source: @ 7937

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Diff Rev Age Author Log Message
(edit) @7937   8 years aivar SLIM Plugin: New "FitterEstimator" class was missing when fitting images; …
(edit) @7936   8 years aivar SLIM Plugin: Working on cursor problems.
(edit) @7935   8 years aivar SLIM Plugin: Working on cursor problems.
(edit) @7934   8 years curtis Fix JDK6 compile errors Switching on Strings only works with JDK7+.
(edit) @7933   8 years aivar SLIM Plugin: Ticket #681: Missing lifetime LUT crashes the plugin; display …
(edit) @7932   8 years avivekan refactoring (1 of many to come)
(edit) @7931   8 years aivar SLIM Plugin: Tidied up some very hacky code that called the native library …
(edit) @7930   8 years aivar SLIM Plugin: Transient cursors not applied properly. Part of Ticket #678. …
(edit) @7929   8 years aivar SLIM Plugin: Transient cursors not applied properly. Part of Ticket #678.
(edit) @7928   8 years kbriney Populate structured annotations in injected XML with original Prairie …
(edit) @7927   8 years curtis Add assembly for prairie-ome-tiff JAR with deps This bundles all the …
(edit) @7926   8 years curtis Move ImageJ macro files out of Java source folder For now, I put them in …
(edit) @7925   8 years hinerm Updated CMakeLists template for Windows CMakeLists.txt generated using …
(edit) @7924   8 years curtis Update parent POM reference to latest version
(edit) @7923   8 years curtis Update parent POM reference to latest version
(edit) @7922   8 years aivar SLIM Plugin: Working on Trac #674 Ensure TRI2 and SLIMPlugin results …
(edit) @7921   8 years aivar SLIM Plugin: Working on Trac #674 Ensure TRI2 and SLIMPlugin results …
(edit) @7920   8 years avivekan new openFile method created
(edit) @7919   8 years avivekan open file method created for wiscscan
(edit) @7918   8 years avivekan changed some ints to floats to preserve precision, needed
(edit) @7917   8 years avivekan
(edit) @7916   8 years avivekan major flow code changes
(edit) @7915   8 years aivar SLIM Plugin: Working on double/int cursor discrepancies.
(edit) @7914   8 years kbriney Cleaned up comments in prairieInjector.
(edit) @7913   8 years curtis Set parent.relativePath for subprojects properly
(edit) @7912   8 years curtis Use newer version of scijava parent POM
(edit) @7911   8 years curtis Ignore Eclipse metadata and target folder
(edit) @7910   8 years aivar SLIM Plugin: Fixed cursor code bugs. Prompt cursors were not working at …
(edit) @7909   8 years curtis Fix newlines in wiscscan-java POM
(edit) @7908   8 years curtis Use scijava parent POM See:  http://github.com/scijava/scijava-common
(edit) @7907   8 years curtis Change name of CIS from Hudson to Jenkins
(edit) @7906   8 years curtis Generalize comment about project parent
(edit) @7905   8 years curtis Change base POM name to pom-loci This is more consistent with imagej2, …
(edit) @7904   8 years aivar SLIM Plugin: Rewrite of cursor code, tidy up UI and code. In progress.
(edit) @7903   8 years aivar SLIM Plugin: Changing start/stop bin integers to time value doubles to …
(edit) @7902   8 years aivar SLIM Plugin: Tweak to agree with TRI2.
(edit) @7901   8 years aivar SLIM Curve: Work in progress; tweak to agree with TRI2.
(edit) @7900   8 years curtis Fix whitespace
(edit) @7899   8 years melissa Really fix how the artifact lists are built for Maven 2 and 3 r7896 …
(edit) @7898   8 years melissa Downgrade version of Jace used by cppwrap Jace r61 has some oddities such …
(edit) @7897   8 years kbriney Fixed FileName attribute of UUID tag so that it gives only the file name …
(edit) @7896   8 years melissa Fix cppwrap-maven-plugin to work with Maven 3 We now iterate over all of …
(edit) @7895   8 years fong
(edit) @7894   8 years kbriney Updated dependencies so that injector can call PrairieReader (or other …
(edit) @7893   8 years avivekan small bugfix
(edit) @7892   8 years aivar SLIM Plugin: Work in progress; make sure fits agree with TRI2.
