source: @ 3400

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Diff Rev Age Author Log Message
(edit) @3400   13 years melissa 2007 Nov 21 release of LOCI Tools
(edit) @3399   13 years melissa 2007 Nov 21 release of LOCI Tools
(edit) @3398   13 years melissa 2007 Nov 21 release of LOCI Tools
(edit) @3397   13 years melissa Fixed bug with slicing 12 channel data.
(edit) @3396   13 years curtis Use isInstance rather than equals for class matching test.
(edit) @3395   13 years melissa Added new IFormatReader API method - "IFormatReader[] …
(edit) @3394   13 years melissa Formats that don't support multiple series now set the Image name to null, …
(edit) @3393   13 years curtis Bugfixes and corrections for 2003 (FC) version.
(edit) @3392   13 years melissa * Fixed SimplePCI endianness * Fixed PICT channel separation bug * Fixed …
(edit) @3391   13 years melissa Updated for next release.
(edit) @3390   13 years melissa Double the values of StripByteCounts for files with no RowsPerStrip entry …
(edit) @3389   13 years melissa Automatically apply the LUT, instead of having isIndexed() return true; …
(edit) @3388   13 years melissa Fixed axis size parsing logic.
(edit) @3387   13 years curtis Remove obsolete XML validation helper class.
(edit) @3386   13 years curtis Split LineTracker into separate source file.
(edit) @3385   13 years curtis Allow multiple Plane elements per Pixels.
(edit) @3384   13 years curtis Add handling for node types unsupported by certain versions (e.g., …
(edit) @3383   13 years curtis Add notation for 2003/CA-style ID reference path chains.
(edit) @3382   13 years curtis Update author information in About dialog.
(edit) @3381   13 years curtis Remove cruft.
(edit) @3380   13 years curtis Readd junit.jar as external library dependency.
(edit) @3379   13 years curtis Move native code to libs folder; update build script.
(edit) @3378   13 years curtis Throw a proper FormatException for various problems.
(edit) @3377   13 years melissa Fixed another endian issue.
(edit) @3376   13 years melissa Fixed endian problem.
(edit) @3375   13 years melissa Added JAR/native library files needed to read lossless JPEG.
(edit) @3374   13 years melissa 16 bit data is now undifferenced properly.
(edit) @3373   13 years melissa * Removed separate FileStitcher, since data browser integration is much …
(edit) @3372   13 years melissa * Updated POI to use significantly less memory, which required a few …
(edit) @3371   13 years melissa Check pixel type before doing user-specified merge; don't pass …
(edit) @3370   13 years melissa Removed unnecessary imports/debugging statements.
(edit) @3369   13 years melissa Lossless JPEG is now supported, if JAI (with native code) is installed. …
(edit) @3368   13 years melissa * Removed several hacks that were designed to correct for POI …
(edit) @3367   13 years melissa Fixed sizeC detection.
(edit) @3366   13 years melissa Updated poi-loci.jar - fixes a couple of bugs with files that have a big …
(edit) @3365   13 years melissa Added windowless importer - reads options from IJ_Prefs.txt, but doesn't …
(edit) @3364   13 years curtis Fill in setter method bodies; miscellaneous progress.
(edit) @3363   13 years melissa Reset previousImage if the series number was changed.
(edit) @3362   13 years melissa * Lots of work on data browser; it now uses the caching logic in …
(edit) @3361   13 years melissa Read each resolution level into its own series.
(edit) @3360   13 years melissa Place OriginalMetadata key/value pairs in the metadata hashtable.
(edit) @3359   13 years melissa Compare the primary file's used file list against FilePattern's file list …
(edit) @3358   13 years melissa Implemented new sub-image API methods - this should have been in r3357.
(edit) @3357   13 years melissa Added new API methods to read sub-images: - BufferedImage openImage(int …
(edit) @3356   13 years melissa Use FormatTools.populatePixels to set MetadataStore's 'Pixels' …
(edit) @3355   13 years melissa * Added two new API methods - 'boolean isInCache(int[])' and 'boolean …
(edit) @3354   13 years melissa close() methods now clear *all* variables; added signed pixel support in …
(edit) @3353   13 years melissa Append the appropriate Z, C and T indices to the window title.
(edit) @3352   13 years curtis Minor tweaks.
