Ignore:
Timestamp:
03/22/11 17:06:13 (9 years ago)
Author:
curtis
Message:

Clean up headers, and add a script to check them.

Location:
trunk/projects/slim-plugin/src/main/java/loci/slim/analysis
Files:
6 edited

Legend:

Unmodified
Added
Removed
  • trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/ISLIMAnalyzer.java

    r7295 r7668  
     1// 
     2// ISLIMAnalyzer.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim.analysis; 
     
    1443/** 
    1544 * An interface for analyzing the results of a SLIM Plugin fit. 
    16  *  
     45 * 
     46 * <dl><dt><b>Source code:</b></dt> 
     47 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/ISLIMAnalyzer.java">Trac</a>, 
     48 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/ISLIMAnalyzer.java">SVN</a></dd></dl> 
     49 * 
    1750 * @author Aivar Grislis 
    1851 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalysis.java

    r7658 r7668  
     1// 
     2// SLIMAnalysis.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim.analysis; 
     
    2251 
    2352/** 
     53 * TODO 
     54 * 
     55 * <dl><dt><b>Source code:</b></dt> 
     56 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalysis.java">Trac</a>, 
     57 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalysis.java">SVN</a></dd></dl> 
    2458 * 
    2559 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalyzer.java

    r7199 r7668  
     1// 
     2// SLIMAnalyzer.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim.analysis; 
     
    2049 *  @Name("Analyzer") 
    2150 * 
     51 * <dl><dt><b>Source code:</b></dt> 
     52 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalyzer.java">Trac</a>, 
     53 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalyzer.java">SVN</a></dd></dl> 
     54 * 
    2255 * @author Aivar Grislis 
    2356 */ 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java

    r7658 r7668  
    6262/** 
    6363 * A plugin within a plugin, this is used to display the fit results. 
     64 * 
     65 * <dl><dt><b>Source code:</b></dt> 
     66 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java">Trac</a>, 
     67 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java">SVN</a></dd></dl> 
    6468 * 
    6569 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/ExportToText.java

    r7663 r7668  
     1// 
     2// ExportToText.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim.analysis.plugins; 
     
    3059/** 
    3160 * Exports to text for further analysis of SLIMPlugin results. 
     61 * 
     62 * <dl><dt><b>Source code:</b></dt> 
     63 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/ExportToText.java">Trac</a>, 
     64 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/ExportToText.java">SVN</a></dd></dl> 
    3265 * 
    3366 * @author Aivar Grislis 
  • trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/VisADAnalysisPlugin.java

    r7616 r7668  
     1// 
     2// VisADAnalysisPlugin.java 
     3// 
     4 
    15/* 
    2  * To change this template, choose Tools | Templates 
    3  * and open the template in the editor. 
    4  */ 
     6SLIMPlugin for combined spectral-lifetime image analysis. 
     7 
     8Copyright (c) 2010, UW-Madison LOCI 
     9All rights reserved. 
     10 
     11Redistribution and use in source and binary forms, with or without 
     12modification, are permitted provided that the following conditions are met: 
     13    * Redistributions of source code must retain the above copyright 
     14      notice, this list of conditions and the following disclaimer. 
     15    * Redistributions in binary form must reproduce the above copyright 
     16      notice, this list of conditions and the following disclaimer in the 
     17      documentation and/or other materials provided with the distribution. 
     18    * Neither the name of the UW-Madison LOCI nor the 
     19      names of its contributors may be used to endorse or promote products 
     20      derived from this software without specific prior written permission. 
     21 
     22THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
     23AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
     24IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
     25ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE 
     26LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
     27CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
     28SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
     29INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
     30CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
     31ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
     32POSSIBILITY OF SUCH DAMAGE. 
     33*/ 
    534 
    635package loci.slim.analysis.plugins; 
     
    2554 * This will run on a separate thread, control returns to the caller right away. 
    2655 * 
     56 * <dl><dt><b>Source code:</b></dt> 
     57 * <dd><a href="http://dev.loci.wisc.edu/trac/software/browser/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/VisADAnalysisPlugin.java">Trac</a>, 
     58 * <a href="http://dev.loci.wisc.edu/svn/software/trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/VisADAnalysisPlugin.java">SVN</a></dd></dl> 
     59 * 
    2760 * @author Aivar Grislis 
    2861 */ 
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