitationFileHandler.java

    r7645 r7668  
     1// 
     2// ExcitationFileHandler.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim; 
     
    2857 
    2958/** 
     59 * TODO 
     60 * 
     61 * <dl><dt><b>Source code:</b></dt> 
     62 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ExcitationFileHandler.java">Trac</a>, 
     63 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/ExcitationFileHandler.java">SVN</a></dd></dl> 
    3064 * 
    3165 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/GrayScaleImage.java

    r7604 r7668  
    5353 * also allows the user to look at all the channels and pick a channel for the 
    5454 * fit. 
     55 * 
     56 * <dl><dt><b>Source code:</b></dt> 
     57 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/GrayScaleImage.java">Trac</a>, 
     58 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/GrayScaleImage.java">SVN</a></dd></dl> 
    5559 * 
    5660 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/IChunkyPixelTable.java

    r7059 r7668  
    3939 * 
    4040 * <dl><dt><b>Source code:</b></dt> 
    41  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/slim-plugin/src/main/java/loci/IChunkyPixelTable.java">Trac</a>, 
    42  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/slim-plugin/src/main/java/loci/IChunkyPixelTable.java">SVN</a></dd></dl> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/IChunkyPixelTable.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/IChunkyPixelTable.java">SVN</a></dd></dl> 
    4343 * 
    4444 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/IGrayScaleImage.java

    r7203 r7668  
    4040 * set the current channel selection.  Used for thresholding. 
    4141 * 
     42 * <dl><dt><b>Source code:</b></dt> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/IGrayScaleImage.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/IGrayScaleImage.java">SVN</a></dd></dl> 
     45 * 
    4246 * @author Aivar Grislis 
    4347 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/ISelectListener.java

    r7204 r7668  
    3939 * select a pixel. 
    4040 * 
     41 * <dl><dt><b>Source code:</b></dt> 
     42 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ISelectListener.java">Trac</a>, 
     43 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/ISelectListener.java">SVN</a></dd></dl> 
     44 * 
    4145 * @author Aivar Grislis 
    4246 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/MyStackWindow.java

    r7205 r7668  
    4646 * A kludge because StackWindow has issues. 
    4747 * 
     48 * <dl><dt><b>Source code:</b></dt> 
     49 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/MyStackWindow.java">Trac</a>, 
     50 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/MyStackWindow.java">SVN</a></dd></dl> 
     51 * 
    4852 * @author Aivar Grislis 
    4953 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java

    r7663 r7668  
    8686//TODO tidy up SLIMProcessor 
    8787/** 
    88  * SLIMProcessor is the main class of the SLIM Plugin.  It was originally just thrown 
    89  * together to get something working, with some code/techniques borrowed from SLIM Plotter. 
    90  * Parts of this code are ugly & experimental. 
     88 * SLIMProcessor is the main class of the SLIM Plugin. It was originally just 
     89 * thrown together to get something working, with some code/techniques borrowed 
     90 * from SLIM Plotter. Parts of this code are ugly and experimental. 
     91 * 
     92 * <dl><dt><b>Source code:</b></dt> 
     93 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java">Trac</a>, 
     94 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java">SVN</a></dd></dl> 
    9195 * 
    9296 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/SLIM_PlugIn.java

    r7391 r7668  
     1// 
     2// SLIM_PlugIn.java 
     3// 
     4 
    15/* 
    26SLIMPlugin for combined spectral-lifetime image analysis. 
     
    3337import ij.ImageJ; 
    3438import ij.plugin.PlugIn; 
     39 
    3540/** 
     41 * TODO 
    3642 * 
    37  * @author aivar 
     43 * <dl><dt><b>Source code:</b></dt> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/SLIM_PlugIn.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/SLIM_PlugIn.java">SVN</a></dd></dl> 
     46 * 
     47 * @author Aivar Grislis 
    3848 */ 
    3949public class SLIM_PlugIn implements PlugIn { 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/ISLIMAnalyzer.java

    r7295 r7668  
     1// 
     2// ISLIMAnalyzer.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim.analysis; 
     
    1443/** 
    1544 * An interface for analyzing the results of a SLIM Plugin fit. 
    16  *  
     45 * 
     46 * <dl><dt><b>Source code:</b></dt> 
     47 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/ISLIMAnalyzer.java">Trac</a>, 
     48 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/ISLIMAnalyzer.java">SVN</a></dd></dl> 
     49 * 
    1750 * @author Aivar Grislis 
    1851 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalysis.java

    r7658 r7668  
     1// 
     2// SLIMAnalysis.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim.analysis; 
     
    2251 
    2352/** 
     53 * TODO 
     54 * 
     55 * <dl><dt><b>Source code:</b></dt> 
     56 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalysis.java">Trac</a>, 
     57 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalysis.java">SVN</a></dd></dl> 
    2458 * 
    2559 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalyzer.java

    r7199 r7668  
     1// 
     2// SLIMAnalyzer.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim.analysis; 
     
    2049 *  @Name("Analyzer") 
    2150 * 
     51 * <dl><dt><b>Source code:</b></dt> 
     52 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalyzer.java">Trac</a>, 
     53 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalyzer.java">SVN</a></dd></dl> 
     54 * 
    2255 * @author Aivar Grislis 
    2356 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java

    r7658 r7668  
    6262/** 
    6363 * A plugin within a plugin, this is used to display the fit results. 
     64 * 
     65 * <dl><dt><b>Source code:</b></dt> 
     66 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java">Trac</a>, 
     67 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java">SVN</a></dd></dl> 
    6468 * 
    6569 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/ExportToText.java

    r7663 r7668  
     1// 
     2// ExportToText.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim.analysis.plugins; 
     
    3059/** 
    3160 * Exports to text for further analysis of SLIMPlugin results. 
     61 * 
     62 * <dl><dt><b>Source code:</b></dt> 
     63 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/ExportToText.java">Trac</a>, 
     64 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/ExportToText.java">SVN</a></dd></dl> 
    3265 * 
    3366 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/VisADAnalysisPlugin.java

    r7616 r7668  
     1// 
     2// VisADAnalysisPlugin.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim.analysis.plugins; 
     
    2554 * This will run on a separate thread, control returns to the caller right away. 
    2655 * 
     56 * <dl><dt><b>Source code:</b></dt> 
     57 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/VisADAnalysisPlugin.java">Trac</a>, 
     58 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/VisADAnalysisPlugin.java">SVN</a></dd></dl> 
     59 * 
    2760 * @author Aivar Grislis 
    2861 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/binning/ISLIMBinner.java

    r7300 r7668  
    4141 * An interface for binning SLIM Plugin data before the fit. 
    4242 * 
     43 * <dl><dt><b>Source code:</b></dt> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/ISLIMBinner.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/ISLIMBinner.java">SVN</a></dd></dl> 
     46 * 
    4347 * @author Aivar Grislis 
    4448 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/binning/SLIMBinner.java

    r7301 r7668  
    4949 *  @SLIMBinner("Binner") 
    5050 * 
     51 * <dl><dt><b>Source code:</b></dt> 
     52 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/SLIMBinner.java">Trac</a>, 
     53 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/SLIMBinner.java">SVN</a></dd></dl> 
     54 * 
    5155 * @author Aivar Grislis 
    5256 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/binning/SLIMBinning.java

    r7302 r7668  
    4747 
    4848/** 
     49 * TODO 
     50 * 
     51 * <dl><dt><b>Source code:</b></dt> 
     52 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/SLIMBinning.java">Trac</a>, 
     53 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/SLIMBinning.java">SVN</a></dd></dl> 
    4954 * 
    5055 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin3x3.java

    r7303 r7668  
    4444 * A plugin within a plugin, this is used to bin the fit input. 
    4545 * 
     46 * <dl><dt><b>Source code:</b></dt> 
     47 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin3x3.java">Trac</a>, 
     48 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin3x3.java">SVN</a></dd></dl> 
     49 * 
    4650 * @author Aivar Grislis 
    4751 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin5x5.java

    r7304 r7668  
    4444 * A plugin within a plugin, this is used to bin the fit input. 
    4545 * 
     46 * <dl><dt><b>Source code:</b></dt> 
     47 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin5x5.java">Trac</a>, 
     48 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin5x5.java">SVN</a></dd></dl> 
     49 * 
    4650 * @author Aivar Grislis 
    4751 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin7x7.java

    r7600 r7668  
    11// 
    2 // Bin5x5.java 
     2// Bin7x7.java 
    33// 
    44 
     
    4444 * A plugin within a plugin, this is used to bin the fit input. 
    4545 * 
     46 * <dl><dt><b>Source code:</b></dt> 
     47 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin7x7.java">Trac</a>, 
     48 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin7x7.java">SVN</a></dd></dl> 
     49 * 
    4650 * @author Aivar Grislis 
    4751 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/BinNxN.java

    r7601 r7668  
    4545/** 
    4646 * Helper class, this is used by plugins to bin the fit input data. 
     47 * 
     48 * <dl><dt><b>Source code:</b></dt> 
     49 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/BinNxN.java">Trac</a>, 
     50 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/BinNxN.java">SVN</a></dd></dl> 
    4751 * 
    4852 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/ColorBar.java

    r7403 r7668  
    4343 * Displays a color bar with the current colorization scheme.  Live, 
    4444 * reflects ongoing changes. 
     45 * 
     46 * <dl><dt><b>Source code:</b></dt> 
     47 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/ColorBar.java">Trac</a>, 
     48 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/ColorBar.java">SVN</a></dd></dl> 
    4549 * 
    4650 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizer.java

    r7602 r7668  
    4242 
    4343/** 
    44  * Displays a colorized lifetime image and a UI that shows the lifetime histogram 
    45  * and controls the colorization. 
     44 * Displays a colorized lifetime image and a UI that shows the lifetime 
     45 * histogram and controls the colorization. 
     46 * 
     47 * <dl><dt><b>Source code:</b></dt> 
     48 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizer.java">Trac</a>, 
     49 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizer.java">SVN</a></dd></dl> 
    4650 * 
    4751 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizerUI.java

    r7597 r7668  
    4343 * used to colorize the lifetime data, and an input panel that allows the user 
    4444 * to control the colorization. 
     45 * 
     46 * <dl><dt><b>Source code:</b></dt> 
     47 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizerUI.java">Trac</a>, 
     48 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizerUI.java">SVN</a></dd></dl> 
    4549 * 
    4650 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/FiveColorColorize.java

    r7212 r7668  
    3939/** 
    4040 * Colorizes data based on a sequence of five colors. 
     41 * 
     42 * <dl><dt><b>Source code:</b></dt> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/FiveColorColorize.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/FiveColorColorize.java">SVN</a></dd></dl> 
    4145 * 
    4246 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/Histogram.java

    r7403 r7668  
    4848 * 
    4949 * <dl><dt><b>Source code:</b></dt> 
    50  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/slim-plugin/src/main/java/loci/colorizer/Histogram.java">Trac</a>, 
    51  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/slim-plugin/src/main/java/loci/colorizer/Histogram.java">SVN</a></dd></dl> 
     50 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/Histogram.java">Trac</a>, 
     51 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/Histogram.java">SVN</a></dd></dl> 
    5252 * 
    5353 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/IColorize.java

    r7403 r7668  
    4141 * 
    4242 * <dl><dt><b>Source code:</b></dt> 
    43  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/slim-plugin/src/main/java/loci/colorizer/IColorize.java">Trac</a>, 
    44  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/slim-plugin/src/main/java/loci/colorizer/IColorize.java">SVN</a></dd></dl> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/IColorize.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/IColorize.java">SVN</a></dd></dl> 
    4545 * 
    4646 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/IColorizeRangeListener.java

    r7403 r7668  
    3838 * Passes around settings changes. 
    3939 * 
     40 * <dl><dt><b>Source code:</b></dt> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/IColorizeRangeListener.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/IColorizeRangeListener.java">SVN</a></dd></dl> 
     43 * 
    4044 * @author Aivar Grislis grislis at wisc.edu 
    4145 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/InputPanel.java

