source: branches/4.2/components/bio-formats/src/loci/formats/in @ 6663

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Diff Rev Age Author Log Message
(edit) @6663   10 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
(edit) @6635   10 years melissa Be more thorough when searching for the .dv file that matches a .log or …
(edit) @6626   10 years curtis Backport r6625 to 4.2 branch.
(edit) @6611   10 years curtis Backport r6609,r6610 to 4.2 branch.
(edit) @6608   10 years curtis Backport r6606,r6607 to 4.2 branch.
(edit) @6605   10 years curtis Backport r6603,6604 to 4.2 branch.
(edit) @6599   10 years curtis Backport r6598 to 4.2 branch.
(edit) @6597   10 years melissa Better XZ/XT scan detection; see  omero:2321.
(edit) @6596   10 years curtis Backport r6595 to 4.2 branch.
(edit) @6593   10 years curtis Backport r6592 to 4.2 branch.
(edit) @6589   10 years curtis Backport r6588 to 4.2 branch.
(edit) @6586   10 years curtis Backport r6585 to 4.2 branch.
(edit) @6584   10 years curtis Backport recent bugfixes to 4.2 branch.
(edit) @6573   10 years melissa Fixed GZIP pixel data detection for ICS files.
(edit) @6567   10 years melissa Fixed how pixels files are found, so that having multiple *.vws files in …
(edit) @6566   10 years melissa Tweaked pixel block detection to work with Slidebook 5.0.0.5 files.
(edit) @6564   10 years curtis Backport r6563 to 4.2 branch.
(edit) @6562   10 years curtis Backport indexed color fix to 4.2 branch.
(edit) @6555   10 years curtis Merge color mode progress to 4.2 branch.
(edit) @6553   10 years melissa Fixed a handful of core metadata and pixels offset bugs in Visitech …
(edit) @6534   10 years melissa Fixed a few issues with 16-bit LUTs.
(edit) @6527   10 years melissa Tweaked Metamorph reader's type detection so that TIFFs are not …
(edit) @6526   10 years melissa Fixed Detector indices so that Detectors are properly populated and linked …
(edit) @6515   10 years melissa Allow Metamorph reader to pick up TIFF files.
(edit) @6507   10 years melissa Couple of minor reader fixes.
(edit) @6503   10 years melissa Fixed XZ/XT scans to display as they do in Olympus' software.
(edit) @6501   10 years melissa Tweaked isThisType to only pick up valid TIFF files that are in the same …
(edit) @6495   10 years melissa Updated email address.
(edit) @6494   10 years melissa Added support for multi-file OME-TIFF export. Closes #485.
(edit) @6490   10 years melissa Added TextReader to 4.2 branch.
(edit) @6489   10 years melissa Fixed Nikon tag parsing.
(edit) @6487   10 years melissa Minor fixes to make metadata level tests pass.
(edit) @6486   10 years melissa Make sure that CoreMetadata.indexed is set correctly, regardless of the …
(edit) @6484   10 years melissa Updated Channel -> Laser linkage rule in accordance with r6076.
(edit) @6483   10 years melissa Populate Laser.Model, if present. See  omero:2475.
(edit) @6477   10 years curtis Backport Bio-Formats and Importer bugfixes from trunk.
(edit) @6465   10 years melissa Added some debugging statements so that missing TIFF files are reported. …
(edit) @6461   10 years melissa Fixed well ordering bug, courtesy of Rubén Muñoz.
(edit) @6459   10 years melissa Synced up export/MetadataConverter fixes between trunk and 4.2. OME-TIFF …
(edit) @6457   10 years melissa Moved ome.xml.r201004.* to ome.xml.model.*.
(edit) @6430   10 years melissa * Updated OMEXMLMetadataImpl based on  ome-xml:r618. * Fixed a bunch of …
(edit) @6426   10 years melissa Fixed various metadata population bugs in the FV1000 reader. See …
(edit) @6420   10 years curtis Merge ChannelFiller and FakeReader bugfixes to 4.2.
(edit) @6416   10 years melissa Fixed physical size Z scaling.
(edit) @6415   10 years callan Merging r6413,r6414 from Trunk
(edit) @6409   10 years melissa Several fixes to Leica LEI, ND2, and Perkin Elmer readers.
(edit) @6406   10 years melissa Updated several TIFF-based readers to populate Image.Description more …
(edit) @6405   10 years melissa Fixed Detector/DetectorSettings population to correspond to what the …
(edit) @6404   10 years melissa Trim the image name before placing it in the original metadata hashtable. …
(edit) @6400   10 years callan Merging r6398,r6399 from Trunk
(edit) @6395   10 years melissa Read tags into a byte array, so that non-String tags are preserved. See …
(edit) @6392   10 years melissa Fixed LUT ordering bug. See  omero:2438.
(edit) @6389   10 years melissa Prevent each EmissionFilterRef from being populated multiple times.
(edit) @6388   10 years melissa Fixed a bunch of Leica LIF metadata population bugs.
(edit) @6381   10 years melissa Fixed bug in file renaming logic.
(edit) @6378   10 years melissa Tweaked MetamorphReader.isThisType so that Prairie TIFFs are not picked …
(edit) @6376   10 years melissa Updated remaining readers to use enumeration handlers.
(edit) @6375   10 years callan Merging r6272,r6373,r6374 from Trunk
(edit) @6370   10 years melissa Updated Deltavision and Flex readers to use …
(edit) @6369   10 years melissa Fixed a few SimplePCI dimension bugs.
(edit) @6368   10 years melissa A few more LSM-related fixes.
(edit) @6367   10 years melissa Prevent StringIndexOutOfBoundsException.
(edit) @6364   10 years callan Merging r6359,r6360,r6362,r6263 from Trunk into 4.2 branch.
(edit) @6361   10 years melissa Fixed several TIFF, Zeiss LSM and Zeiss ZVI bugs exposed during testing.
(edit) @6358   10 years melissa Added missing implementations of isSingleFile(String), …
(edit) @6357   10 years melissa Ported r6356 to 4.2 branch.
(edit) @6354   10 years melissa Prevent NumberFormatException from being thrown when parsing the number of …
(edit) @6353   10 years melissa Call MetadataTools.populatePixels(...) after all of the CoreMetadata …
(edit) @6352   10 years melissa Fixed Well -> WellSample linkage. See  omero:2406.
(edit) @6349   10 years melissa Fixed various bugs exposed by test suite.
(edit) @6337   10 years melissa Fixed LightPath and Image population to prevent AIOOB exceptions. See …
(edit) @6336   10 years melissa Fixed Image -> ROI link. See  omero:2381.
(edit) @6335   10 years melissa Moved SizeT population to prevent it from being 0. See  omero:2377.
(edit) @6334   10 years melissa * Prevent PICT reader from reporting width or height less than 0. * Fixd …
(edit) @6333   10 years melissa * Removed hopefully obsolete hack from RandomAccessInputStream.findString. …
(edit) @6332   10 years melissa Fixed ROI transformation population, see  omero:2373.
(copy) @6330   10 years melissa Created 4.2 branch.
copied from trunk/components/bio-formats/src/loci/formats/in:
(edit) @6329   10 years melissa Fixed a couple of bugs exposed by the test suite.
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