source: @ 3146

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Diff Rev Age Author Log Message
(edit) @3146   12 years curtis Add Charles's 4D Java apps to archive.
(edit) @3145   12 years curtis Add command line XML validation tool.
(edit) @3144   12 years curtis Add command line tool for indenting XML.
(edit) @3143   12 years curtis Split non-OME-XML-specific XML functionality into separate XMLTools class. …
(edit) @3142   12 years curtis Add macro extensions to what's new list.
(edit) @3141   12 years curtis Tweak what's new.
(edit) @3140   12 years melissa Updated ND2 doc and what's new for next release.
(edit) @3139   12 years melissa Finished indexed color logic.
(edit) @3138   12 years curtis Point command line tools to new locations in loci.formats.tools package.
(edit) @3137   12 years curtis Migrate complex command line tools into their own package, to provide a …
(edit) @3136   12 years curtis Remove comment about CDATA not being handled (since it is now).
(edit) @3135   12 years curtis Add "wavelength" and "time" as prefixes for C and T, respectively. This …
(edit) @3134   12 years melissa Removed debugging stuff.
(edit) @3133   12 years melissa Preliminary support for tiled ZVI images - still need to remove …
(edit) @3132   12 years melissa Marked a bunch of readers as having complete metadata.
(edit) @3131   12 years melissa More work on indexed color stuff; minor bugfixes in ZVI and Perkin Elmer.
(edit) @3130   12 years curtis Add -version command line flag.
(edit) @3129   12 years curtis Whitespace.
(edit) @3128   12 years curtis Fix jikes warnings.
(edit) @3127   12 years melissa Oops, forgot to add IndexedColorModel.
(edit) @3126   12 years melissa For now, attempting to merge/separate indexed images has no effect.
(edit) @3125   12 years melissa Added API methods for working with indexed color images, and implemented …
(edit) @3124   12 years curtis * Preserve existing codec if none has been set using the IFormatWriter …
(edit) @3123   12 years melissa Commented out Motion JPEG-B codec.
(edit) @3122   12 years curtis A simple utility to filter out duplicate stack traces.
(edit) @3121   12 years curtis Fix compile errors.
(edit) @3120   12 years melissa Miscellaneous bugfixes.
(edit) @3119   12 years curtis Latest VisAD library.
(edit) @3118   12 years curtis Initial skeleton for Bio-Formats Metadata Guide.
(edit) @3117   12 years curtis Add link to online Javadocs.
(edit) @3116   12 years curtis Remove unused MetadataStoreException.
(edit) @3115   12 years curtis Add DummyMetadata as default metadata retrieval object. Throw …
(edit) @3114   12 years curtis Rename DummyMetadataStore to DummyMetadata, and implement …
(edit) @3113   12 years melissa Fixed offset calculation heuristic.
(edit) @3112   12 years curtis Remove unnecessary createRoot calls.
(edit) @3111   12 years curtis Fix more compile errors.
(edit) @3110   12 years curtis Fix more compile errors.
(edit) @3109   12 years melissa Fixed compile errors.
(edit) @3108   12 years curtis 1. Cleaned up MetadataStore and MetadataRetrieve interface usage: * …
(edit) @3107   12 years melissa Added support for zlib-compressed pixel data.
(edit) @3106   12 years curtis Clean up isThisType(String, boolean) methods a little bit more.
(edit) @3105   12 years curtis Add notes on loci.formats.ome dependencies; comment out some code.
(edit) @3104   12 years curtis A bunch of miscellaneous bugfixes and tweaks: * Remove some faulty …
(edit) @3103   12 years curtis Fix up spreadsheet process launcher -- but still broken on Mac OS X.
(edit) @3102   12 years curtis Add hack to work around another WiscScan bug.
(edit) @3101   12 years curtis Use exception chaining to preserve root causes of exceptions.
(edit) @3100   12 years melissa Better error messages in the exporter.
(edit) @3099   12 years melissa Added missing import.
(edit) @3098   12 years melissa Fixed how metadata is split between series.