    r7403 r7668  
    5353 * range selection.  When automatic mode is off it allows the user to enter 
    5454 * minimum and maximum values. 
     55 * 
     56 * <dl><dt><b>Source code:</b></dt> 
     57 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/InputPanel.java">Trac</a>, 
     58 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/InputPanel.java">SVN</a></dd></dl> 
    5559 * 
    5660 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/LifetimeHistogram.java

    r7403 r7668  
    7878 * 
    7979 * <dl><dt><b>Source code:</b></dt> 
    80  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/slim-plugin/src/main/java/loci/colorizer/LifetimeHistogram.java">Trac</a>, 
    81  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/slim-plugin/src/main/java/loci/colorizer/LifetimeHistogram.java">SVN</a></dd></dl> 
     80 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/LifetimeHistogram.java">Trac</a>, 
     81 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/LifetimeHistogram.java">SVN</a></dd></dl> 
    8282 * 
    8383 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/MultiColorColorize.java

    r7215 r7668  
    3939/** 
    4040 * Abstract base class for colorizers that interpolate between colors. 
     41 * 
     42 * <dl><dt><b>Source code:</b></dt> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/MultiColorColorize.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/MultiColorColorize.java">SVN</a></dd></dl> 
    4145 * 
    4246 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/ThreeColorColorize.java

    r7403 r7668  
    3939/** 
    4040 * Colorizes data based on a sequence of three colors. 
     41 * 
     42 * <dl><dt><b>Source code:</b></dt> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/ThreeColorColorize.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/ThreeColorColorize.java">SVN</a></dd></dl> 
    4145 * 
    4246 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationGraph.java

    r7646 r7668  
     1// 
     2// ExcitationGraph.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim.ui; 
     
    3665 
    3766/** 
     67 * TODO 
     68 * 
     69 * <dl><dt><b>Source code:</b></dt> 
     70 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationGraph.java">Trac</a>, 
     71 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationGraph.java">SVN</a></dd></dl> 
    3872 * 
    3973 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationPanel.java

    r7647 r7668  
     1// 
     2// ExcitationPanel.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim.ui; 
     
    3564 
    3665/** 
     66 * TODO 
     67 * 
     68 * <dl><dt><b>Source code:</b></dt> 
     69 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationPanel.java">Trac</a>, 
     70 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationPanel.java">SVN</a></dd></dl> 
    3771 * 
    3872 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IStartStopBaseListener.java

    r7648 r7668  
     1// 
     2// IStartStopBaseListener.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim.ui; 
    736 
    837/** 
     38 * TODO 
    939 * 
    10  * @author aivar 
     40 * <dl><dt><b>Source code:</b></dt> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IStartStopBaseListener.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IStartStopBaseListener.java">SVN</a></dd></dl> 
     43 * 
     44 * @author Aivar Grislis 
    1145 */ 
    1246public interface IStartStopBaseListener { 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IStartStopListener.java

    r7061 r7668  
    3939 * 
    4040 * <dl><dt><b>Source code:</b></dt> 
    41  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/slim-plugin/src/main/java/loci/IStartStopListener.java">Trac</a>, 
    42  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/slim-plugin/src/main/java/loci/IStartStopListener.java">SVN</a></dd></dl> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IStartStopListener.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IStartStopListener.java">SVN</a></dd></dl> 
    4343 * 
    4444 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanel.java

    r7658 r7668  
    4040 * Interface to the User Interface Panel 
    4141 * 
     42 * <dl><dt><b>Source code:</b></dt> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanel.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanel.java">SVN</a></dd></dl> 
     45 * 
    4246 * @author Aivar Grislis 
    4347 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanelListener.java

    r7115 r7668  
    3939 * 
    4040 * <dl><dt><b>Source code:</b></dt> 
    41  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanelListener.java">Trac</a>, 
    42  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanelListener.java">SVN</a></dd></dl> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanelListener.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanelListener.java">SVN</a></dd></dl> 
    4343 * 
    4444 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/ui/SpringUtilities.java

    r7080 r7668  
    6969 * 
    7070 * <dl><dt><b>Source code:</b></dt> 
    71  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/slim-plotter/src/loci/slim/SpringUtilities.java">Trac</a>, 
    72  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/slim-plotter/src/loci/slim/SpringUtilities.java">SVN</a></dd></dl> 
     71 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/SpringUtilities.java">Trac</a>, 
     72 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/SpringUtilities.java">SVN</a></dd></dl> 
    7373 */ 
    7474public class SpringUtilities { 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java

    r7658 r7668  
    7676 * 
    7777 * <dl><dt><b>Source code:</b></dt> 
    78  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java">Trac</a>, 
    79  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java">SVN</a></dd></dl> 
     78 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java">Trac</a>, 
     79 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java">SVN</a></dd></dl> 
    8080 * 
    8181 * @author Aivar Grislis grislis at wisc.edu 
  • trunk/projects/utils/src/main/java/Ascii.java

    r6936 r7668  
    3737 * 
    3838 * <dl><dt><b>Source code:</b></dt> 
    39  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/Ascii.java">Trac</a>, 
    40  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/Ascii.java">SVN</a></dd></dl> 
     39 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/Ascii.java">Trac</a>, 
     40 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/Ascii.java">SVN</a></dd></dl> 
    4141 */ 
    4242public class Ascii { 
  • trunk/projects/utils/src/main/java/Binary.java

    r6936 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/Binary.java">Trac</a>, 
    45  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/Binary.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/Binary.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/Binary.java">SVN</a></dd></dl> 
    4646 */ 
    4747public class Binary { 
  • trunk/projects/utils/src/main/java/BinaryDiff.java

    r6936 r7668  
    4444 * 
    4545 * <dl><dt><b>Source code:</b></dt> 
    46  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/BinaryDiff.java">Trac</a>, 
    47  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/BinaryDiff.java">SVN</a></dd></dl> 
     46 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/BinaryDiff.java">Trac</a>, 
     47 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/BinaryDiff.java">SVN</a></dd></dl> 
    4848 */ 
    4949public class BinaryDiff { 
  • trunk/projects/utils/src/main/java/CompareTrees.java

    r7640 r7668  
    4646 * 
    4747 * <dl><dt><b>Source code:</b></dt> 
    48  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/CompareTrees.java">Trac</a>, 
    49  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/CompareTrees.java">SVN</a></dd></dl> 
     48 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/CompareTrees.java">Trac</a>, 
     49 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/CompareTrees.java">SVN</a></dd></dl> 
    5050 */ 
    5151public class CompareTrees { 
  • trunk/projects/utils/src/main/java/DownloadURL.java

    r6936 r7668  
    4141 * 
    4242 * <dl><dt><b>Source code:</b></dt> 
    43  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/DownloadURL.java">Trac</a>, 
    44  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/DownloadURL.java">SVN</a></dd></dl> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/DownloadURL.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/DownloadURL.java">SVN</a></dd></dl> 
    4545 */ 
    4646public class DownloadURL { 
  • trunk/projects/utils/src/main/java/DumpClass.java

    r6936 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/DumpClass.java">Trac</a>, 
    45  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/DumpClass.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/DumpClass.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/DumpClass.java">SVN</a></dd></dl> 
    4646 */ 
    4747public class DumpClass { 
  • trunk/projects/utils/src/main/java/EditDistance.java

    r7640 r7668  
    4141 * 
    4242 * <dl><dt><b>Source code:</b></dt> 
    43  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/EditDistance.java">Trac</a>, 
    44  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/EditDistance.java">SVN</a></dd></dl> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/EditDistance.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/EditDistance.java">SVN</a></dd></dl> 
    4545 */ 
    4646public class EditDistance { 
  • trunk/projects/utils/src/main/java/FileOpsTest.java

    r6936 r7668  
    3939 * 
    4040 * <dl><dt><b>Source code:</b></dt> 
    41  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/FileOpsTest.java">Trac</a>, 
    42  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/FileOpsTest.java">SVN</a></dd></dl> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/FileOpsTest.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/FileOpsTest.java">SVN</a></dd></dl> 
    4343 */ 
    4444public class FileOpsTest { 
  • trunk/projects/utils/src/main/java/FixEOLSpaces.java

    r6936 r7668  
    4545 * 
    4646 * <dl><dt><b>Source code:</b></dt> 
    47  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/FixEOLSpaces.java">Trac</a>, 
    48  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/FixEOLSpaces.java">SVN</a></dd></dl> 
     47 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/FixEOLSpaces.java">Trac</a>, 
     48 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/FixEOLSpaces.java">SVN</a></dd></dl> 
    4949 */ 
    5050public class FixEOLSpaces { 
  • trunk/projects/utils/src/main/java/LineLength.java

    r7640 r7668  
    4646 * 
    4747 * <dl><dt><b>Source code:</b></dt> 
    48  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/LineLength.java">Trac</a>, 
    49  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/LineLength.java">SVN</a></dd></dl> 
     48 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/LineLength.java">Trac</a>, 
     49 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/LineLength.java">SVN</a></dd></dl> 
    5050 */ 
    5151public class LineLength implements FileFilter { 
     
    5656  private static final String[] LOCI_HACKS = { 
    5757    " * <dd><a href=\"http://dev.loci.wisc.edu/trac/", 
    58     " * <a href=\"http://dev.loci.wisc.edu/svn/java/trunk/" 
     58    " * <a href=\"http://dev.loci.wisc.edu/svn/software/trunk/" 
    5959  }; 
    6060 
  • trunk/projects/utils/src/main/java/RandomPass.java

    r6936 r7668  
    3737 * 
    3838 * <dl><dt><b>Source code:</b></dt> 
    39  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/RandomPass.java">Trac</a>, 
    40  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/RandomPass.java">SVN</a></dd></dl> 
     39 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/RandomPass.java">Trac</a>, 
     40 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/RandomPass.java">SVN</a></dd></dl> 
    4141 */ 
    4242public class RandomPass { 
  • trunk/projects/utils/src/main/java/SortList.java

    r6936 r7668  
    4747 * 
    4848 * <dl><dt><b>Source code:</b></dt> 
    49  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/SortList.java">Trac</a>, 
    50  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/SortList.java">SVN</a></dd></dl> 
     49 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/SortList.java">Trac</a>, 
     50 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/SortList.java">SVN</a></dd></dl> 
    5151 */ 
    5252public class SortList { 
  • trunk/projects/utils/src/main/java/SysProps.java

    r6936 r7668  
    3939 * 
    4040 * <dl><dt><b>Source code:</b></dt> 
    41  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/SysProps.java">Trac</a>, 
    42  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/SysProps.java">SVN</a></dd></dl> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/SysProps.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/SysProps.java">SVN</a></dd></dl> 
    4343 */ 
    4444public class SysProps { 
  • trunk/projects/utils/src/main/java/TestMem.java

    r7640 r7668  
    5050 * 
    5151 * <dl><dt><b>Source code:</b></dt> 
    52  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/TestMem.java">Trac</a>, 
    53  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/TestMem.java">SVN</a></dd></dl> 
     52 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/TestMem.java">Trac</a>, 
     53 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/TestMem.java">SVN</a></dd></dl> 
    5454 */ 
    5555@SuppressWarnings("serial") 
  • trunk/projects/utils/src/main/java/UniqueTraces.java

    r7640 r7668  
    4343 * 
    4444 * <dl><dt><b>Source code:</b></dt> 
    45  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/UniqueTraces.java">Trac</a>, 
    46  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/UniqueTraces.java">SVN</a></dd></dl> 
     45 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/UniqueTraces.java">Trac</a>, 
     46 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/UniqueTraces.java">SVN</a></dd></dl> 
    4747 */ 
    4848public class UniqueTraces { 
  • trunk/projects/utils/src/main/java/UnusedImports.java

