source: branches @ 7164

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Diff Rev Age Author Log Message
(edit) @7164   10 years aivar Comment added.
(edit) @7163   10 years aivar Convert lambda to tau.
(edit) @7162   10 years aivar Convert lambda to tau.
(edit) @7161   10 years aivar Added get/set X/Y, needed to save fit results.
(edit) @7160   10 years aivar Was using lambda, now use tau.
(edit) @7159   10 years aivar Added get/set X/Y, these are needed to save the fit results.
(edit) @7158   10 years melissa Fixes for truncated .dv files from QA #2988 and #2989.
(edit) @7157   10 years melissa Remove any extra channels from OME-TIFF files. See  omero:#3250, QA #2973.
(edit) @7156   10 years melissa Hackish fix for potential IndexOutOfBoundsException; the real fix should …
(edit) @7155   10 years melissa Fix for overwriting TIFF planes.
(edit) @7154   10 years melissa Fixed conversion of LaserMedium attributes with value "Unknown".
(edit) @7153   10 years melissa Only populate LightPath references if the LSIDs are not null.
(edit) @7152   10 years melissa Allow .rec extension for MRC files. isThisType(RandomAccessInputStream) …
(edit) @7151   10 years melissa Updated showinf help text.
(edit) @7150   10 years melissa Updated C++ headers.
(edit) @7149   10 years melissa A bunch of little export fixes.
(edit) @7148   10 years melissa A few fixes for writing planes non-sequentially.
(edit) @7146   10 years melissa Added top-level compile target.
(edit) @7145   10 years melissa * Fixed multi-series OME-XML export. * Fixed multi-series OME-TIFF export. …
(edit) @7144   10 years melissa Finally fixed ND2 field index bug.
(edit) @7143   10 years melissa Fixed a handful of NPEs, AIOOBs, and leaking file handles.
(edit) @7142   10 years melissa Fixed a bug that prevented ROIs from being displayed.
(edit) @7141   10 years melissa * Backported r6227 to 4.1. * Fixed a subtle bug in calculating the pixel …
(edit) @7140   10 years melissa Fixed an NPE and a few plane indexing bugs.
(edit) @7139   10 years aivar Select SLIM Curve LMA as default.
(edit) @7138   10 years aivar Select SLIM Curve LMA as default.
(edit) @7137   10 years melissa Fixed timestamp indices, see  omero:#3121.
(edit) @7136   10 years aivar Init start bin.
(edit) @7135   10 years aivar Added 'quit' method to make the UI go away when the user cancels a fit.
(edit) @7134   10 years aivar Added 'quit' method to make the UI go away when the user cancels a fit.
(edit) @7133   10 years aivar Added image stack support for multiple channels. Support for multiple …
(edit) @7132   10 years aivar Add multiple exponential support (doesn't seem to actually work though).
(edit) @7131   10 years aivar Better colorization.
(edit) @7130   10 years aivar A cheap variant of my ThreeColorColorize. Still emphasizes green (my …
(edit) @7129   10 years melissa Fixed stage position indices.
(edit) @7128   10 years melissa Fixed a handful of Javadoc errors.
(edit) @7127   10 years melissa A few more fixes for small bugs exposed during testing.
(edit) @7126   10 years melissa Reversed usage of OMETiffReader's getMetadataStoreForDisplay() and …
(edit) @7125   10 years melissa Fixed a handful of little bugs exposed during testing.
(edit) @7124   10 years melissa Fixed scanline padding and various metadata parsing bugs.
(edit) @7123   10 years melissa Fixed autoscaling for sliced stacks.
(edit) @7122   10 years melissa Fixed TIFF file ordering problems.
(edit) @7121   10 years aivar Default to "EACH PIXEL" for better demo.
(edit) @7120   10 years aivar Added chiSquare.
(edit) @7119   10 years aivar Added chiSquare.
(edit) @7118   10 years aivar Added chiSquare.
(edit) @7117   10 years aivar Added chiSquare.
(edit) @7116   10 years aivar Tidied up, made all the listeners anonymous inner classes. Added setters …
(edit) @7115   10 years aivar Added quit capability.
(edit) @7114   10 years aivar Added more setters and chiSquare.