(edit) @3351   13 years curtis Flesh out the metadata guide a bit more.
(edit) @3350   13 years curtis Use properly capitalized pixel type for Uint8.
(edit) @3349   13 years curtis Fix xsi:schemaLocation.
(edit) @3348   13 years melissa Retrieve OME-XML block directly from first IFD, without relying on …
(edit) @3347   13 years curtis Exclude loci.formats.auto package from bio-formats.jar build.
(edit) @3346   13 years curtis Use class resources instead of files directly; output files with proper …
(edit) @3345   13 years curtis Framework for autogenerating MetadataStore/MetadataRetrieve interfaces and …
(edit) @3344   13 years curtis Add one-time dialog for Mac users warning about OLE2 column view crash …
(edit) @3343   13 years melissa Removed unnecessary getIFDs call.
(edit) @3342   13 years melissa Giving lse.xml file to BioRadReader will now open entire dataset.
(edit) @3341   13 years melissa Fixed interleaving bug for real this time.
(edit) @3340   13 years melissa Fixed interleaving bug.
(edit) @3339   13 years melissa Don't try to decompress more bytes than are needed.
(edit) @3338   13 years melissa Find and group PIC files if lse.xml companion file is present.
(edit) @3337   13 years melissa CustomImage can now merge up to 4 channels.
(edit) @3336   13 years melissa Make sure PixelSizeZ is always parsed, even if SizeZ == 1.
(edit) @3335   13 years melissa Don't throw an exception if a Z stamp is encountered when we are expecting …
(edit) @3334   13 years melissa More reliable pixel size parsing.
(edit) @3333   13 years melissa Slicer now implements PlugInFilter, preventing an exception when there are …
(edit) @3332   13 years melissa Catch UnsupportedClassVersionError when creating ReflectedUniverse - this …
(edit) @3331   13 years melissa Catch EOFException when parsing image files.
(edit) @3330   13 years melissa Fixed merging bug.
(edit) @3329   13 years melissa Calculate pixel sizes if they aren't stored explicitly.
(edit) @3328   13 years melissa Make sure pixel sizes get reset; check for invalid min/max values before …
(edit) @3327   13 years melissa Set pixel type correctly for signed images.
(edit) @3326   13 years curtis No more need for omebf script.
(edit) @3325   13 years melissa Better string trimming.
(edit) @3324   13 years melissa Make sure that window titles are <= 128 chars.
(edit) @3323   13 years melissa Populate PixelSize*, if values exist in metadata; better parsing of …
(edit) @3322   13 years melissa Fixed endianness.
(edit) @3321   13 years melissa * Removed a bunch of unnecessary axis size calculation logic from …
(edit) @3320   13 years melissa Multiple series are now correctly detected; replaced evil axis …
(edit) @3319   13 years curtis Remove unnecessary imports.
(edit) @3318   13 years curtis Typo.
(edit) @3317   13 years curtis Workaround for XML parsing bug with SAX on Windows and Mac OS X.
(edit) @3316   13 years melissa Reorganized MetadataStore population logic - calls to setLogicalChannel …
(edit) @3315   13 years melissa Temporary hack to unbreak openBytes(int, byte[]).
(edit) @3314   13 years curtis Remove unnecessary import.
(edit) @3313   13 years curtis Print exceptions to Results window rather than with IJ.showMessage or …
(edit) @3312   13 years curtis Remove references to the optional loci.formats.tools package.
(edit) @3311   13 years melissa Removed unnecessary import statements.
(edit) @3310   13 years curtis Add NetCDF libraries to build properties.
(edit) @3309   13 years melissa Added support for Imaris 5.5 (HDF-based).
(edit) @3308   13 years melissa Implemented openBytes(int).
(edit) @3307   13 years melissa Added command-line flags to ImageConverter (-merge, -separate, -stitch, …
(edit) @3306   13 years curtis Fix problem with LuraWave compression.
(edit) @3305   13 years melissa Added stack slicing plugin, which replaces the channel splitting logic in …
(edit) @3304   13 years melissa Better indexed color support in Zeiss LSM.
(edit) @3303   13 years melissa Minor adjustment to offset calculation.
(edit) @3302   13 years melissa Set indexed = false if the lookup table is too small.
(edit) @3301   13 years melissa Temporarily commented out Cinepak logic.
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