    r6936 r7668  
    4444 * 
    4545 * <dl><dt><b>Source code:</b></dt> 
    46  * <dd><a href="http://dev.loci.wisc.edu/trac/java/browser/trunk/projects/utils/src/main/java/UnusedImports.java">Trac</a>, 
    47  * <a href="http://dev.loci.wisc.edu/svn/java/trunk/projects/utils/src/main/java/UnusedImports.java">SVN</a></dd></dl> 
     46 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/utils/src/main/java/UnusedImports.java">Trac</a>, 
     47 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/utils/src/main/java/UnusedImports.java">SVN</a></dd></dl> 
    4848 */ 
    4949public class UnusedImports { 
  • trunk/projects/visbio/src/main/java/loci/visbio/BioDropHandler.java

    r5093 r7668  
    4444 * 
    4545 * <dl><dt><b>Source code:</b></dt> 
    46  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/BioDropHandler.java">Trac</a>, 
    47  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/BioDropHandler.java">SVN</a></dd></dl> 
     46 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/BioDropHandler.java">Trac</a>, 
     47 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/BioDropHandler.java">SVN</a></dd></dl> 
    4848 */ 
    4949public class BioDropHandler extends TransferHandler { 
  • trunk/projects/visbio/src/main/java/loci/visbio/BioTask.java

    r5093 r7668  
    4545 * 
    4646 * <dl><dt><b>Source code:</b></dt> 
    47  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/BioTask.java">Trac</a>, 
    48  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/BioTask.java">SVN</a></dd></dl> 
     47 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/BioTask.java">Trac</a>, 
     48 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/BioTask.java">SVN</a></dd></dl> 
    4949 */ 
    5050public class BioTask extends JPanel implements ActionListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/ConsoleManager.java

    r5707 r7668  
    4141 * 
    4242 * <dl><dt><b>Source code:</b></dt> 
    43  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ConsoleManager.java">Trac</a>, 
    44  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ConsoleManager.java">SVN</a></dd></dl> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ConsoleManager.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ConsoleManager.java">SVN</a></dd></dl> 
    4545 */ 
    4646public class ConsoleManager extends LogicManager implements OutputListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/ControlPanel.java

    r5093 r7668  
    3232 * 
    3333 * <dl><dt><b>Source code:</b></dt> 
    34  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ControlPanel.java">Trac</a>, 
    35  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ControlPanel.java">SVN</a></dd></dl> 
     34 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ControlPanel.java">Trac</a>, 
     35 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ControlPanel.java">SVN</a></dd></dl> 
    3636 */ 
    3737public class ControlPanel extends JPanel { 
  • trunk/projects/visbio/src/main/java/loci/visbio/ExitManager.java

    r6026 r7668  
    3434 * 
    3535 * <dl><dt><b>Source code:</b></dt> 
    36  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ExitManager.java">Trac</a>, 
    37  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ExitManager.java">SVN</a></dd></dl> 
     36 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ExitManager.java">Trac</a>, 
     37 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ExitManager.java">SVN</a></dd></dl> 
    3838 */ 
    3939public class ExitManager extends LogicManager implements WindowListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/LogicManager.java

    r5093 r7668  
    3333 * 
    3434 * <dl><dt><b>Source code:</b></dt> 
    35  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/LogicManager.java">Trac</a>, 
    36  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/LogicManager.java">SVN</a></dd></dl> 
     35 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/LogicManager.java">Trac</a>, 
     36 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/LogicManager.java">SVN</a></dd></dl> 
    3737 */ 
    3838public class LogicManager implements Saveable { 
  • trunk/projects/visbio/src/main/java/loci/visbio/MacAdapter.java

    r5093 r7668  
    3535 * 
    3636 * <dl><dt><b>Source code:</b></dt> 
    37  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/MacAdapter.java">Trac</a>, 
    38  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/MacAdapter.java">SVN</a></dd></dl> 
     37 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/MacAdapter.java">Trac</a>, 
     38 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/MacAdapter.java">SVN</a></dd></dl> 
    3939 */ 
    4040public class MacAdapter extends ApplicationAdapter { 
  • trunk/projects/visbio/src/main/java/loci/visbio/PanelManager.java

    r5093 r7668  
    4141 * 
    4242 * <dl><dt><b>Source code:</b></dt> 
    43  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/PanelManager.java">Trac</a>, 
    44  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/PanelManager.java">SVN</a></dd></dl> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/PanelManager.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/PanelManager.java">SVN</a></dd></dl> 
    4545 */ 
    4646public class PanelManager extends LogicManager { 
  • trunk/projects/visbio/src/main/java/loci/visbio/SystemControls.java

    r6026 r7668  
    5454 * 
    5555 * <dl><dt><b>Source code:</b></dt> 
    56  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/SystemControls.java">Trac</a>, 
    57  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/SystemControls.java">SVN</a></dd></dl> 
     56 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/SystemControls.java">Trac</a>, 
     57 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/SystemControls.java">SVN</a></dd></dl> 
    5858 */ 
    5959public class SystemControls extends ControlPanel implements ActionListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/SystemManager.java

    r6026 r7668  
    4949 * 
    5050 * <dl><dt><b>Source code:</b></dt> 
    51  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/SystemManager.java">Trac</a>, 
    52  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/SystemManager.java">SVN</a></dd></dl> 
     51 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/SystemManager.java">Trac</a>, 
     52 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/SystemManager.java">SVN</a></dd></dl> 
    5353 */ 
    5454public class SystemManager extends LogicManager 
  • trunk/projects/visbio/src/main/java/loci/visbio/TaskControls.java

    r5093 r7668  
    3636 * 
    3737 * <dl><dt><b>Source code:</b></dt> 
    38  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/TaskControls.java">Trac</a>, 
    39  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/TaskControls.java">SVN</a></dd></dl> 
     38 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/TaskControls.java">Trac</a>, 
     39 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/TaskControls.java">SVN</a></dd></dl> 
    4040 */ 
    4141public class TaskControls extends ControlPanel { 
  • trunk/projects/visbio/src/main/java/loci/visbio/TaskManager.java

    r4953 r7668  
    3030 * 
    3131 * <dl><dt><b>Source code:</b></dt> 
    32  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/TaskManager.java">Trac</a>, 
    33  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/TaskManager.java">SVN</a></dd></dl> 
     32 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/TaskManager.java">Trac</a>, 
     33 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/TaskManager.java">SVN</a></dd></dl> 
    3434 */ 
    3535public class TaskManager extends LogicManager { 
  • trunk/projects/visbio/src/main/java/loci/visbio/VisBio.java

    r5093 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/VisBio.java">Trac</a>, 
    45  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/VisBio.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/VisBio.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/VisBio.java">SVN</a></dd></dl> 
    4646 */ 
    4747public final class VisBio extends Thread { 
  • trunk/projects/visbio/src/main/java/loci/visbio/VisBioEvent.java

    r4953 r7668  
    3030 * 
    3131 * <dl><dt><b>Source code:</b></dt> 
    32  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/VisBioEvent.java">Trac</a>, 
    33  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/VisBioEvent.java">SVN</a></dd></dl> 
     32 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/VisBioEvent.java">Trac</a>, 
     33 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/VisBioEvent.java">SVN</a></dd></dl> 
    3434 */ 
    3535public class VisBioEvent extends EventObject { 
  • trunk/projects/visbio/src/main/java/loci/visbio/VisBioFrame.java

    r6026 r7668  
    6767 * 
    6868 * <dl><dt><b>Source code:</b></dt> 
    69  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/VisBioFrame.java">Trac</a>, 
    70  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/VisBioFrame.java">SVN</a></dd></dl> 
     69 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/VisBioFrame.java">Trac</a>, 
     70 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/VisBioFrame.java">SVN</a></dd></dl> 
    7171 */ 
    7272public class VisBioFrame extends GUIFrame implements Runnable, SpawnListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/WindowInfo.java

    r5093 r7668  
    3737 * 
    3838 * <dl><dt><b>Source code:</b></dt> 
    39  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/WindowInfo.java">Trac</a>, 
    40  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/WindowInfo.java">SVN</a></dd></dl> 
     39 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/WindowInfo.java">Trac</a>, 
     40 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/WindowInfo.java">SVN</a></dd></dl> 
    4141 */ 
    4242public class WindowInfo implements WindowListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/WindowManager.java

    r5093 r7668  
    5050 * 
    5151 * <dl><dt><b>Source code:</b></dt> 
    52  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/WindowManager.java">Trac</a>, 
    53  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/WindowManager.java">SVN</a></dd></dl> 
     52 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/WindowManager.java">Trac</a>, 
     53 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/WindowManager.java">SVN</a></dd></dl> 
    5454 */ 
    5555public class WindowManager extends LogicManager implements WindowListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/WindowState.java

    r5093 r7668  
    3232 * 
    3333 * <dl><dt><b>Source code:</b></dt> 
    34  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/WindowState.java">Trac</a>, 
    35  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/WindowState.java">SVN</a></dd></dl> 
     34 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/WindowState.java">Trac</a>, 
     35 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/WindowState.java">SVN</a></dd></dl> 
    3636 */ 
    3737public class WindowState { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/ArbitrarySlice.java

    r5093 r7668  
    5353 * 
    5454 * <dl><dt><b>Source code:</b></dt> 
    55  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/ArbitrarySlice.java">Trac</a>, 
    56  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/ArbitrarySlice.java">SVN</a></dd></dl> 
     55 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/ArbitrarySlice.java">Trac</a>, 
     56 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/ArbitrarySlice.java">SVN</a></dd></dl> 
    5757 */ 
    5858public class ArbitrarySlice extends DataTransform 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/CollapseTransform.java

    r5093 r7668  
    4949 * 
    5050 * <dl><dt><b>Source code:</b></dt> 
    51  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/CollapseTransform.java">Trac</a>, 
    52  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/CollapseTransform.java">SVN</a></dd></dl> 
     51 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/CollapseTransform.java">Trac</a>, 
     52 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/CollapseTransform.java">SVN</a></dd></dl> 
    5353 */ 
    5454public class CollapseTransform extends ImageTransform { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/CollapseWidget.java

    r5093 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/CollapseWidget.java">Trac</a>, 
    45  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/CollapseWidget.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/CollapseWidget.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/CollapseWidget.java">SVN</a></dd></dl> 
    4646 */ 
    4747public class CollapseWidget extends JPanel implements ActionListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/DataCache.java

    r5093 r7668  
    3333 * 
    3434 * <dl><dt><b>Source code:</b></dt> 
    35  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/DataCache.java">Trac</a>, 
    36  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/DataCache.java">SVN</a></dd></dl> 
     35 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/DataCache.java">Trac</a>, 
     36 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/DataCache.java">SVN</a></dd></dl> 
    3737 */ 
    3838public class DataCache { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/DataControls.java

    r6026 r7668  
    7272 * 
    7373 * <dl><dt><b>Source code:</b></dt> 
    74  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/DataControls.java">Trac</a>, 
    75  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/DataControls.java">SVN</a></dd></dl> 
     74 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/DataControls.java">Trac</a>, 
     75 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/DataControls.java">SVN</a></dd></dl> 
    7676 */ 
    7777public class DataControls extends ControlPanel 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/DataManager.java

    r6472 r7668  
    5959 * 
    6060 * <dl><dt><b>Source code:</b></dt> 
    61  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/DataManager.java">Trac</a>, 
    62  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/DataManager.java">SVN</a></dd></dl> 
     61 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/DataManager.java">Trac</a>, 
     62 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/DataManager.java">SVN</a></dd></dl> 
    6363 */ 
    6464public class DataManager extends LogicManager { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/DataSampling.java

