source: branches/4.1/components @ 7316

Revision Log Mode:


Legend:

Added
Modified
Copied or renamed
Diff Rev Age Author Log Message
(edit) @7316   9 years melissa Return a blank plane if a TIFF file is missing, just like we do with many …
(edit) @7287   9 years melissa Parse some more (undocumented) metadata from STK files, including channel …
(edit) @7246   10 years melissa Fixed channel name population.
(edit) @7235   10 years melissa Override get*BitLookupTable() methods so that files with a different LUT …
(edit) @7178   10 years melissa Don't correct the channel count in the case of RGB images.
(edit) @7169   10 years melissa Backported r6515, r6527, and most of r7071 to fix a few problems with …
(edit) @7152   10 years melissa Allow .rec extension for MRC files. isThisType(RandomAccessInputStream) …
(edit) @7141   10 years melissa * Backported r6227 to 4.1. * Fixed a subtle bug in calculating the pixel …
(edit) @7052   10 years melissa Fixed a handful of lovely dimension detection bugs.
(edit) @6983   10 years melissa Fixed various dimension ordering bugs in new multi-file Improvision TIFF …
(edit) @6975   10 years melissa One more set of ArrayIndexOutOfBounds fixes for certain LZW-compressed …
(edit) @6970   10 years melissa Support for multi-file Improvision/Volocity TIFF datasets.
(edit) @6968   10 years melissa Prevent ArrayIndexOutOfBoundsException when decompressing certain …
(edit) @6923   10 years callan Fixing infinite loop introduced by merging r6367 from Trunk. (See #560)
(edit) @6922   10 years callan Merging r6367 from Trunk. (See #560)
(edit) @6921   10 years callan A solution for file handles being left hanging around after close() on …
(edit) @6919   10 years callan Merging r6917 from Trunk.
(edit) @6855   10 years melissa Backported r6068 to 4.1.
(edit) @6826   10 years melissa Backported dimension detection changes.
(edit) @6822   10 years melissa Prevent extra (Logical)Channel objects from being populated.
(edit) @6803   10 years melissa Backported r6802 to 4.1 branch.
(edit) @6767   10 years melissa Fixed a couple of silly Photoshop bugs.
(edit) @6699   10 years melissa Fixed pixel data offset.
(edit) @6687   10 years melissa Fixed channel data is parsed from Leica LIF files that have had one or …
(edit) @6464   10 years melissa Backported r6463 to 4.1.
(edit) @6351   10 years melissa Fixed endianness bug that occurred when expected series were missing.
(edit) @6255   10 years melissa Ported r6254 to 4.1 branch.
(edit) @6222   10 years melissa Ported r6221 to 4.1 branch.
(edit) @6164   10 years melissa Ported a few channel splitting fixes from trunk.
(edit) @6123   10 years melissa Hopefully fixed XML parsing problems introduced in r6000.
(edit) @6111   10 years melissa Fixed how channel indices are reset.
(edit) @6105   10 years melissa Prevent Image.CreationDate and PlaneTiming.DeltaT from being populated …
(edit) @6087   10 years melissa Porting LIFReader changes from r6009 to 4.1 branch.
(edit) @6064   10 years melissa Ported r6063 to 4.1 branch.
(edit) @6051   10 years melissa Fixed NPE.
(edit) @6000   10 years melissa Adjusted XMLTools.parseXML implementations so that a new byte array is not …
(edit) @5991   10 years melissa Prevent an exception if the XML encoding is not specified and adjust the …
(edit) @5826   10 years melissa Fixed float/double parsing for ND2 files that have a decimal delimiter not …
(edit) @5773   10 years melissa Ported Flex/TIFF efficiency changes to 4.1 branch.
(edit) @5771   10 years melissa Ported r5770 to 4.1 branch.
(edit) @5759   10 years melissa Prevent an NPE if the EXIF IFD is invalid.
(edit) @5757   10 years melissa Tweaks to allow TIFFs with missing IFD pointers to be read.
(edit) @5730   10 years melissa Ignore image chunks that have a length of 0.
(edit) @5727   10 years melissa Updated documentation and what's new for today's release.
(edit) @5720   11 years melissa * Added a bunch of status messages to FlexReader. * Tweaked …
(edit) @5717   11 years melissa Merged r5714 into 4.1 branch.