(edit) @7113   10 years aivar Removed debugging print statement.
(edit) @7112   10 years aivar Added main loop that does fits based on UI input. Gets and sets …
(edit) @7111   10 years aivar Fleshed out.
(edit) @7110   10 years aivar Doesn't extend StartStopListener any more.
(edit) @7109   10 years aivar New method to set listener.
(edit) @7108   10 years aivar New UI; not working.
(edit) @7107   10 years aivar Cleanup, rewrote start/stop bars completely.
(edit) @7106   10 years melissa Updated metadata support documentation.
(edit) @7104   10 years melissa Updated version numbers to "4.2.1-DEV".
(edit) @7103   10 years melissa Backported r7084 to 4.2.
(edit) @7102   10 years melissa Backported r7055 to 4.2.
(edit) @7101   10 years melissa Backported r7051 to 4.2.
(edit) @7100   10 years melissa Backported r7042 to 4.2.
(edit) @7099   10 years melissa Backported Zeiss LSM stage position changes to 4.2: r7040 and r7043.
(edit) @7098   10 years melissa Backported r7037 to 4.2.
(edit) @7097   10 years melissa Backported file stitching changes to 4.2: r7021, r7022, r7070, r7071, …
(edit) @7096   10 years melissa Backported native component changes to 4.2: r7014, r7035, r7036, r7049, …
(edit) @7095   10 years melissa Backported r7012 and r7013 to 4.2.
(edit) @7094   10 years rlentz Converted to Maven Project for ease of download
(edit) @7093   10 years melissa Various tweaks to file grouping logic, so that datasets can be read even …
(edit) @7092   10 years melissa Only populate Objective.NominalMagnification if the magnification is …
(edit) @7091   10 years melissa * Attempt to gracefully handle truncated Deltavision files. See QA #2892, …
(edit) @7090   10 years melissa Override get*LookupTable() so that LUTs are returned where appropriate. …
(edit) @7089   10 years melissa Skip over ROI files that do not exist, instead of throwing an exception.
(edit) @7088   10 years aivar Default to 'each pixel' fit.
(edit) @7087   10 years aivar Commented out excessive printouts that slow down the fit.
(edit) @7085   10 years melissa Close unused file handles.
(edit) @7083   10 years melissa Added better type detection to the text reader, see  omero:#2740.
(edit) @7082   10 years aivar Removed imagej/ij/1.43, added imagej/ij/2.0-SNAPSHOT, …
(edit) @7081   10 years aivar First plugins config file.
(edit) @7080   10 years aivar Borrowed from SLIMPlotter.
(edit) @7079   10 years aivar Many changes to SLIMProcessor, mostly for automatic plugin.
(edit) @7078   10 years aivar New version of SLIM_Plugin, moved out of the default package.
(edit) @7077   10 years aivar Automatically executed version of SLIM Plugin.
(edit) @7074   10 years melissa Parse stage positions from Fluoview/Andor TIFFs.
(edit) @7073   10 years melissa Populate physical sizes for all series.
(edit) @7072   10 years melissa Using bfconvert with an existing output file will now cause that output …
(edit) @7069   10 years curtis Minor tweaks.
(edit) @7068   10 years melissa Finally finished fixing original metadata population, closes #564. We now …
(edit) @7067   10 years melissa Backported r7038 to 4.2.
(edit) @7066   10 years melissa Allow a different stage position for each plane.
(edit) @7065   10 years curtis Fix compile error with Java 1.5.
(edit) @7064   10 years curtis Add bf-imglib dependency to slim-plugin POM.
(edit) @7063   10 years melissa Prevent Bio-Rad reader from attempting to initialize ._*.pic files. See …
(edit) @7062   10 years aivar Fixed build problem.
(edit) @7061   10 years aivar Extensive changes: Refactored into packages. New interface.
(edit) @7060   10 years aivar Extensive changes: Refactored into packages. New interface.
(edit) @7059   10 years aivar Extensive changes: Refactored into packages. New interface.
(edit) @7058   10 years aivar Extensive changes: Refactored into packages. New interface.
(edit) @7057   10 years melissa Fixed PICT sub-image reading, see  omero:#3037.
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