    r5191 r7668  
    4343 * 
    4444 * <dl><dt><b>Source code:</b></dt> 
    45  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/DataSampling.java">Trac</a>, 
    46  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/DataSampling.java">SVN</a></dd></dl> 
     45 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/DataSampling.java">Trac</a>, 
     46 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/DataSampling.java">SVN</a></dd></dl> 
    4747 */ 
    4848public class DataSampling extends ImageTransform { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/DataTransform.java

    r5093 r7668  
    4747 * 
    4848 * <dl><dt><b>Source code:</b></dt> 
    49  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/DataTransform.java">Trac</a>, 
    50  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/DataTransform.java">SVN</a></dd></dl> 
     49 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/DataTransform.java">Trac</a>, 
     50 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/DataTransform.java">SVN</a></dd></dl> 
    5151 */ 
    5252public abstract class DataTransform implements Dynamic, Saveable { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/Dataset.java

    r6472 r7668  
    9090 * 
    9191 * <dl><dt><b>Source code:</b></dt> 
    92  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/Dataset.java">Trac</a>, 
    93  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/Dataset.java">SVN</a></dd></dl> 
     92 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/Dataset.java">Trac</a>, 
     93 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/Dataset.java">SVN</a></dd></dl> 
    9494 */ 
    9595public class Dataset extends ImageTransform { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/DatasetWidget.java

    r5093 r7668  
    4747 * 
    4848 * <dl><dt><b>Source code:</b></dt> 
    49  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/DatasetWidget.java">Trac</a>, 
    50  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/DatasetWidget.java">SVN</a></dd></dl> 
     49 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/DatasetWidget.java">Trac</a>, 
     50 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/DatasetWidget.java">SVN</a></dd></dl> 
    5151 */ 
    5252public class DatasetWidget extends JPanel { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/ExportPane.java

    r6516 r7668  
    6363 * 
    6464 * <dl><dt><b>Source code:</b></dt> 
    65  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/ExportPane.java">Trac</a>, 
    66  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/ExportPane.java">SVN</a></dd></dl> 
     65 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/ExportPane.java">Trac</a>, 
     66 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/ExportPane.java">SVN</a></dd></dl> 
    6767 */ 
    6868public class ExportPane extends WizardPane { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/ImageTransform.java

    r5093 r7668  
    5252 * 
    5353 * <dl><dt><b>Source code:</b></dt> 
    54  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/ImageTransform.java">Trac</a>, 
    55  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/ImageTransform.java">SVN</a></dd></dl> 
     54 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/ImageTransform.java">Trac</a>, 
     55 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/ImageTransform.java">SVN</a></dd></dl> 
    5656 */ 
    5757public abstract class ImageTransform extends DataTransform { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/ProjectionTransform.java

    r5093 r7668  
    4646 * 
    4747 * <dl><dt><b>Source code:</b></dt> 
    48  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/ProjectionTransform.java">Trac</a>, 
    49  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/ProjectionTransform.java">SVN</a></dd></dl> 
     48 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/ProjectionTransform.java">Trac</a>, 
     49 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/ProjectionTransform.java">SVN</a></dd></dl> 
    5050 */ 
    5151public class ProjectionTransform extends ImageTransform { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/ProjectionWidget.java

    r5093 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/ProjectionWidget.java">Trac</a>, 
    45  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/ProjectionWidget.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/ProjectionWidget.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/ProjectionWidget.java">SVN</a></dd></dl> 
    4646 */ 
    4747public class ProjectionWidget extends JPanel implements ActionListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/SamplingThumbHandler.java

    r5093 r7668  
    3434 * 
    3535 * <dl><dt><b>Source code:</b></dt> 
    36  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/SamplingThumbHandler.java">Trac</a>, 
    37  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/SamplingThumbHandler.java">SVN</a></dd></dl> 
     36 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/SamplingThumbHandler.java">Trac</a>, 
     37 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/SamplingThumbHandler.java">SVN</a></dd></dl> 
    3838 */ 
    3939public class SamplingThumbHandler extends ThumbnailHandler { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/SamplingWidget.java

    r5093 r7668  
    4646 * 
    4747 * <dl><dt><b>Source code:</b></dt> 
    48  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/SamplingWidget.java">Trac</a>, 
    49  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/SamplingWidget.java">SVN</a></dd></dl> 
     48 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/SamplingWidget.java">Trac</a>, 
     49 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/SamplingWidget.java">SVN</a></dd></dl> 
    5050 */ 
    5151public class SamplingWidget extends JPanel implements ActionListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/SendToIJPane.java

    r5093 r7668  
    4747 * 
    4848 * <dl><dt><b>Source code:</b></dt> 
    49  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/SendToIJPane.java">Trac</a>, 
    50  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/SendToIJPane.java">SVN</a></dd></dl> 
     49 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/SendToIJPane.java">Trac</a>, 
     50 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/SendToIJPane.java">SVN</a></dd></dl> 
    5151 */ 
    5252public class SendToIJPane extends DialogPane { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/SliceWidget.java

    r5093 r7668  
    4646 * 
    4747 * <dl><dt><b>Source code:</b></dt> 
    48  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/SliceWidget.java">Trac</a>, 
    49  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/SliceWidget.java">SVN</a></dd></dl> 
     48 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/SliceWidget.java">Trac</a>, 
     49 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/SliceWidget.java">SVN</a></dd></dl> 
    5050 */ 
    5151public class SliceWidget extends JPanel 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/SpectralTransform.java

    r5093 r7668  
    4949 * 
    5050 * <dl><dt><b>Source code:</b></dt> 
    51  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/SpectralTransform.java">Trac</a>, 
    52  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/SpectralTransform.java">SVN</a></dd></dl> 
     51 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/SpectralTransform.java">Trac</a>, 
     52 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/SpectralTransform.java">SVN</a></dd></dl> 
    5353 */ 
    5454public class SpectralTransform extends ImageTransform 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/SpectralWidget.java

    r5093 r7668  
    4949 * 
    5050 * <dl><dt><b>Source code:</b></dt> 
    51  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/SpectralWidget.java">Trac</a>, 
    52  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/SpectralWidget.java">SVN</a></dd></dl> 
     51 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/SpectralWidget.java">Trac</a>, 
     52 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/SpectralWidget.java">SVN</a></dd></dl> 
    5353 */ 
    5454public class SpectralWidget extends JPanel implements ActionListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/ThumbnailCache.java

    r5093 r7668  
    4646 * 
    4747 * <dl><dt><b>Source code:</b></dt> 
    48  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/ThumbnailCache.java">Trac</a>, 
    49  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/ThumbnailCache.java">SVN</a></dd></dl> 
     48 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/ThumbnailCache.java">Trac</a>, 
     49 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/ThumbnailCache.java">SVN</a></dd></dl> 
    5050 */ 
    5151public class ThumbnailCache { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/ThumbnailHandler.java

    r5093 r7668  
    4040 * 
    4141 * <dl><dt><b>Source code:</b></dt> 
    42  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/ThumbnailHandler.java">Trac</a>, 
    43  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/ThumbnailHandler.java">SVN</a></dd></dl> 
     42 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/ThumbnailHandler.java">Trac</a>, 
     43 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/ThumbnailHandler.java">SVN</a></dd></dl> 
    4444 */ 
    4545public class ThumbnailHandler implements Runnable, TransformListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/TransformEvent.java

    r4953 r7668  
    3131 * 
    3232 * <dl><dt><b>Source code:</b></dt> 
    33  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/TransformEvent.java">Trac</a>, 
    34  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/TransformEvent.java">SVN</a></dd></dl> 
     33 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/TransformEvent.java">Trac</a>, 
     34 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/TransformEvent.java">SVN</a></dd></dl> 
    3535 */ 
    3636public class TransformEvent extends EventObject { 
  • trunk/projects/visbio/src/main/java/loci/visbio/data/TransformListener.java

    r4953 r7668  
    2828 * 
    2929 * <dl><dt><b>Source code:</b></dt> 
    30  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/data/TransformListener.java">Trac</a>, 
    31  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/data/TransformListener.java">SVN</a></dd></dl> 
     30 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/data/TransformListener.java">Trac</a>, 
     31 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/data/TransformListener.java">SVN</a></dd></dl> 
    3232 */ 
    3333public interface TransformListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/ext/ExtManager.java

    r5093 r7668  
    3535 * 
    3636 * <dl><dt><b>Source code:</b></dt> 
    37  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ext/ExtManager.java">Trac</a>, 
    38  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ext/ExtManager.java">SVN</a></dd></dl> 
     37 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ext/ExtManager.java">Trac</a>, 
     38 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ext/ExtManager.java">SVN</a></dd></dl> 
    3939 */ 
    4040public class ExtManager extends LogicManager { 
  • trunk/projects/visbio/src/main/java/loci/visbio/ext/ExternalFunction.java

    r5093 r7668  
    4848 * 
    4949 * <dl><dt><b>Source code:</b></dt> 
    50  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ext/ExternalFunction.java">Trac</a>, 
    51  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ext/ExternalFunction.java">SVN</a></dd></dl> 
     50 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ext/ExternalFunction.java">Trac</a>, 
     51 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ext/ExternalFunction.java">SVN</a></dd></dl> 
    5252 */ 
    5353public abstract class ExternalFunction extends ImageTransform { 
  • trunk/projects/visbio/src/main/java/loci/visbio/ext/ExternalProgram.java

    r5093 r7668  
    4747 * 
    4848 * <dl><dt><b>Source code:</b></dt> 
    49  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ext/ExternalProgram.java">Trac</a>, 
    50  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ext/ExternalProgram.java">SVN</a></dd></dl> 
     49 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ext/ExternalProgram.java">Trac</a>, 
     50 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ext/ExternalProgram.java">SVN</a></dd></dl> 
    5151 */ 
    5252public class ExternalProgram extends ExternalFunction { 
  • trunk/projects/visbio/src/main/java/loci/visbio/ext/FunctionParam.java

    r4953 r7668  
    2828 * 
    2929 * <dl><dt><b>Source code:</b></dt> 
    30  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ext/FunctionParam.java">Trac</a>, 
    31  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ext/FunctionParam.java">SVN</a></dd></dl> 
     30 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ext/FunctionParam.java">Trac</a>, 
     31 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ext/FunctionParam.java">SVN</a></dd></dl> 
    3232 */ 
    3333public class FunctionParam { 
  • trunk/projects/visbio/src/main/java/loci/visbio/ext/FunctionWidget.java

    r5093 r7668  
    4444 * 
    4545 * <dl><dt><b>Source code:</b></dt> 
    46  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ext/FunctionWidget.java">Trac</a>, 
    47  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ext/FunctionWidget.java">SVN</a></dd></dl> 
     46 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ext/FunctionWidget.java">Trac</a>, 
     47 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ext/FunctionWidget.java">SVN</a></dd></dl> 
    4848 */ 
    4949public class FunctionWidget extends JPanel implements ActionListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/ext/MatlabFunction.java

    r5093 r7668  
    3535 * 
    3636 * <dl><dt><b>Source code:</b></dt> 
    37  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ext/MatlabFunction.java">Trac</a>, 
    38  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ext/MatlabFunction.java">SVN</a></dd></dl> 
     37 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ext/MatlabFunction.java">Trac</a>, 
     38 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ext/MatlabFunction.java">SVN</a></dd></dl> 
    3939 */ 
    4040public class MatlabFunction extends ExternalFunction { 
  • trunk/projects/visbio/src/main/java/loci/visbio/ext/MatlabUtil.java

    r6026 r7668  
    4444 * 
    4545 * <dl><dt><b>Source code:</b></dt> 
    46  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ext/MatlabUtil.java">Trac</a>, 
    47  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ext/MatlabUtil.java">SVN</a></dd></dl> 
     46 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ext/MatlabUtil.java">Trac</a>, 
     47 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ext/MatlabUtil.java">SVN</a></dd></dl> 
    4848 */ 
    4949public final class MatlabUtil { 
  • trunk/projects/visbio/src/main/java/loci/visbio/help/HelpManager.java

