source: branches/4.1 @ 6902

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Diff Rev Age Author Log Message
(edit) @6855   9 years melissa Backported r6068 to 4.1.
(edit) @6826   9 years melissa Backported dimension detection changes.
(edit) @6822   9 years melissa Prevent extra (Logical)Channel objects from being populated.
(edit) @6803   9 years melissa Backported r6802 to 4.1 branch.
(edit) @6767   9 years melissa Fixed a couple of silly Photoshop bugs.
(edit) @6699   9 years melissa Fixed pixel data offset.
(edit) @6687   9 years melissa Fixed channel data is parsed from Leica LIF files that have had one or …
(edit) @6464   10 years melissa Backported r6463 to 4.1.
(edit) @6351   10 years melissa Fixed endianness bug that occurred when expected series were missing.
(edit) @6255   10 years melissa Ported r6254 to 4.1 branch.
(edit) @6222   10 years melissa Ported r6221 to 4.1 branch.
(edit) @6164   10 years melissa Ported a few channel splitting fixes from trunk.
(edit) @6123   10 years melissa Hopefully fixed XML parsing problems introduced in r6000.
(edit) @6111   10 years melissa Fixed how channel indices are reset.
(edit) @6105   10 years melissa Prevent Image.CreationDate and PlaneTiming.DeltaT from being populated …
(edit) @6087   10 years melissa Porting LIFReader changes from r6009 to 4.1 branch.
(edit) @6064   10 years melissa Ported r6063 to 4.1 branch.
(edit) @6051   10 years melissa Fixed NPE.
(edit) @6000   10 years melissa Adjusted XMLTools.parseXML implementations so that a new byte array is not …
(edit) @5991   10 years melissa Prevent an exception if the XML encoding is not specified and adjust the …
(edit) @5826   10 years melissa Fixed float/double parsing for ND2 files that have a decimal delimiter not …
(edit) @5773   10 years melissa Ported Flex/TIFF efficiency changes to 4.1 branch.
(edit) @5771   10 years melissa Ported r5770 to 4.1 branch.
(edit) @5759   10 years melissa Prevent an NPE if the EXIF IFD is invalid.
(edit) @5757   10 years melissa Tweaks to allow TIFFs with missing IFD pointers to be read.
(edit) @5730   10 years melissa Ignore image chunks that have a length of 0.
(edit) @5727   10 years melissa Updated documentation and what's new for today's release.
(edit) @5720   10 years melissa * Added a bunch of status messages to FlexReader. * Tweaked …
(edit) @5717   10 years melissa Merged r5714 into 4.1 branch.
(edit) @5716   10 years melissa * Updated metadata support documentation. * Updated branch version number …
(edit) @5715   10 years melissa Added 'domainlist' command for printing a list of supported domains.
(edit) @5712   10 years melissa * Merged r5706, r5636, and r5654 into 4.1 branch. * Fixed SizeC mismatch …
(edit) @5711   10 years melissa Bug fixes.
(edit) @5709   10 years melissa * Various bug fixes. * Reduced amount of memory required by ZeissZVIReader …
(edit) @5705   10 years melissa Allow Deltavision files to have non-standard extensions.
(edit) @5704   10 years melissa Removed InCell ROI parsing; closes #437.
(edit) @5703   10 years melissa Fixed LUT parsing for multi-file BioRad datasets.
(edit) @5696   10 years melissa Always ignore the file pattern if fileGroupOption(id) == MUST_GROUP.
(edit) @5695   10 years melissa Fixed AIOOB.
(edit) @5694   10 years melissa Prevent StringIndexOutOfBoundsException when parsing Objective data. …
(edit) @5693   10 years melissa * Throw a more informative exception if an invalid file pattern is passed …
(edit) @5691   10 years melissa One more Filter linkage fix.
(edit) @5690   10 years melissa Populate Shape.StrokeColor.
(edit) @5689   10 years callan Merging r5688 from Trunk
(edit) @5687   10 years melissa Fixed linkages for simultaneous scan files.
(edit) @5686   10 years melissa Tiling fixes.
(edit) @5685   10 years melissa MIAS masks are now packed bit masks.
(edit) @5684   10 years callan Merging r5628 and r5651 from Trunk
(edit) @5681   10 years melissa Ensure that the XML string starts with '<'.
(edit) @5680   10 years melissa Prevent StringIndexOutOfBoundsException when parsing key/value pairs.
(edit) @5679   10 years melissa Tweaked tiled image handling.
(edit) @5678   10 years melissa Place timestamps in original metadata hashtable and populate …
(edit) @5677   10 years melissa Prevent measurement files from being duplicated in the used file list.
(edit) @5676   10 years melissa Tweaked pixel offset calculation.
(edit) @5675   10 years melissa Check that TIFF comment has not been truncated.
(edit) @5664   10 years melissa Several minor bugfixes. Closes #430.
(edit) @5661   10 years melissa Override fileGroupOption(String) and populate WellSample.ImageRef.
(edit) @5657   10 years melissa Merged r5655 and r5656 into 4.1 branch.
(edit) @5653   10 years melissa Merged r5635 and r5652 into 4.1 branch.
(edit) @5625   10 years melissa * Tweaked ordering of used file list. * Updated metadata support docs. * …
(edit) @5621   10 years melissa Fixed offset calculation.
(edit) @5620   10 years melissa Fixed parsing of Metamorph ND files with 0 wavelengths and/or timepoints.
(edit) @5619   10 years melissa Fixed: * ZVI XML validation problems * LSM 4+ GB problems (modified from …
(edit) @5618   10 years melissa Fixed IPLab Mac type checking.
(edit) @5617   10 years melissa Fixed compile errors, for real this time.
(edit) @5616   10 years melissa Added missing files; should fix compile errors.
(edit) @5615   10 years melissa Syncing 4.1 branch with r5614.
(edit) @5614   10 years melissa Fixed several bugs exposed during testing.
(edit) @5612   10 years curtis Backport r5611 OME-TIFF writer fixes to 4.1 branch.
(edit) @5610   10 years melissa Added appendServerMap(String, String) method to FlexReader.
(edit) @5607   10 years melissa A few OME-XML validation fixes.
(edit) @5601   10 years melissa Fixed a few bugs, including Bio-Rad naming.
(edit) @5599   10 years melissa FlexReader.mapServer now ignores servers that don't exist (instead of …
(edit) @5597   10 years melissa Insert blank planes if one of the constituent files is not found; this is …
(edit) @5596   10 years melissa Fixed IPLab/IPLab Mac type detection and Deltavision Objective IDs.
(edit) @5595   10 years melissa Added support for double pixel type to FITS reader.
(edit) @5594   10 years melissa Updated to r5593, omitting r5590.
(copy) @5589   10 years melissa Branched for 4.1 release.
copied from trunk:
(edit) @5588   10 years curtis * Better separation of Jace and bf-cpp components. * Draft of …
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