source: branches/cleanup @ 6902

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Diff Rev Age Author Log Message
(edit) @6023   10 years melissa Added a few more TiffSaver tests, and fixed bugs that prevented them from …
(edit) @6021   10 years melissa * Readded lookup table support to TiffWriter. * Fixed a couple of bugs in …
(edit) @6020   10 years melissa Improved TiffSaver functionality and removed …
(edit) @6018   10 years melissa TiffParser.getFirstOffset() no longer assumes that …
(edit) @6015   10 years melissa Added Burleigh reader. See #412.
(edit) @6014   10 years callan #466 Generalized unit tests for parsed TIFF types (grayscale and RGB …
(edit) @6013   10 years melissa Added Quesant reader. See #412.
(edit) @6012   10 years melissa Added basic TIFF pixels read/write tests. See #466.
(edit) @6006   10 years callan #466 Complete coverage of the required IFD entries for a grayscale image.
(edit) @6005   10 years callan #466 Moved common enumeration classes to loci.common.enumeration and added …
(edit) @6004   10 years callan #466 Significantly more thorough grayscale TIFF parser tests. Almost …
(edit) @6003   10 years callan #466 Initial TIFF saver and parser smoke tests
(edit) @6001   10 years melissa Added UBM reader. See #412.
(edit) @5996   10 years melissa Tweaked FEI reader to support Philips .img files. See #412.
(edit) @5993   10 years melissa Added JEOL reader. See #412.
(edit) @5990   10 years melissa Updated differencing/undifferencing logic to be more generic. See #466.
(edit) @5988   10 years melissa Removed null checking from IFD.getIFD*Value methods, as it was rarely …
(edit) @5986   10 years melissa Consolidated value offset/data length writing logic into a single helper …
(edit) @5985   10 years melissa Added TopoMetrix reader. See #412.
(edit) @5984   10 years melissa Added Seiko reader and cleaned up SM Camera reader a bit. See #412.
(edit) @5983   10 years melissa Added SM Camera reader. See #412.
(edit) @5982   10 years melissa Fixed path to stylesheet, so that it can be found by ImageJ.
(edit) @5975   10 years melissa Added reader for WA Technology .wat files. See #412.
(edit) @5974   10 years melissa Fixed how 32-bit AVIs are handled.
(edit) @5972   10 years melissa Added Gatan .dm2 reader and fixed a couple of Gatan .dm3 bugs. See #412.
(edit) @5971   10 years melissa Added missing isThisType(RandomAccessInputStream) implementations to …
(edit) @5970   10 years melissa Consolidated a lot of pixel unpacking logic. See #466.
(edit) @5969   10 years callan #466 Converting PhotoInterp into a Java 1.5+ enum
(edit) @5968   10 years callan #466 Test cases for TiffRational; validates r5967
(edit) @5967   10 years callan #466 TiffRational type safety adjustment
(edit) @5966   10 years callan #466 Cleaned up a couple cases where TreeSet is a useful replacement for …
(edit) @5965   10 years callan Made Nikon codec decompression test a little more thorough.
(edit) @5964   10 years callan #466 Converting IDF types to a Java 1.5+ enum
(edit) @5963   10 years callan Fixed interface / abstract class usage mismatch.
(edit) @5962   10 years callan #466 Made TiffCompression enum instances a little bit more elegant and …
(edit) @5961   10 years callan Fixed a bug where seek() was called on an already closed stream.
(edit) @5958   10 years melissa * Altered IFD retrieval methods in TiffParser to be a little more …
(edit) @5957   10 years callan #466 Converting TiffCompression into a Java 1.5+ enum
(edit) @5956   10 years melissa Removed some unnecessary TIFF parsing methods and cleaned up how BigTIFF …
(edit) @5953   10 years melissa Updated calls to TiffTools to use TiffParser instead, and removed …
(edit) @5952   10 years callan Test case for lossless JPEG2000 compression.
(edit) @5950   10 years callan Cleaning up un-used import
(edit) @5949   10 years callan #464 Some further POI fork tests with an Excel document
(edit) @5948   10 years melissa Added another MDB service test.
(edit) @5947   10 years melissa Added a few more NetCDF tests.
(edit) @5946   10 years melissa Added a few more OME-XML tests.
(edit) @5945   10 years melissa Fixed packages for OME I/O tests and removed extra TestNG XML file.