    r6026 r7668  
    5757 * 
    5858 * <dl><dt><b>Source code:</b></dt> 
    59  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/help/HelpManager.java">Trac</a>, 
    60  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/help/HelpManager.java">SVN</a></dd></dl> 
     59 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/help/HelpManager.java">Trac</a>, 
     60 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/help/HelpManager.java">SVN</a></dd></dl> 
    6161 */ 
    6262public class HelpManager extends LogicManager { 
  • trunk/projects/visbio/src/main/java/loci/visbio/help/HelpTopic.java

    r4953 r7668  
    3030 * 
    3131 * <dl><dt><b>Source code:</b></dt> 
    32  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/help/HelpTopic.java">Trac</a>, 
    33  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/help/HelpTopic.java">SVN</a></dd></dl> 
     32 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/help/HelpTopic.java">Trac</a>, 
     33 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/help/HelpTopic.java">SVN</a></dd></dl> 
    3434 */ 
    3535public class HelpTopic extends DefaultMutableTreeNode { 
  • trunk/projects/visbio/src/main/java/loci/visbio/help/HelpWindow.java

    r5093 r7668  
    5353 * 
    5454 * <dl><dt><b>Source code:</b></dt> 
    55  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/help/HelpWindow.java">Trac</a>, 
    56  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/help/HelpWindow.java">SVN</a></dd></dl> 
     55 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/help/HelpWindow.java">Trac</a>, 
     56 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/help/HelpWindow.java">SVN</a></dd></dl> 
    5757 */ 
    5858public class HelpWindow extends JFrame 
  • trunk/projects/visbio/src/main/java/loci/visbio/ome/ImageUploader.java

    r6516 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ome/ImageUploader.java">Trac</a>, 
    45  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ome/ImageUploader.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ome/ImageUploader.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ome/ImageUploader.java">SVN</a></dd></dl> 
    4646 */ 
    4747public class ImageUploader { 
  • trunk/projects/visbio/src/main/java/loci/visbio/ome/OMEImage.java

    r5191 r7668  
    6969 * 
    7070 * <dl><dt><b>Source code:</b></dt> 
    71  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ome/OMEImage.java">Trac</a>, 
    72  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ome/OMEImage.java">SVN</a></dd></dl> 
     71 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ome/OMEImage.java">Trac</a>, 
     72 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ome/OMEImage.java">SVN</a></dd></dl> 
    7373 */ 
    7474public class OMEImage extends ImageTransform { 
  • trunk/projects/visbio/src/main/java/loci/visbio/ome/OMELoginPane.java

    r5093 r7668  
    3838 * 
    3939 * <dl><dt><b>Source code:</b></dt> 
    40  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ome/OMELoginPane.java">Trac</a>, 
    41  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ome/OMELoginPane.java">SVN</a></dd></dl> 
     40 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ome/OMELoginPane.java">Trac</a>, 
     41 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ome/OMELoginPane.java">SVN</a></dd></dl> 
    4242 */ 
    4343public class OMELoginPane extends DialogPane { 
  • trunk/projects/visbio/src/main/java/loci/visbio/ome/OMEManager.java

    r6472 r7668  
    4545 * 
    4646 * <dl><dt><b>Source code:</b></dt> 
    47  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/ome/OMEManager.java">Trac</a>, 
    48  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/ome/OMEManager.java">SVN</a></dd></dl> 
     47 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/ome/OMEManager.java">Trac</a>, 
     48 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/ome/OMEManager.java">SVN</a></dd></dl> 
    4949 */ 
    5050public class OMEManager extends LogicManager { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/ArrowTool.java

    r4953 r7668  
    3131 * 
    3232 * <dl><dt><b>Source code:</b></dt> 
    33  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/ArrowTool.java">Trac</a>, 
    34  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/ArrowTool.java">SVN</a></dd></dl> 
     33 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/ArrowTool.java">Trac</a>, 
     34 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/ArrowTool.java">SVN</a></dd></dl> 
    3535 */ 
    3636public class ArrowTool extends OverlayTool { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/BoxTool.java

    r4953 r7668  
    3131 * 
    3232 * <dl><dt><b>Source code:</b></dt> 
    33  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/BoxTool.java">Trac</a>, 
    34  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/BoxTool.java">SVN</a></dd></dl> 
     33 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/BoxTool.java">Trac</a>, 
     34 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/BoxTool.java">SVN</a></dd></dl> 
    3535 */ 
    3636public class BoxTool extends OverlayTool { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/FreeformExtension.java

    r4953 r7668  
    4545 * 
    4646 * <dl><dt><b>Source code:</b></dt> 
    47  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/FreeformExtension.java">Trac</a>, 
    48  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/FreeformExtension.java">SVN</a></dd></dl> 
     47 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/FreeformExtension.java">Trac</a>, 
     48 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/FreeformExtension.java">SVN</a></dd></dl> 
    4949 */ 
    5050public class FreeformExtension { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/FreeformTool.java

    r5093 r7668  
    3737 * 
    3838 * <dl><dt><b>Source code:</b></dt> 
    39  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/FreeformTool.java">Trac</a>, 
    40  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/FreeformTool.java">SVN</a></dd></dl> 
     39 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/FreeformTool.java">Trac</a>, 
     40 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/FreeformTool.java">SVN</a></dd></dl> 
    4141 */ 
    4242public class FreeformTool extends OverlayTool { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/LineTool.java

    r4953 r7668  
    3131 * 
    3232 * <dl><dt><b>Source code:</b></dt> 
    33  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/LineTool.java">Trac</a>, 
    34  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/LineTool.java">SVN</a></dd></dl> 
     33 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/LineTool.java">Trac</a>, 
     34 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/LineTool.java">SVN</a></dd></dl> 
    3535 */ 
    3636public class LineTool extends OverlayTool { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/MarkerTool.java

    r4953 r7668  
    3131 * 
    3232 * <dl><dt><b>Source code:</b></dt> 
    33  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/MarkerTool.java">Trac</a>, 
    34  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/MarkerTool.java">SVN</a></dd></dl> 
     33 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/MarkerTool.java">Trac</a>, 
     34 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/MarkerTool.java">SVN</a></dd></dl> 
    3535 */ 
    3636public class MarkerTool extends OverlayTool { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OvalTool.java

    r4953 r7668  
    3131 * 
    3232 * <dl><dt><b>Source code:</b></dt> 
    33  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OvalTool.java">Trac</a>, 
    34  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OvalTool.java">SVN</a></dd></dl> 
     33 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OvalTool.java">Trac</a>, 
     34 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OvalTool.java">SVN</a></dd></dl> 
    3535 */ 
    3636public class OvalTool extends OverlayTool { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayArrow.java

    r5093 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayArrow.java">Trac</a>, 
    45  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayArrow.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayArrow.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayArrow.java">SVN</a></dd></dl> 
    4646 */ 
    4747public class OverlayArrow extends OverlayObject { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayBox.java

    r5093 r7668  
    4141 * 
    4242 * <dl><dt><b>Source code:</b></dt> 
    43  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayBox.java">Trac</a>, 
    44  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayBox.java">SVN</a></dd></dl> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayBox.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayBox.java">SVN</a></dd></dl> 
    4545 */ 
    4646public class OverlayBox extends OverlayObject { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayFreeform.java

    r4953 r7668  
    2828 * 
    2929 * <dl><dt><b>Source code:</b></dt> 
    30  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayFreeform.java">Trac</a>, 
    31  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayFreeform.java">SVN</a></dd></dl> 
     30 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayFreeform.java">Trac</a>, 
     31 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayFreeform.java">SVN</a></dd></dl> 
    3232 */ 
    3333 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayIO.java

    r5093 r7668  
    5757 * 
    5858 * <dl><dt><b>Source code:</b></dt> 
    59  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayIO.java">Trac</a>, 
    60  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayIO.java">SVN</a></dd></dl> 
     59 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayIO.java">Trac</a>, 
     60 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayIO.java">SVN</a></dd></dl> 
    6161 */ 
    6262public final class OverlayIO { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayLine.java

    r5093 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayLine.java">Trac</a>, 
    45  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayLine.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayLine.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayLine.java">SVN</a></dd></dl> 
    4646 */ 
    4747public class OverlayLine extends OverlayObject { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayManager.java

    r5093 r7668  
    3636 * 
    3737 * <dl><dt><b>Source code:</b></dt> 
    38  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayManager.java">Trac</a>, 
    39  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayManager.java">SVN</a></dd></dl> 
     38 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayManager.java">Trac</a>, 
     39 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayManager.java">SVN</a></dd></dl> 
    4040 */ 
    4141public class OverlayManager extends LogicManager { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayMarker.java

    r5093 r7668  
    4141 * 
    4242 * <dl><dt><b>Source code:</b></dt> 
    43  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayMarker.java">Trac</a>, 
    44  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayMarker.java">SVN</a></dd></dl> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayMarker.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayMarker.java">SVN</a></dd></dl> 
    4545 */ 
    4646public class OverlayMarker extends OverlayObject { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayNodedObject.java

    r5093 r7668  
    4545 * 
    4646 * <dl><dt><b>Source code:</b></dt> 
    47  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayNodedObject.java">Trac</a>, 
    48  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayNodedObject.java">SVN</a></dd></dl> 
     47 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayNodedObject.java">Trac</a>, 
     48 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayNodedObject.java">SVN</a></dd></dl> 
    4949 */ 
    5050 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayNumericStrategy.java

    r4953 r7668  
    2828 * 
    2929 * <dl><dt><b>Source code:</b></dt> 
    30  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayNumericStrategy.java">Trac</a>, 
    31  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayNumericStrategy.java">SVN</a></dd></dl> 
     30 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayNumericStrategy.java">Trac</a>, 
     31 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayNumericStrategy.java">SVN</a></dd></dl> 
    3232 */ 
    3333public final class OverlayNumericStrategy { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayObject.java

    r5093 r7668  
    3232 * 
    3333 * <dl><dt><b>Source code:</b></dt> 
    34  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayObject.java">Trac</a>, 
    35  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayObject.java">SVN</a></dd></dl> 
     34 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayObject.java">Trac</a>, 
     35 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayObject.java">SVN</a></dd></dl> 
    3636 */ 
    3737public abstract class OverlayObject { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayOval.java

    r5093 r7668  
    4141 * 
    4242 * <dl><dt><b>Source code:</b></dt> 
    43  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayOval.java">Trac</a>, 
    44  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayOval.java">SVN</a></dd></dl> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayOval.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayOval.java">SVN</a></dd></dl> 
    4545 */ 
    4646public class OverlayOval extends OverlayObject { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayPolyline.java

    r4953 r7668  
    2828 * 
    2929 * <dl><dt><b>Source code:</b></dt> 
    30  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayPolyline.java">Trac</a>, 
    31  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayPolyline.java">SVN</a></dd></dl> 
     30 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayPolyline.java">Trac</a>, 
     31 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayPolyline.java">SVN</a></dd></dl> 
    3232 */ 
    3333 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayText.java

    r5093 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayText.java">Trac</a>, 
    45  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayText.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayText.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayText.java">SVN</a></dd></dl> 
    4646 */ 
    4747public class OverlayText extends OverlayObject { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayTool.java

    r4953 r7668  
    3030 * 
    3131 * <dl><dt><b>Source code:</b></dt> 
    32  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayTool.java">Trac</a>, 
    33  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayTool.java">SVN</a></dd></dl> 
     32 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayTool.java">Trac</a>, 
     33 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayTool.java">SVN</a></dd></dl> 
    3434 */ 
    3535public class OverlayTool { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayTransform.java

