source: @ 7106

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Diff Rev Age Author Log Message
(edit) @7106   9 years melissa Updated metadata support documentation.
(edit) @7105   9 years hinerm Adjusted canDoDirect to be true if the image is interleaved (avoiding …
(edit) @7104   9 years melissa Updated version numbers to "4.2.1-DEV".
(edit) @7103   9 years melissa Backported r7084 to 4.2.
(edit) @7102   9 years melissa Backported r7055 to 4.2.
(edit) @7101   9 years melissa Backported r7051 to 4.2.
(edit) @7100   9 years melissa Backported r7042 to 4.2.
(edit) @7099   9 years melissa Backported Zeiss LSM stage position changes to 4.2: r7040 and r7043.
(edit) @7098   9 years melissa Backported r7037 to 4.2.
(edit) @7097   9 years melissa Backported file stitching changes to 4.2: r7021, r7022, r7070, r7071, …
(edit) @7096   9 years melissa Backported native component changes to 4.2: r7014, r7035, r7036, r7049, …
(edit) @7095   9 years melissa Backported r7012 and r7013 to 4.2.
(edit) @7094   9 years rlentz Converted to Maven Project for ease of download
(edit) @7093   9 years melissa Various tweaks to file grouping logic, so that datasets can be read even …
(edit) @7092   9 years melissa Only populate Objective.NominalMagnification if the magnification is …
(edit) @7091   9 years melissa * Attempt to gracefully handle truncated Deltavision files. See QA #2892, …
(edit) @7090   9 years melissa Override get*LookupTable() so that LUTs are returned where appropriate. …
(edit) @7089   9 years melissa Skip over ROI files that do not exist, instead of throwing an exception.
(edit) @7088   9 years aivar Default to 'each pixel' fit.
(edit) @7087   9 years aivar Commented out excessive printouts that slow down the fit.
(edit) @7086   9 years melissa A few more file stitching fixes.
(edit) @7085   9 years melissa Close unused file handles.
(edit) @7084   9 years melissa Fixed a few deprecation warnings and compile errors.
(edit) @7083   9 years melissa Added better type detection to the text reader, see  omero:#2740.
(edit) @7082   9 years aivar Removed imagej/ij/1.43, added imagej/ij/2.0-SNAPSHOT, …
(edit) @7081   9 years aivar First plugins config file.
(edit) @7080   9 years aivar Borrowed from SLIMPlotter.
(edit) @7079   9 years aivar Many changes to SLIMProcessor, mostly for automatic plugin.
(edit) @7078   9 years aivar New version of SLIM_Plugin, moved out of the default package.
(edit) @7077   9 years aivar Automatically executed version of SLIM Plugin.
(edit) @7076   9 years melissa Fixed potential ArrayIndexOutOfBounds which prevented tests from passing …
(edit) @7075   9 years melissa * Fixed various file stitching bugs. * Removed debugging statement.
(edit) @7074   9 years melissa Parse stage positions from Fluoview/Andor TIFFs.
(edit) @7073   9 years melissa Populate physical sizes for all series.
(edit) @7072   9 years melissa Using bfconvert with an existing output file will now cause that output …
(edit) @7071   9 years melissa Fixed bugs that prevented tests from passing in r7070.
(edit) @7070   9 years melissa Added support for non-numerical file pattern blocks, closes #395. You can …
(edit) @7069   9 years curtis Minor tweaks.
(edit) @7068   9 years melissa Finally finished fixing original metadata population, closes #564. We now …
(edit) @7067   9 years melissa Backported r7038 to 4.2.
(edit) @7066   9 years melissa Allow a different stage position for each plane.
(edit) @7065   9 years curtis Fix compile error with Java 1.5.
(edit) @7064   9 years curtis Add bf-imglib dependency to slim-plugin POM.
(edit) @7063   9 years melissa Prevent Bio-Rad reader from attempting to initialize ._*.pic files. See …
(edit) @7062   9 years aivar Fixed build problem.
(edit) @7061   9 years aivar Extensive changes: Refactored into packages. New interface.
(edit) @7060   9 years aivar Extensive changes: Refactored into packages. New interface.
(edit) @7059   9 years aivar Extensive changes: Refactored into packages. New interface.
(edit) @7058   9 years aivar Extensive changes: Refactored into packages. New interface.