(edit) @5716   11 years melissa * Updated metadata support documentation. * Updated branch version number …
(edit) @5712   11 years melissa * Merged r5706, r5636, and r5654 into 4.1 branch. * Fixed SizeC mismatch …
(edit) @5711   11 years melissa Bug fixes.
(edit) @5709   11 years melissa * Various bug fixes. * Reduced amount of memory required by ZeissZVIReader …
(edit) @5705   11 years melissa Allow Deltavision files to have non-standard extensions.
(edit) @5704   11 years melissa Removed InCell ROI parsing; closes #437.
(edit) @5703   11 years melissa Fixed LUT parsing for multi-file BioRad datasets.
(edit) @5696   11 years melissa Always ignore the file pattern if fileGroupOption(id) == MUST_GROUP.
(edit) @5695   11 years melissa Fixed AIOOB.
(edit) @5694   11 years melissa Prevent StringIndexOutOfBoundsException when parsing Objective data. …
(edit) @5693   11 years melissa * Throw a more informative exception if an invalid file pattern is passed …
(edit) @5691   11 years melissa One more Filter linkage fix.
(edit) @5690   11 years melissa Populate Shape.StrokeColor.
(edit) @5689   11 years callan Merging r5688 from Trunk
(edit) @5687   11 years melissa Fixed linkages for simultaneous scan files.
(edit) @5686   11 years melissa Tiling fixes.
(edit) @5685   11 years melissa MIAS masks are now packed bit masks.
(edit) @5684   11 years callan Merging r5628 and r5651 from Trunk
(edit) @5681   11 years melissa Ensure that the XML string starts with '<'.
(edit) @5680   11 years melissa Prevent StringIndexOutOfBoundsException when parsing key/value pairs.
(edit) @5679   11 years melissa Tweaked tiled image handling.
(edit) @5678   11 years melissa Place timestamps in original metadata hashtable and populate …
(edit) @5677   11 years melissa Prevent measurement files from being duplicated in the used file list.
(edit) @5676   11 years melissa Tweaked pixel offset calculation.
(edit) @5675   11 years melissa Check that TIFF comment has not been truncated.
(edit) @5664   11 years melissa Several minor bugfixes. Closes #430.
(edit) @5661   11 years melissa Override fileGroupOption(String) and populate WellSample.ImageRef.
(edit) @5657   11 years melissa Merged r5655 and r5656 into 4.1 branch.
(edit) @5653   11 years melissa Merged r5635 and r5652 into 4.1 branch.
(edit) @5625   11 years melissa * Tweaked ordering of used file list. * Updated metadata support docs. * …
(edit) @5621   11 years melissa Fixed offset calculation.
(edit) @5620   11 years melissa Fixed parsing of Metamorph ND files with 0 wavelengths and/or timepoints.
(edit) @5619   11 years melissa Fixed: * ZVI XML validation problems * LSM 4+ GB problems (modified from …
(edit) @5618   11 years melissa Fixed IPLab Mac type checking.
(edit) @5617   11 years melissa Fixed compile errors, for real this time.
(edit) @5616   11 years melissa Added missing files; should fix compile errors.
(edit) @5615   11 years melissa Syncing 4.1 branch with r5614.
(edit) @5614   11 years melissa Fixed several bugs exposed during testing.
(edit) @5612   11 years curtis Backport r5611 OME-TIFF writer fixes to 4.1 branch.
(edit) @5610   11 years melissa Added appendServerMap(String, String) method to FlexReader.
(edit) @5607   11 years melissa A few OME-XML validation fixes.
(edit) @5601   11 years melissa Fixed a few bugs, including Bio-Rad naming.
(edit) @5599   11 years melissa FlexReader.mapServer now ignores servers that don't exist (instead of …
(edit) @5597   11 years melissa Insert blank planes if one of the constituent files is not found; this is …
(edit) @5596   11 years melissa Fixed IPLab/IPLab Mac type detection and Deltavision Objective IDs.
(edit) @5595   11 years melissa Added support for double pixel type to FITS reader.
(edit) @5594   11 years melissa Updated to r5593, omitting r5590.
(copy) @5589   11 years melissa Branched for 4.1 release.
copied from trunk/components:
(edit) @5588   11 years curtis * Better separation of Jace and bf-cpp components. * Draft of …
Note: See TracRevisionLog for help on using the revision log.