    r5093 r7668  
    7575 * 
    7676 * <dl><dt><b>Source code:</b></dt> 
    77  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayTransform.java">Trac</a>, 
    78  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayTransform.java">SVN</a></dd></dl> 
     77 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayTransform.java">Trac</a>, 
     78 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayTransform.java">SVN</a></dd></dl> 
    7979 */ 
    8080public class OverlayTransform extends DataTransform 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayUtil.java

    r5093 r7668  
    4848 * 
    4949 * <dl><dt><b>Source code:</b></dt> 
    50  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayUtil.java">Trac</a>, 
    51  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayUtil.java">SVN</a></dd></dl> 
     50 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayUtil.java">Trac</a>, 
     51 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayUtil.java">SVN</a></dd></dl> 
    5252 */ 
    5353public final class OverlayUtil { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayWidget.java

    r5093 r7668  
    8888 * 
    8989 * <dl><dt><b>Source code:</b></dt> 
    90  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/OverlayWidget.java">Trac</a>, 
    91  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/OverlayWidget.java">SVN</a></dd></dl> 
     90 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayWidget.java">Trac</a>, 
     91 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayWidget.java">SVN</a></dd></dl> 
    9292 */ 
    9393public class OverlayWidget extends JPanel implements ActionListener, 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/PointerTool.java

    r5093 r7668  
    3636 * 
    3737 * <dl><dt><b>Source code:</b></dt> 
    38  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/PointerTool.java">Trac</a>, 
    39  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/PointerTool.java">SVN</a></dd></dl> 
     38 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/PointerTool.java">Trac</a>, 
     39 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/PointerTool.java">SVN</a></dd></dl> 
    4040 */ 
    4141public class PointerTool extends OverlayTool { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/PolylineTool.java

    r5093 r7668  
    3737 * 
    3838 * <dl><dt><b>Source code:</b></dt> 
    39  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/PolylineTool.java">Trac</a>, 
    40  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/PolylineTool.java">SVN</a></dd></dl> 
     39 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/PolylineTool.java">Trac</a>, 
     40 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/PolylineTool.java">SVN</a></dd></dl> 
    4141 */ 
    4242public class PolylineTool extends OverlayTool { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/SpreadsheetLaunchException.java

    r4953 r7668  
    2828 * 
    2929 * <dl><dt><b>Source code:</b></dt> 
    30  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/SpreadsheetLaunchException.java">Trac</a>, 
    31  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/SpreadsheetLaunchException.java">SVN</a></dd></dl> 
     30 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/SpreadsheetLaunchException.java">Trac</a>, 
     31 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/SpreadsheetLaunchException.java">SVN</a></dd></dl> 
    3232 */ 
    3333public class SpreadsheetLaunchException extends Exception{ 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/SpreadsheetLauncher.java

    r6026 r7668  
    3333 * 
    3434 * <dl><dt><b>Source code:</b></dt> 
    35  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/SpreadsheetLauncher.java">Trac</a>, 
    36  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/SpreadsheetLauncher.java">SVN</a></dd></dl> 
     35 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/SpreadsheetLauncher.java">Trac</a>, 
     36 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/SpreadsheetLauncher.java">SVN</a></dd></dl> 
    3737 */ 
    3838public class SpreadsheetLauncher { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/StatsOptionsPane.java

    r5093 r7668  
    4646 * 
    4747 * <dl><dt><b>Source code:</b></dt> 
    48  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/StatsOptionsPane.java">Trac</a>, 
    49  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/StatsOptionsPane.java">SVN</a></dd></dl> 
     48 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/StatsOptionsPane.java">Trac</a>, 
     49 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/StatsOptionsPane.java">SVN</a></dd></dl> 
    5050 */ 
    5151public class StatsOptionsPane extends JPanel implements ActionListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/TextTool.java

    r4953 r7668  
    3131 * 
    3232 * <dl><dt><b>Source code:</b></dt> 
    33  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/TextTool.java">Trac</a>, 
    34  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/TextTool.java">SVN</a></dd></dl> 
     33 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/TextTool.java">Trac</a>, 
     34 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/TextTool.java">SVN</a></dd></dl> 
    3535 */ 
    3636public class TextTool extends OverlayTool { 
  • trunk/projects/visbio/src/main/java/loci/visbio/overlays/TransientSelectBox.java

    r5093 r7668  
    4646 * 
    4747 * <dl><dt><b>Source code:</b></dt> 
    48  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/overlays/TransientSelectBox.java">Trac</a>, 
    49  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/overlays/TransientSelectBox.java">SVN</a></dd></dl> 
     48 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/overlays/TransientSelectBox.java">Trac</a>, 
     49 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/overlays/TransientSelectBox.java">SVN</a></dd></dl> 
    5050 */ 
    5151public class TransientSelectBox { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/BioOption.java

    r5093 r7668  
    3232 * 
    3333 * <dl><dt><b>Source code:</b></dt> 
    34  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/BioOption.java">Trac</a>, 
    35  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/BioOption.java">SVN</a></dd></dl> 
     34 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/BioOption.java">Trac</a>, 
     35 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/BioOption.java">SVN</a></dd></dl> 
    3636 */ 
    3737public abstract class BioOption implements Saveable { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/BooleanOption.java

    r5093 r7668  
    3737 * 
    3838 * <dl><dt><b>Source code:</b></dt> 
    39  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/BooleanOption.java">Trac</a>, 
    40  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/BooleanOption.java">SVN</a></dd></dl> 
     39 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/BooleanOption.java">Trac</a>, 
     40 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/BooleanOption.java">SVN</a></dd></dl> 
    4141 */ 
    4242public class BooleanOption extends BioOption { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/CustomOption.java

    r4953 r7668  
    3030 * 
    3131 * <dl><dt><b>Source code:</b></dt> 
    32  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/CustomOption.java">Trac</a>, 
    33  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/CustomOption.java">SVN</a></dd></dl> 
     32 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/CustomOption.java">Trac</a>, 
     33 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/CustomOption.java">SVN</a></dd></dl> 
    3434 */ 
    3535public class CustomOption extends BioOption { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/Dynamic.java

    r4953 r7668  
    5252 * 
    5353 * <dl><dt><b>Source code:</b></dt> 
    54  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/Dynamic.java">Trac</a>, 
    55  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/Dynamic.java">SVN</a></dd></dl> 
     54 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/Dynamic.java">Trac</a>, 
     55 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/Dynamic.java">SVN</a></dd></dl> 
    5656 */ 
    5757public interface Dynamic { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/ListOption.java

    r5093 r7668  
    3838 * 
    3939 * <dl><dt><b>Source code:</b></dt> 
    40  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/ListOption.java">Trac</a>, 
    41  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/ListOption.java">SVN</a></dd></dl> 
     40 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/ListOption.java">Trac</a>, 
     41 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/ListOption.java">SVN</a></dd></dl> 
    4242 */ 
    4343public class ListOption extends BioOption { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/NumericOption.java

    r5093 r7668  
    3838 * 
    3939 * <dl><dt><b>Source code:</b></dt> 
    40  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/NumericOption.java">Trac</a>, 
    41  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/NumericOption.java">SVN</a></dd></dl> 
     40 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/NumericOption.java">Trac</a>, 
     41 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/NumericOption.java">SVN</a></dd></dl> 
    4242 */ 
    4343public class NumericOption extends BioOption { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/OptionManager.java

    r6026 r7668  
    4949 * 
    5050 * <dl><dt><b>Source code:</b></dt> 
    51  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/OptionManager.java">Trac</a>, 
    52  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/OptionManager.java">SVN</a></dd></dl> 
     51 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/OptionManager.java">Trac</a>, 
     52 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/OptionManager.java">SVN</a></dd></dl> 
    5353 */ 
    5454public class OptionManager extends LogicManager { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/OptionPane.java

    r5093 r7668  
    3838 * 
    3939 * <dl><dt><b>Source code:</b></dt> 
    40  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/OptionPane.java">Trac</a>, 
    41  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/OptionPane.java">SVN</a></dd></dl> 
     40 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/OptionPane.java">Trac</a>, 
     41 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/OptionPane.java">SVN</a></dd></dl> 
    4242 */ 
    4343public class OptionPane extends DialogPane { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/ProgramState.java

    r4953 r7668  
    2929 * 
    3030 * <dl><dt><b>Source code:</b></dt> 
    31  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/ProgramState.java">Trac</a>, 
    32  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/ProgramState.java">SVN</a></dd></dl> 
     31 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/ProgramState.java">Trac</a>, 
     32 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/ProgramState.java">SVN</a></dd></dl> 
    3333 */ 
    3434public class ProgramState { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/ResolutionOption.java

    r5093 r7668  
    4040 * 
    4141 * <dl><dt><b>Source code:</b></dt> 
    42  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/ResolutionOption.java">Trac</a>, 
    43  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/ResolutionOption.java">SVN</a></dd></dl> 
     42 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/ResolutionOption.java">Trac</a>, 
     43 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/ResolutionOption.java">SVN</a></dd></dl> 
    4444 */ 
    4545public class ResolutionOption extends BioOption { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/ResolutionToggleOption.java

    r5093 r7668  
    4444 * 
    4545 * <dl><dt><b>Source code:</b></dt> 
    46  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/ResolutionToggleOption.java">Trac</a>, 
    47  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/ResolutionToggleOption.java">SVN</a></dd></dl> 
     46 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/ResolutionToggleOption.java">Trac</a>, 
     47 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/ResolutionToggleOption.java">SVN</a></dd></dl> 
    4848 */ 
    4949public class ResolutionToggleOption extends BioOption 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/SaveException.java

    r4953 r7668  
    2828 * 
    2929 * <dl><dt><b>Source code:</b></dt> 
    30  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/SaveException.java">Trac</a>, 
    31  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/SaveException.java">SVN</a></dd></dl> 
     30 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/SaveException.java">Trac</a>, 
     31 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/SaveException.java">SVN</a></dd></dl> 
    3232 */ 
    3333public class SaveException extends Exception { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/Saveable.java

    r4953 r7668  
    3131 * 
    3232 * <dl><dt><b>Source code:</b></dt> 
    33  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/Saveable.java">Trac</a>, 
    34  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/Saveable.java">SVN</a></dd></dl> 
     33 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/Saveable.java">Trac</a>, 
     34 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/Saveable.java">SVN</a></dd></dl> 
    3535 */ 
    3636public interface Saveable { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/SpreadsheetLaunchOption.java

    r5093 r7668  
    4848 * 
    4949 * <dl><dt><b>Source code:</b></dt> 
    50  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/SpreadsheetLaunchOption.java">Trac</a>, 
    51  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/SpreadsheetLaunchOption.java">SVN</a></dd></dl> 
     50 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/SpreadsheetLaunchOption.java">Trac</a>, 
     51 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/SpreadsheetLaunchOption.java">SVN</a></dd></dl> 
    5252 */ 
    5353public class SpreadsheetLaunchOption extends BioOption 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/SpreadsheetOptionStrategy.java

    r4953 r7668  
    2828 * 
    2929 * <dl><dt><b>Source code:</b></dt> 
    30  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/SpreadsheetOptionStrategy.java">Trac</a>, 
    31  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/SpreadsheetOptionStrategy.java">SVN</a></dd></dl> 
     30 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/SpreadsheetOptionStrategy.java">Trac</a>, 
     31 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/SpreadsheetOptionStrategy.java">SVN</a></dd></dl> 
    3232 */ 
    3333public final class SpreadsheetOptionStrategy { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/StateManager.java

    r5093 r7668  
    5050 * 
    5151 * <dl><dt><b>Source code:</b></dt> 
    52  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/StateManager.java">Trac</a>, 
    53  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/StateManager.java">SVN</a></dd></dl> 
     52 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/StateManager.java">Trac</a>, 
     53 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/StateManager.java">SVN</a></dd></dl> 
    5454 */ 
    5555public class StateManager extends LogicManager { 
  • trunk/projects/visbio/src/main/java/loci/visbio/state/StringOption.java