(edit) @7057   9 years melissa Fixed PICT sub-image reading, see  omero:#3037.
(edit) @7056   9 years melissa Moved SizeT population, so that we do not attempt to populate it when …
(edit) @7055   9 years melissa Standardized storage of stage positions in the original metadata …
(edit) @7054   9 years melissa Reverted r7018, see #570.
(edit) @7053   9 years melissa Parse physical pixel sizes.
(edit) @7052   9 years melissa Fixed a handful of lovely dimension detection bugs.
(edit) @7051   9 years callan Handle NPE when accessing UUID filename. (Fixes downstream  omero:#3038)
(edit) @7050   9 years hinerm Improvement: prevented null assignment of path to libraries
(edit) @7049   9 years hinerm Improvement: The BF-ITK plug-in now detects where its libraries live, vita …
(edit) @7048   9 years curtis Backport latest loci-plugins unit tests to Maven branch.
(edit) @7047   9 years curtis Backport latest loci-plugins trunk to Maven branch.
(edit) @7046   9 years melissa Fixed slice updating in the Data Browser; closes #579.
(edit) @7045   9 years curtis Merge latest LOCI Common trunk to Maven branch.
(edit) @7044   9 years curtis Backport latest Bio-Formats trunk to Maven branch.
(edit) @7043   9 years melissa Fixed stage position indices, see #576.
(edit) @7042   9 years melissa Parse and apply channel colors stored in ND2 files.
(edit) @7041   9 years melissa Added support for pixel types other than uint8.
(edit) @7040   9 years melissa Progress on reading position data from LSM files. See #576, see #570.
(edit) @7039   9 years melissa Several metadata population fixes.
(edit) @7038   9 years melissa Adjusted original metadata population, so that it doesn't take nearly as …
(edit) @7037   9 years melissa One more very temporary fix that prevents too many Channels from being …
(edit) @7036   9 years hinerm Added private data members to allow use of ChannelSeparators and …
(edit) @7035   9 years hinerm Bug Fixes: read image data from start to start + count, instead of start …
(edit) @7034   9 years aivar Deal with sigma and instrument response.
(edit) @7033   9 years aivar Deal with sigma and instrument response.
(edit) @7032   9 years aivar Deal with sigma and instrument response.
(edit) @7031   9 years aivar Deal with sigma and instrument response.
(edit) @7030   9 years aivar Deal with sigma and instrument response.
(edit) @7029   9 years aivar Deal with sigma and instrument response.
(edit) @7028   9 years aivar Deal with sigma and instrument response.
(edit) @7027   9 years aivar Deal with sigma and instrument response.
(edit) @7026   9 years aivar Deal with sigma and instrument response.
(edit) @7025   9 years aivar Deal with sigma and instrument response.
(edit) @7024   9 years aivar TIdy up code.
(edit) @7023   9 years aivar TIdy up code.
(edit) @7022   9 years melissa Fixed a few little bugs that prevented tests from passing in r7021.
(edit) @7021   9 years melissa Updated FileStitcher and FilePattern to better handle multi-series …
(edit) @7020   9 years melissa Hide temporary files in a subdirectory of /tmp, so that the tests are …
(edit) @7019   9 years melissa Added support for RGB and indexed color images. Closes #567.
(edit) @7018   9 years melissa Sets the Calibration.*Origin values to equal the stage position (if …
(edit) @7017   9 years aivar Debugging: print out info on pixels with 'bad' fit: calculated lifetime …
(edit) @7016   9 years aivar Added SLIMCURVE fit algorithms.
(edit) @7015   9 years aivar Added SLIMCURVE fit algorithms.
(edit) @7014   9 years hinerm Bug Fix: Converted logging functions from Log::getStackTrace to …
(edit) @7013   9 years callan Resolving issues with Reference instances (with their referrer ID) ending …
(edit) @7012   9 years callan Fix a couple small issues with the SPW model mock and In/Out test.
(edit) @7011   9 years rlentz
(edit) @7010   9 years melissa Fixed a bug that prevented extra LIF channels from being removed. Closes …
(edit) @7009   9 years melissa Fixed SVN/Trac links.
(edit) @7008   9 years melissa Added missing files.
(edit) @7007   9 years melissa Merged remainder of build, test, and SVN/Trac link changes to 4.2.
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