(edit) @7891   8 years aivar SLIM Plugin: Fit start and stop and the new estimate start got moved from …
(edit) @7890   8 years kbriney Fixed validation errors in UUID assignment. Fixed indexing in "FirstC", …
(edit) @7889   8 years aivar Fixed some channel bugs; started Estimator.
(edit) @7888   8 years aivar Fixed some channel bugs; started Estimator.
(edit) @7887   8 years aivar SLIM Plugin: Got multiple channel fitting working.
(edit) @7886   8 years aivar SLIMPlugin: Tidied up a bit. Fixed minor bugs in decay graph, histogram, …
(edit) @7885   8 years kbriney Fixed bug in 3rd regex group in prairie injector
(edit) @7884   8 years curtis Extract planar indices from filename using a regex
(edit) @7883   8 years curtis Add initial version of Prairie OME injection logic Code is still in …
(edit) @7882   8 years curtis Add comment reminding to fix issue with Maven 3.x
(edit) @7881   8 years curtis Add skeleton for Prairie OME-TIFF conversion tool
(edit) @7880   8 years curtis Use 4.4-SNAPSHOT for version of Bio-Formats JARs
(edit) @7879   8 years aivar Improved setting the LUT bounds with the histogram tool.
(edit) @7878   8 years aivar Removed annoying printout and IJ.log output.
(edit) @7877   8 years avivekan
(edit) @7876   8 years avivekan java code change to flow...again...edited plugin after meeting with …
(edit) @7875   8 years aivar Continued refactoring. Fitted image working better now.
(edit) @7874   8 years aivar Added 'noise' and 'chi_square_delta' parameters to SLIMCurve calls. Added …
(edit) @7873   8 years aivar Added 'noise' and 'chi_square_delta' parameters to SLIMCurve calls. Added …
(edit) @7872   8 years aivar Added 'noise' and 'chi_square_delta' parameters to EcfWrapper and JNI …
(edit) @7871   8 years avivekan modified flow code and macro
(edit) @7870   8 years avivekan added check for null, accidentally overlooked in previous commit
(edit) @7869   8 years avivekan hopefully working change to getBFParticleAreas(), was previously returning …
(edit) @7868   8 years avivekan
(edit) @7867   8 years aivar Refactoring.
(edit) @7866   8 years aivar Refactoring.
(edit) @7865   8 years aivar Refactoring
(edit) @7864   8 years aivar Refactoring.
(edit) @7863   8 years avivekan
(edit) @7862   8 years aivar Clean up image fitting code.
(edit) @7861   8 years aivar HistogramTool has problems finding the lifetime LUT on Linux when Fiji is …
(edit) @7860   8 years aivar More diagnostics for issue of multiple threads trying to load the native …
(edit) @7859   8 years aivar Bug with synchronization of multiple threads trying to load the native …
(edit) @7858   8 years aivar Starting Chart and CursorLayer/Cursor classes for IJ2, based on SLIMPlugin …
(edit) @7857   8 years aivar When the library loads tidied up logging and synchronized for …
(edit) @7856   8 years aivar Simplified the platform specific paths from "x86_64-MacOSX-gpp" to …
(edit) @7855   8 years aivar Took out '<arch>i386</arch>' in nar plugin configuration. Was a remnant …
(edit) @7854   8 years chainani fixed some scifio issue
(edit) @7853   8 years aivar Added a "with-libs" profile in POM and associated assembly.
(edit) @7852   8 years avivekan
(edit) @7851   8 years aivar Was a problem in the channel UI fitting images w/o channels.
(edit) @7850   8 years aivar Changed the hardcoded LUT path from platform specific to IJ relative.
(edit) @7849   8 years aivar New Lifetime LUT.
(edit) @7848   8 years aivar SLIMPlugin: shows colorized range of values using 254 color palette.
(edit) @7847   8 years aivar Format doubles to given number of digits. Entering new start/stop text …
(edit) @7846   8 years aivar Rearrange ui panel layout.
(edit) @7845   8 years aivar Got 254 color palette working in histogram color bar.
(edit) @7844   8 years aivar Added a PaletteFix class with static methods to aid in working with 254 …
(edit) @7843   8 years aivar Use 254 color LUTs
(edit) @7842   8 years aivar UI panel now has noise model, fitted images, and chi square target
(edit) @7841   8 years aivar Gets the noise model to the fitter.
(edit) @7840   8 years aivar OutputImageParser added
(edit) @7839   8 years aivar UI Changes
(edit) @7838   8 years aivar Continued work on histogram, add fields to user interface.
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