    r5093 r7668  
    4141 * 
    4242 * <dl><dt><b>Source code:</b></dt> 
    43  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/state/StringOption.java">Trac</a>, 
    44  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/state/StringOption.java">SVN</a></dd></dl> 
     43 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/state/StringOption.java">Trac</a>, 
     44 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/state/StringOption.java">SVN</a></dd></dl> 
    4545 */ 
    4646public class StringOption extends BioOption { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/BioArrowButton.java

    r5093 r7668  
    3232 * 
    3333 * <dl><dt><b>Source code:</b></dt> 
    34  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/BioArrowButton.java">Trac</a>, 
    35  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/BioArrowButton.java">SVN</a></dd></dl> 
     34 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/BioArrowButton.java">Trac</a>, 
     35 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/BioArrowButton.java">SVN</a></dd></dl> 
    3636 */ 
    3737public class BioArrowButton extends BasicArrowButton { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/BioComboBox.java

    r5093 r7668  
    3434 * 
    3535 * <dl><dt><b>Source code:</b></dt> 
    36  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/BioComboBox.java">Trac</a>, 
    37  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/BioComboBox.java">SVN</a></dd></dl> 
     36 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/BioComboBox.java">Trac</a>, 
     37 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/BioComboBox.java">SVN</a></dd></dl> 
    3838 */ 
    3939public class BioComboBox extends JComboBox { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/BreakawayPanel.java

    r5093 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/BreakawayPanel.java">Trac</a>, 
    45  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/BreakawayPanel.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/BreakawayPanel.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/BreakawayPanel.java">SVN</a></dd></dl> 
    4646 */ 
    4747public class BreakawayPanel extends JPanel implements ActionListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/BrowserLauncher.java

    r5093 r7668  
    8585 * 
    8686 * <dl><dt><b>Source code:</b></dt> 
    87  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/BrowserLauncher.java">Trac</a>, 
    88  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/BrowserLauncher.java">SVN</a></dd></dl> 
     87 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/BrowserLauncher.java">Trac</a>, 
     88 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/BrowserLauncher.java">SVN</a></dd></dl> 
    8989 * 
    9090 * @author Eric Albert ejalbert at cs.stanford.edu 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/ColorUtil.java

    r5093 r7668  
    4747 * 
    4848 * <dl><dt><b>Source code:</b></dt> 
    49  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/ColorUtil.java">Trac</a>, 
    50  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/ColorUtil.java">SVN</a></dd></dl> 
     49 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/ColorUtil.java">Trac</a>, 
     50 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/ColorUtil.java">SVN</a></dd></dl> 
    5151 */ 
    5252public final class ColorUtil { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/DataUtil.java

    r5093 r7668  
    5858 * 
    5959 * <dl><dt><b>Source code:</b></dt> 
    60  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/DataUtil.java">Trac</a>, 
    61  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/DataUtil.java">SVN</a></dd></dl> 
     60 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/DataUtil.java">Trac</a>, 
     61 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/DataUtil.java">SVN</a></dd></dl> 
    6262 */ 
    6363public final class DataUtil { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/DialogPane.java

    r5093 r7668  
    4646 * 
    4747 * <dl><dt><b>Source code:</b></dt> 
    48  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/DialogPane.java">Trac</a>, 
    49  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/DialogPane.java">SVN</a></dd></dl> 
     48 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/DialogPane.java">Trac</a>, 
     49 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/DialogPane.java">SVN</a></dd></dl> 
    5050 */ 
    5151public class DialogPane extends JPanel implements ActionListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/DisplayUtil.java

    r5093 r7668  
    5151 * 
    5252 * <dl><dt><b>Source code:</b></dt> 
    53  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/DisplayUtil.java">Trac</a>, 
    54  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/DisplayUtil.java">SVN</a></dd></dl> 
     53 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/DisplayUtil.java">Trac</a>, 
     54 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/DisplayUtil.java">SVN</a></dd></dl> 
    5555 */ 
    5656public final class DisplayUtil { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/Docker.java

    r5093 r7668  
    4747 * 
    4848 * <dl><dt><b>Source code:</b></dt> 
    49  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/Docker.java">Trac</a>, 
    50  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/Docker.java">SVN</a></dd></dl> 
     49 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/Docker.java">Trac</a>, 
     50 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/Docker.java">SVN</a></dd></dl> 
    5151 */ 
    5252public class Docker implements ComponentListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/FontChooserPane.java

    r6026 r7668  
    4848 * 
    4949 * <dl><dt><b>Source code:</b></dt> 
    50  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/FontChooserPane.java">Trac</a>, 
    51  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/FontChooserPane.java">SVN</a></dd></dl> 
     50 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/FontChooserPane.java">Trac</a>, 
     51 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/FontChooserPane.java">SVN</a></dd></dl> 
    5252 */ 
    5353public class FontChooserPane extends DialogPane implements ChangeListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/FormsUtil.java

    r5093 r7668  
    3737 * 
    3838 * <dl><dt><b>Source code:</b></dt> 
    39  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/FormsUtil.java">Trac</a>, 
    40  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/FormsUtil.java">SVN</a></dd></dl> 
     39 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/FormsUtil.java">Trac</a>, 
     40 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/FormsUtil.java">SVN</a></dd></dl> 
    4141 */ 
    4242public final class FormsUtil { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/ImageJUtil.java

    r5093 r7668  
    5151 * 
    5252 * <dl><dt><b>Source code:</b></dt> 
    53  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/ImageJUtil.java">Trac</a>, 
    54  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/ImageJUtil.java">SVN</a></dd></dl> 
     53 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/ImageJUtil.java">Trac</a>, 
     54 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/ImageJUtil.java">SVN</a></dd></dl> 
    5555 */ 
    5656public final class ImageJUtil { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/InstanceServer.java

    r5093 r7668  
    4646 * 
    4747 * <dl><dt><b>Source code:</b></dt> 
    48  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/InstanceServer.java">Trac</a>, 
    49  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/InstanceServer.java">SVN</a></dd></dl> 
     48 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/InstanceServer.java">Trac</a>, 
     49 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/InstanceServer.java">SVN</a></dd></dl> 
    5050 */ 
    5151public class InstanceServer implements Runnable { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/LAFUtil.java

    r6026 r7668  
    3737 * 
    3838 * <dl><dt><b>Source code:</b></dt> 
    39  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/LAFUtil.java">Trac</a>, 
    40  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/LAFUtil.java">SVN</a></dd></dl> 
     39 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/LAFUtil.java">Trac</a>, 
     40 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/LAFUtil.java">SVN</a></dd></dl> 
    4141 */ 
    4242public final class LAFUtil { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/MathUtil.java

    r4953 r7668  
    3030 * 
    3131 * <dl><dt><b>Source code:</b></dt> 
    32  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/MathUtil.java">Trac</a>, 
    33  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/MathUtil.java">SVN</a></dd></dl> 
     32 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/MathUtil.java">Trac</a>, 
     33 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/MathUtil.java">SVN</a></dd></dl> 
    3434 */ 
    3535public final class MathUtil { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/MessagePane.java

    r5093 r7668  
    3636 * 
    3737 * <dl><dt><b>Source code:</b></dt> 
    38  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/MessagePane.java">Trac</a>, 
    39  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/MessagePane.java">SVN</a></dd></dl> 
     38 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/MessagePane.java">Trac</a>, 
     39 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/MessagePane.java">SVN</a></dd></dl> 
    4040 */ 
    4141public class MessagePane extends DialogPane { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/ObjectUtil.java

    r4953 r7668  
    3232 * 
    3333 * <dl><dt><b>Source code:</b></dt> 
    34  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/ObjectUtil.java">Trac</a>, 
    35  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/ObjectUtil.java">SVN</a></dd></dl> 
     34 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/ObjectUtil.java">Trac</a>, 
     35 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/ObjectUtil.java">SVN</a></dd></dl> 
    3636 */ 
    3737public final class ObjectUtil { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/OutputConsole.java

    r5093 r7668  
    4646 * 
    4747 * <dl><dt><b>Source code:</b></dt> 
    48  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/OutputConsole.java">Trac</a>, 
    49  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/OutputConsole.java">SVN</a></dd></dl> 
     48 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/OutputConsole.java">Trac</a>, 
     49 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/OutputConsole.java">SVN</a></dd></dl> 
    5050 */ 
    5151public class OutputConsole extends OutputStream { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/OutputEvent.java

    r4953 r7668  
    3030 * 
    3131 * <dl><dt><b>Source code:</b></dt> 
    32  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/OutputEvent.java">Trac</a>, 
    33  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/OutputEvent.java">SVN</a></dd></dl> 
     32 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/OutputEvent.java">Trac</a>, 
     33 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/OutputEvent.java">SVN</a></dd></dl> 
    3434 */ 
    3535public class OutputEvent extends AWTEvent { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/OutputListener.java

    r4953 r7668  
    2828 * 
    2929 * <dl><dt><b>Source code:</b></dt> 
    30  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/OutputListener.java">Trac</a>, 
    31  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/OutputListener.java">SVN</a></dd></dl> 
     30 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/OutputListener.java">Trac</a>, 
     31 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/OutputListener.java">SVN</a></dd></dl> 
    3232 */ 
    3333public interface OutputListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/Segment2D.java

    r4953 r7668  
    3030 * 
    3131 * <dl><dt><b>Source code:</b></dt> 
    32  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/Segment2D.java">Trac</a>, 
    33  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/Segment2D.java">SVN</a></dd></dl> 
     32 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/Segment2D.java">Trac</a>, 
     33 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/Segment2D.java">SVN</a></dd></dl> 
    3434 */ 
    3535public class Segment2D { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/SpawnEvent.java

    r4953 r7668  
    2828 * 
    2929 * <dl><dt><b>Source code:</b></dt> 
    30  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/SpawnEvent.java">Trac</a>, 
    31  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/SpawnEvent.java">SVN</a></dd></dl> 
     30 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/SpawnEvent.java">Trac</a>, 
     31 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/SpawnEvent.java">SVN</a></dd></dl> 
    3232 */ 
    3333public class SpawnEvent { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/SpawnListener.java

    r4953 r7668  
    2828 * 
    2929 * <dl><dt><b>Source code:</b></dt> 
    30  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/SpawnListener.java">Trac</a>, 
    31  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/SpawnListener.java">SVN</a></dd></dl> 
     30 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/SpawnListener.java">Trac</a>, 
     31 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/SpawnListener.java">SVN</a></dd></dl> 
    3232 */ 
    3333public interface SpawnListener { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/SplashScreen.java

    r5093 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/SplashScreen.java">Trac</a>, 
    45  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/SplashScreen.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/SplashScreen.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/SplashScreen.java">SVN</a></dd></dl> 
    4646 */ 
    4747public class SplashScreen extends JWindow { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/SwingUtil.java

    r6026 r7668  
    6666 * 
    6767 * <dl><dt><b>Source code:</b></dt> 
    68  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/SwingUtil.java">Trac</a>, 
    69  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/SwingUtil.java">SVN</a></dd></dl> 
     68 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/SwingUtil.java">Trac</a>, 
     69 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/SwingUtil.java">SVN</a></dd></dl> 
    7070 */ 
    7171public final class SwingUtil { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/WarningPane.java

    r5093 r7668  
    3636 * 
    3737 * <dl><dt><b>Source code:</b></dt> 
    38  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/WarningPane.java">Trac</a>, 
    39  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/WarningPane.java">SVN</a></dd></dl> 
     38 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/WarningPane.java">Trac</a>, 
     39 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/WarningPane.java">SVN</a></dd></dl> 
    4040 */ 
    4141public class WarningPane extends MessagePane { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/WizardPane.java