(edit) @3097   12 years curtis Whitespace.
(edit) @3096   12 years curtis Fix bug in buffer allocation.
(edit) @3095   12 years curtis Remove .2, .3 and .4 from valid extensions list.
(edit) @3094   12 years melissa Fixed bug reported by Venu Kesireddy.
(edit) @3093   12 years melissa Fixed Z/T size bug.
(edit) @3092   12 years melissa Fixed to work with omebf.
(edit) @3091   12 years melissa Fixed how custom LUTs are handled in Leica LEI files.
(edit) @3090   12 years curtis Fix XML error with javadoc element.
(edit) @3089   12 years curtis Do not include deprecated methods in Javadoc.
(edit) @3088   12 years curtis Fix the series name fix.
(edit) @3087   12 years curtis More verbose error reporting.
(edit) @3086   12 years curtis Initial skeleton for Bio-Formats ImageJ macro extensions. Several key …
(edit) @3085   12 years curtis Tweak.
(edit) @3084   12 years curtis Add Melissa as an author.
(edit) @3083   12 years curtis Move file grouping constants into format reader interface.
(edit) @3082   12 years curtis Fix bug Christophe Leterrier found with missing series names.
(edit) @3081   12 years curtis Minor UI tweaks.
(edit) @3080   12 years curtis Fix problem with getZCTCoords and getIndex for YX dimension orders.
(edit) @3079   12 years curtis Add option to override dimension order (tests DimensionSwapper class).
(edit) @3078   12 years curtis * Fix bug in dimension swapper with incorrect OME-XML Pixels population. …
(edit) @3077   12 years curtis Reorganize display controls to be tabbed instead of sprawling. This will …
(edit) @3076   12 years melissa Fixed to work with omebf.
(edit) @3075   12 years curtis Fix arbitrary slicing efficiency bug.
(edit) @3074   12 years melissa Preserve user-specified file ordering.
(edit) @3073   12 years melissa Fixed Prairie and ICS readers to work with omebf.
(edit) @3072   12 years curtis Fix typo.
(edit) @3071   12 years curtis Minor tweaks.
(edit) @3070   12 years curtis Update copyright notice to include Abe.
(edit) @3069   12 years curtis Clean up tutorial a little.
(edit) @3068   12 years curtis * Include PNGs for overlays tutorial in VisBio resources. * Remove …
(edit) @3067   12 years curtis Guess at good default opacity settings when volume rendering is first …
(edit) @3066   12 years curtis Disable save check until state logic can be thoroughly fixed.
(edit) @3065   12 years curtis Use reasonable default name when saving or exporting overlay data.
(edit) @3064   12 years curtis Allow 4 range components in ImageFlatField.
(edit) @3063   12 years curtis Refix initial skeleton schemaLocation attribute.
(edit) @3062   12 years curtis Only report no errors if, in fact, there were no errors.
(edit) @3061   12 years curtis Output all XML validation errors, not just the first.
(edit) @3060   12 years melissa Set the file name as the default image name.
(edit) @3059   12 years melissa Removed plane flipping logic.
(edit) @3058   12 years curtis Workaround for NullPointerException.
(edit) @3057   12 years curtis Add option to toggle stereo displays on or off.
(edit) @3056   12 years curtis Fix stupid dimensional position bug.
(edit) @3055   12 years curtis Fix compile error.
(edit) @3054   12 years curtis Several bugfixes to ImprovisionTiffReader.isThisType.
(edit) @3053   12 years curtis Fix color reset bug when adding transforms to a display. Temporary fix; …
(edit) @3052   12 years curtis Fix problem with OME-XML validation on Linux.
(edit) @3051   12 years curtis Add option to brute force past accessibility restrictions.
(edit) @3050   12 years curtis Better Javadoc.
(edit) @3049   12 years curtis Some improvements to reflected universe functionality: * direct variable …
(edit) @3048   12 years curtis More optimizations for ND2 initialization step.
(edit) @3047   12 years melissa Remove invalid metadata.
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