(edit) @5944   10 years melissa * Moved OME I/O tests to ome-io component. * Added dependency check to …
(edit) @5943   10 years callan #464 Added LuraWave service * Stub in stubs component for …
(edit) @5942   10 years callan Stubs component; holds stubs of third party classes
(edit) @5941   10 years callan #464 Minimal test cases for POI, OME reader/writer, OME-XML MDB and NetCDF …
(edit) @5940   10 years callan Fixing imports in loci-plugins component
(edit) @5939   10 years callan #464 Re-organizing the JAIIIOService a bit, adding a test case to cover it
(edit) @5938   10 years callan #464 Various cleanup changes: * Normalized all service packages to …
(edit) @5937   10 years callan #464 Removing some usage of ReflectedUniverse where OMEReaderWriterService …
(edit) @5935   10 years callan #464 Implementation of OME reader/writer service (includes test cases)
(edit) @5931   10 years melissa Switched root test target to use overridden test targets in bio-formats …
(edit) @5930   10 years melissa Each component's 'test' target now depends on 'jar'.
(edit) @5929   10 years callan Fixed missing MDB test case
(edit) @5928   10 years callan Adding missing AbstractService
(edit) @5927   10 years callan Adding dependency check test cases to default test target
(edit) @5926   10 years callan #464 Addition of AbstractService and some more aggressive dependency …
(edit) @5925   10 years callan Updating Eclipse project settings for bio-formats and common components.
(edit) @5924   10 years callan Fixing Eclipse classpath.
(edit) @5921   10 years melissa Added service for reading JPEG-2000 data using JAI Image I/O. See #464.
(edit) @5920   10 years melissa Updated ImageViewer to use OME Notes service.
(edit) @5919   10 years melissa * Added service for MDB Tools. See #464. * Added documentation to …
(edit) @5918   10 years callan #464 NetCDFService implemented with relevant readers adjusted
(edit) @5917   10 years callan Fixing classpath and empty dependency package.
(edit) @5916   10 years callan Commiting missing ServiceException
(edit) @5915   10 years callan #464 Add ServiceException and switch OMEXMLService over to its use
(edit) @5913   10 years melissa Added LOCI POI service and fixed several bugs in service-related resource …
(edit) @5912   10 years melissa Added reader for Hamamatsu .his files. See #412.
(edit) @5909   10 years melissa Added reader for VG SAM .dti files. See #412.
(edit) @5908   10 years melissa Added reader for Unisoku files. See #412.
(edit) @5907   10 years melissa Added reader for Oxford Instruments' SPM files. See #412.
(edit) @5906   10 years melissa Added BD Pathway reader, courtesy of Shawn Garbett. Closes #389.
(edit) @5905   10 years melissa Re-added log4j to classpath.
(edit) @5904   10 years melissa Moved dependency version information to scan-deps.pl. Updated …
(edit) @5903   10 years melissa Added provider for ByteArrayHandles constructed from existing byte arrays …
(edit) @5902   10 years melissa Fixed compile errors introduced in r5898.
(edit) @5901   10 years melissa Fixed IMetadata template for bf-ice.
(edit) @5900   10 years callan Updating with MetadataAutgen as of r5899
(edit) @5899   10 years callan Fixing OMEXMLMetadata template.
(edit) @5898   10 years callan #464 OME-XML and OME Notes services "for real" * Moved ServiceFactory and …
(edit) @5897   10 years melissa * Fixed bug that caused ByteArrayHandles constructed from byte arrays to …
(edit) @5896   10 years melissa Upgraded many of the dependency JARs, and removed a few that are no longer …
(edit) @5894   10 years callan #464 A version of dependency injection for review
(edit) @5877   10 years callan #463 Cleanup of locations of inefficient legacy DataTools usage * With …
(edit) @5876   10 years callan #463 ByteArrayHandle changes to use direct buffer manipulations * Large …
(edit) @5875   10 years callan * Adding ByteBuffer read/write capabilities to the RA streams * Removed a …
(edit) @5874   10 years callan * Implemented NIOFileHandle ByteBuffer read/write operations. * Adjusted …
(edit) @5870   10 years melissa Added tests for reading to and writing from a ByteBuffer.
(edit) @5869   10 years melissa Added methods for reading to and writing from a ByteBuffer.
(edit) @5867   10 years melissa Ported r5857 to cleanup, with appropriate logging changes.
(edit) @5866   10 years callan #463 Clean up DataTools imports
(edit) @5865   10 years callan #463 Clean up now unused thread local.
(edit) @5864   10 years callan #463 DataTools initial cleanup; removing now unused read/write methods
(edit) @5863   10 years callan #463 Complete port of AWTiffTools away from DataTools
(edit) @5862   10 years callan #463 Ported TIFF saver to use RandomAccessOutputStream for writeIFDValue
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