

@7565

9 years 
hinerm 
Backport r7564 to 4.2 branch.



@7563

9 years 
hinerm 
Backport r7562 to 4.2 branch.



@7556

9 years 
hinerm 
Added the java class BioFormatsExtensionPrinter to the svn repository. …



@7555

9 years 
hinerm 
Added a new java class to BFCPP  BioFormatsExtensionPrinter  to …



@7538

9 years 
melissa 
Set 'falseColor' to true, so that lookup tables are not improperly …



@7530

9 years 
hinerm 
Update bfcpp proxy list to match latest Java source files.



@7529

9 years 
hinerm 
Backport latest bfitk to 4.2 branch.



@7508

9 years 
melissa 
Fixed NPE.



@7507

9 years 
melissa 
Backported changes to Openlab reader for importing HCS data.



@7503

9 years 
curtis 
Backport r7494,r7496 bugfixes to 4.2 branch.



@7500

9 years 
melissa 
Search more thoroughly for image descriptions.
Image descriptions are no …



@7499

9 years 
melissa 
Fixed compile error in r7498.



@7498

9 years 
melissa 
Backported ScreenReader to 4.2.



@7488

9 years 
melissa 
Sanitize OMEXML before attempting to create a MetadataStore.



@7484

9 years 
melissa 
Various fixes to allow retrieval of pixel data from truncated TIFFs.



@7352

9 years 
melissa 
Restored getFirst(), getLast(), and getStep() as deprecated methods.



@7334

9 years 
melissa 
Updated what's new for today's release.



@7317

9 years 
melissa 
Make image names more easily identifiable in the original metadata.



@7316

9 years 
melissa 
Return a blank plane if a TIFF file is missing, just like we do with many …



@7287

9 years 
melissa 
Parse some more (undocumented) metadata from STK files, including channel …



@7280

9 years 
melissa 
Close readers left open by the openImage/openSubImage macro functions.



@7279

9 years 
melissa 
Merged Autoscale help text changes into 4.2: r7276, r7277, and r7278.



@7275

9 years 
melissa 
Updated metadata support documentation.



@7273

9 years 
melissa 
Updated version numbers to 4.2.2.



@7272

9 years 
melissa 
Merged r7256 into 4.2.



@7271

9 years 
melissa 
Merged r7255 and r7257 into 4.2.



@7270

9 years 
melissa 
Merged r7253 into 4.2.



@7269

9 years 
melissa 
Merged FV1000 reader changes into 4.2: r7249 and r7250.



@7268

9 years 
melissa 
Merged r7245 into 4.2.



@7267

9 years 
melissa 
Merged r7239 into 4.2.



@7266

9 years 
melissa 
Merged BufferedImage unpacking fixes into 4.2: r7236 and r7254.



@7265

9 years 
melissa 
Merged r7228 to 4.2.



@7264

9 years 
melissa 
Merged r7225 into 4.2.



@7263

9 years 
melissa 
Merged file handle fix and tests into 4.2: r7226, r7230, and r7231.



@7262

9 years 
melissa 
Merged ImageJ plugin changes into 4.2: r7210, r7238, and r7258.



@7261

9 years 
melissa 
Merged r7220 into 4.2.



@7260

9 years 
melissa 
* Skip over empty .lsm files instead of throwing an EOFException.
* …



@7259

9 years 
melissa 
Improved stage position parsing.



@7252

9 years 
melissa 
Fixed dragging and dropping so that an "Open" dialog is not shown and …



@7251

9 years 
melissa 
Catch IOException when parsing ROIs, so that we can still read the file if …



@7248

9 years 
callan 
Merging r7247 from Trunk.



@7246

9 years 
melissa 
Fixed channel name population.



@7244

9 years 
melissa 
Fixed dimension adjustment for spool files.



@7243

9 years 
callan 
Merging r7240,r7241 and r7242 from Trunk.



@7237

9 years 
melissa 
Preserve physical pixel sizes when writing vanilla TIFF files.



@7235

9 years 
melissa 
Override get*BitLookupTable() methods so that files with a different LUT …



@7229

9 years 
melissa 
Prevent NPEs if detector metadata is missing.



@7227

9 years 
melissa 
Use the sum of all position values stored for a particular position …



@7224

9 years 
melissa 
Fixed pixel offset bug.