    r5093 r7668  
    3939 * 
    4040 * <dl><dt><b>Source code:</b></dt> 
    41  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/WizardPane.java">Trac</a>, 
    42  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/WizardPane.java">SVN</a></dd></dl> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/WizardPane.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/WizardPane.java">SVN</a></dd></dl> 
    4343 */ 
    4444public class WizardPane extends DialogPane { 
  • trunk/projects/visbio/src/main/java/loci/visbio/util/XMLUtil.java

    r7666 r7668  
    5757 * 
    5858 * <dl><dt><b>Source code:</b></dt> 
    59  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/util/XMLUtil.java">Trac</a>, 
    60  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/util/XMLUtil.java">SVN</a></dd></dl> 
     59 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/util/XMLUtil.java">Trac</a>, 
     60 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/util/XMLUtil.java">SVN</a></dd></dl> 
    6161 */ 
    6262public final class XMLUtil { 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/BioColorWidget.java

    r5093 r7668  
    4242 * 
    4343 * <dl><dt><b>Source code:</b></dt> 
    44  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/BioColorWidget.java">Trac</a>, 
    45  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/BioColorWidget.java">SVN</a></dd></dl> 
     44 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/BioColorWidget.java">Trac</a>, 
     45 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/BioColorWidget.java">SVN</a></dd></dl> 
    4646 */ 
    4747public class BioColorWidget extends JPanel { 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/BioSlideWidget.java

    r5093 r7668  
    4949 * 
    5050 * <dl><dt><b>Source code:</b></dt> 
    51  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/BioSlideWidget.java">Trac</a>, 
    52  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/BioSlideWidget.java">SVN</a></dd></dl> 
     51 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/BioSlideWidget.java">Trac</a>, 
     52 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/BioSlideWidget.java">SVN</a></dd></dl> 
    5353 */ 
    5454public class BioSlideWidget extends JPanel 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/CaptureHandler.java

    r6516 r7668  
    5555 * 
    5656 * <dl><dt><b>Source code:</b></dt> 
    57  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/CaptureHandler.java">Trac</a>, 
    58  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/CaptureHandler.java">SVN</a></dd></dl> 
     57 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/CaptureHandler.java">Trac</a>, 
     58 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/CaptureHandler.java">SVN</a></dd></dl> 
    5959 */ 
    6060public class CaptureHandler implements Saveable { 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/CapturePanel.java

    r5093 r7668  
    7070 * 
    7171 * <dl><dt><b>Source code:</b></dt> 
    72  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/CapturePanel.java">Trac</a>, 
    73  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/CapturePanel.java">SVN</a></dd></dl> 
     72 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/CapturePanel.java">Trac</a>, 
     73 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/CapturePanel.java">SVN</a></dd></dl> 
    7474 */ 
    7575public class CapturePanel extends JPanel implements ActionListener, 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/ColorHandler.java

    r5093 r7668  
    5353 * 
    5454 * <dl><dt><b>Source code:</b></dt> 
    55  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/ColorHandler.java">Trac</a>, 
    56  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/ColorHandler.java">SVN</a></dd></dl> 
     55 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/ColorHandler.java">Trac</a>, 
     56 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/ColorHandler.java">SVN</a></dd></dl> 
    5757 */ 
    5858public class ColorHandler { 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/ColorPane.java

    r5093 r7668  
    8383 * 
    8484 * <dl><dt><b>Source code:</b></dt> 
    85  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/ColorPane.java">Trac</a>, 
    86  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/ColorPane.java">SVN</a></dd></dl> 
     85 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/ColorPane.java">Trac</a>, 
     86 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/ColorPane.java">SVN</a></dd></dl> 
    8787 */ 
    8888public class ColorPane extends DialogPane 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayControls.java

    r5093 r7668  
    5252 * 
    5353 * <dl><dt><b>Source code:</b></dt> 
    54  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/DisplayControls.java">Trac</a>, 
    55  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/DisplayControls.java">SVN</a></dd></dl> 
     54 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayControls.java">Trac</a>, 
     55 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayControls.java">SVN</a></dd></dl> 
    5656 */ 
    5757public class DisplayControls extends ControlPanel 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayManager.java

    r6026 r7668  
    5050 * 
    5151 * <dl><dt><b>Source code:</b></dt> 
    52  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/DisplayManager.java">Trac</a>, 
    53  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/DisplayManager.java">SVN</a></dd></dl> 
     52 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayManager.java">Trac</a>, 
     53 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayManager.java">SVN</a></dd></dl> 
    5454 */ 
    5555public class DisplayManager extends LogicManager { 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayPosition.java

    r5093 r7668  
    3636 * 
    3737 * <dl><dt><b>Source code:</b></dt> 
    38  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/DisplayPosition.java">Trac</a>, 
    39  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/DisplayPosition.java">SVN</a></dd></dl> 
     38 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayPosition.java">Trac</a>, 
     39 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayPosition.java">SVN</a></dd></dl> 
    4040 */ 
    4141public class DisplayPosition implements Dynamic, Saveable { 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayWindow.java

    r6026 r7668  
    7272 * 
    7373 * <dl><dt><b>Source code:</b></dt> 
    74  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/DisplayWindow.java">Trac</a>, 
    75  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/DisplayWindow.java">SVN</a></dd></dl> 
     74 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayWindow.java">Trac</a>, 
     75 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayWindow.java">SVN</a></dd></dl> 
    7676 */ 
    7777public class DisplayWindow extends JFrame 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/SliceToggler.java

    r5093 r7668  
    3939 * 
    4040 * <dl><dt><b>Source code:</b></dt> 
    41  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/SliceToggler.java">Trac</a>, 
    42  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/SliceToggler.java">SVN</a></dd></dl> 
     41 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/SliceToggler.java">Trac</a>, 
     42 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/SliceToggler.java">SVN</a></dd></dl> 
    4343 */ 
    4444public class SliceToggler extends DialogPane { 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/StackHandler.java

    r5093 r7668  
    4444 * 
    4545 * <dl><dt><b>Source code:</b></dt> 
    46  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/StackHandler.java">Trac</a>, 
    47  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/StackHandler.java">SVN</a></dd></dl> 
     46 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/StackHandler.java">Trac</a>, 
     47 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/StackHandler.java">SVN</a></dd></dl> 
    4848 */ 
    4949public class StackHandler extends TransformHandler { 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/StackLink.java

    r5093 r7668  
    6565 * 
    6666 * <dl><dt><b>Source code:</b></dt> 
    67  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/StackLink.java">Trac</a>, 
    68  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/StackLink.java">SVN</a></dd></dl> 
     67 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/StackLink.java">Trac</a>, 
     68 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/StackLink.java">SVN</a></dd></dl> 
    6969 */ 
    7070public class StackLink extends TransformLink { 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/StackPanel.java

    r5093 r7668  
    4343 * 
    4444 * <dl><dt><b>Source code:</b></dt> 
    45  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/StackPanel.java">Trac</a>, 
    46  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/StackPanel.java">SVN</a></dd></dl> 
     45 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/StackPanel.java">Trac</a>, 
     46 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/StackPanel.java">SVN</a></dd></dl> 
    4747 */ 
    4848public class StackPanel extends TransformPanel { 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/TransformHandler.java

    r5093 r7668  
    6262 * 
    6363 * <dl><dt><b>Source code:</b></dt> 
    64  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/TransformHandler.java">Trac</a>, 
    65  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/TransformHandler.java">SVN</a></dd></dl> 
     64 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/TransformHandler.java">Trac</a>, 
     65 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/TransformHandler.java">SVN</a></dd></dl> 
    6666 */ 
    6767public class TransformHandler implements ChangeListener, Runnable, Saveable { 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/TransformLink.java

    r5093 r7668  
    7070 * 
    7171 * <dl><dt><b>Source code:</b></dt> 
    72  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/TransformLink.java">Trac</a>, 
    73  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/TransformLink.java">SVN</a></dd></dl> 
     72 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/TransformLink.java">Trac</a>, 
     73 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/TransformLink.java">SVN</a></dd></dl> 
    7474 */ 
    7575public class TransformLink 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/TransformPanel.java

    r5093 r7668  
    6363 * 
    6464 * <dl><dt><b>Source code:</b></dt> 
    65  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/TransformPanel.java">Trac</a>, 
    66  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/TransformPanel.java">SVN</a></dd></dl> 
     65 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/TransformPanel.java">Trac</a>, 
     66 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/TransformPanel.java">SVN</a></dd></dl> 
    6767 */ 
    6868public class TransformPanel extends JPanel 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/ViewHandler.java

    r5093 r7668  
    5050 * 
    5151 * <dl><dt><b>Source code:</b></dt> 
    52  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/ViewHandler.java">Trac</a>, 
    53  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/ViewHandler.java">SVN</a></dd></dl> 
     52 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/ViewHandler.java">Trac</a>, 
     53 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/ViewHandler.java">SVN</a></dd></dl> 
    5454 */ 
    5555public class ViewHandler implements Saveable { 
  • trunk/projects/visbio/src/main/java/loci/visbio/view/ViewPanel.java

    r5093 r7668  
    4747 * 
    4848 * <dl><dt><b>Source code:</b></dt> 
    49  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/src/loci/visbio/view/ViewPanel.java">Trac</a>, 
    50  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/src/loci/visbio/view/ViewPanel.java">SVN</a></dd></dl> 
     49 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/main/java/loci/visbio/view/ViewPanel.java">Trac</a>, 
     50 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/main/java/loci/visbio/view/ViewPanel.java">SVN</a></dd></dl> 
    5151 */ 
    5252public class ViewPanel extends JPanel 
  • trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/DummyImageTransform.java

    r6047 r7668  
    3232 * 
    3333 * <dl><dt><b>Source code:</b></dt> 
    34  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/test/loci/visbio/utests/overlays/DummyImageTransform.java">Trac</a>, 
    35  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/test/loci/visbio/utests/overlays/DummyImageTransform.java">SVN</a></dd></dl> 
     34 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/DummyImageTransform.java">Trac</a>, 
     35 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/DummyImageTransform.java">SVN</a></dd></dl> 
    3636 */ 
    3737public class DummyImageTransform extends ImageTransform{ 
  • trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/DummyOverlayTransform.java

    r6047 r7668  
    3535 * 
    3636 * <dl><dt><b>Source code:</b></dt> 
    37  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/test/loci/visbio/utests/overlays/DummyOverlayTransform.java">Trac</a>, 
    38  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/test/loci/visbio/utests/overlays/DummyOverlayTransform.java">SVN</a></dd></dl> 
     37 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/DummyOverlayTransform.java">Trac</a>, 
     38 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/DummyOverlayTransform.java">SVN</a></dd></dl> 
    3939 */ 
    4040public class DummyOverlayTransform extends OverlayTransform 
  • trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/OverlayNodedObjectTest.java

    r6047 r7668  
    3131 * 
    3232 * <dl><dt><b>Source code:</b></dt> 
    33  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/test/loci/visbio/utests/overlays/OverlayNodedObjectTest.java">Trac</a>, 
    34  * <a href="https://skyking.microscopy.wisc.edu/svn/java/trunk/components/visbio/test/loci/visbio/utests/overlays/OverlayNodedObjectTest.java">SVN</a></dd></dl> 
     33 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/OverlayNodedObjectTest.java">Trac</a>, 
     34 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/OverlayNodedObjectTest.java">SVN</a></dd></dl> 
    3535 */ 
    3636public class OverlayNodedObjectTest extends TestCase { 
  • trunk/projects/visbio/src/test/java/loci/visbio/utests/util/MathUtilTest.java

    r6047 r7668  
    3131 * 
    3232 * <dl><dt><b>Source code:</b></dt> 
    33  * <dd><a href="https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/visbio/test/loci/visbio/utests/util/MathUtilTest.java">Trac</a>, 
    34