@7223

9 years 
melissa 
Prevent the 'open' option from being recorded twice. Closes #596.
This …



@7222

9 years 
melissa 
Preserve custom color choices. Closes #586.



@7219

9 years 
melissa 
Merged r7179 into 4.2.



@7218

9 years 
melissa 
Fixed ImageViewer's default metadata population; closes #525.



@7211

9 years 
melissa 
Fixed FileFilter construction method so that it unwraps WriterWrappers. …



@7208

9 years 
melissa 
Backported r7207 to 4.2.



@7184

9 years 
melissa 
Updated version numbers to "4.2.1".



@7183

9 years 
melissa 
Fixed a couple of bugs in ImageConverter.



@7182

9 years 
melissa 
Updated what's new for today's release.



@7178

9 years 
melissa 
Don't correct the channel count in the case of RGB images.



@7175

9 years 
melissa 
Changed omeio component back to using Java 1.5.



@7174

9 years 
melissa 
* Updated stylesheets to omexml:r692.
* Added test for Channel.Color.



@7158

9 years 
melissa 
Fixes for truncated .dv files from QA #2988 and #2989.



@7157

9 years 
melissa 
Remove any extra channels from OMETIFF files. See omero:#3250, QA #2973.



@7156

9 years 
melissa 
Hackish fix for potential IndexOutOfBoundsException; the real fix should …



@7155

9 years 
melissa 
Fix for overwriting TIFF planes.



@7154

9 years 
melissa 
Fixed conversion of LaserMedium attributes with value "Unknown".



@7153

9 years 
melissa 
Only populate LightPath references if the LSIDs are not null.



@7152

9 years 
melissa 
Allow .rec extension for MRC files. isThisType(RandomAccessInputStream) …



@7151

9 years 
melissa 
Updated showinf help text.



@7150

9 years 
melissa 
Updated C++ headers.



@7149

9 years 
melissa 
A bunch of little export fixes.



@7148

9 years 
melissa 
A few fixes for writing planes nonsequentially.



@7146

9 years 
melissa 
Added toplevel compile target.



@7145

9 years 
melissa 
* Fixed multiseries OMEXML export.
* Fixed multiseries OMETIFF export. …



@7144

9 years 
melissa 
Finally fixed ND2 field index bug.



@7143

9 years 
melissa 
Fixed a handful of NPEs, AIOOBs, and leaking file handles.



@7142

9 years 
melissa 
Fixed a bug that prevented ROIs from being displayed.



@7141

9 years 
melissa 
* Backported r6227 to 4.1.
* Fixed a subtle bug in calculating the pixel …



@7140

9 years 
melissa 
Fixed an NPE and a few plane indexing bugs.



@7137

9 years 
melissa 
Fixed timestamp indices, see omero:#3121.



@7129

9 years 
melissa 
Fixed stage position indices.



@7128

9 years 
melissa 
Fixed a handful of Javadoc errors.



@7127

9 years 
melissa 
A few more fixes for small bugs exposed during testing.



@7126

9 years 
melissa 
Reversed usage of OMETiffReader's getMetadataStoreForDisplay() and …



@7125

9 years 
melissa 
Fixed a handful of little bugs exposed during testing.



@7124

9 years 
melissa 
Fixed scanline padding and various metadata parsing bugs.



@7123

9 years 
melissa 
Fixed autoscaling for sliced stacks.



@7122

9 years 
melissa 
Fixed TIFF file ordering problems.



@7106

9 years 
melissa 
Updated metadata support documentation.



@7104

9 years 
melissa 
Updated version numbers to "4.2.1DEV".



@7103

9 years 
melissa 
Backported r7084 to 4.2.



@7102

9 years 
melissa 
Backported r7055 to 4.2.



@7101

9 years 
melissa 
Backported r7051 to 4.2.



@7100

9 years 
melissa 
Backported r7042 to 4.2.



@7099

9 years 
melissa 
Backported Zeiss LSM stage position changes to 4.2: r7040 and r7043.



@7098

9 years 
melissa 
Backported r7037 to 4.2.



@7097

9 years 
melissa 
Backported file stitching changes to 4.2: r7021, r7022, r7070, r7071, …



@7096

9 years 
melissa 
Backported native component changes to 4.2: r7014, r7035, r7036, r7049, …



@7095

9 years 
melissa 
Backported r7012 and r7013 to 4.2.



@7093

9 years 
melissa 
Various tweaks to file grouping logic, so that datasets can be read even …


