source: branches @ 6902

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Diff Rev Age Author Log Message
(edit) @6902   9 years curtis Add additional projects to umbrella.
(edit) @6901   9 years curtis Tweak some licenses.
(edit) @6900   9 years curtis POM for Jama.
(edit) @6899   9 years curtis New curve fitter package, migrated from …
(edit) @6898   9 years curtis New curve fitter package, migrated from …
(edit) @6897   9 years curtis Update SLIM Plotter to work with jaolho LMA v1.3.
(edit) @6895   9 years curtis Maven version of loci-checks.
(edit) @6894   9 years curtis Fix ome-editor author.
(edit) @6893   9 years curtis Maven version of ome-editor.
(edit) @6892   9 years curtis Maven version of ome-notes (but still doesn't compile).
(edit) @6887   9 years melissa Backported r6839, r6840, and r6841 to 4.2.
(edit) @6885   9 years curtis Maven version of legacy Multi-LUT application.
(edit) @6884   9 years curtis Maven version of jvmlink project.
(edit) @6883   9 years curtis Update repository links to match new dev server.
(edit) @6870   9 years melissa Added JUnit JAR to build classpath, and made a few minor tweaks to test …
(edit) @6868   9 years melissa Merged trunk r6867 into junit-test-suite.
(edit) @6867   9 years melissa Migrated data-driven writer tests to JUnit. See #498.
(edit) @6865   9 years melissa Skip tests if IFormatReader.setId(String) failed. Closes #539.
(edit) @6856   9 years melissa Fixed sub-image reading for SimplePCI files that contain embedded TIFFs.
(edit) @6855   9 years melissa Backported r6068 to 4.1.
(edit) @6851   9 years melissa * Added more informative logging. * Make sure that tests fail if files …
(edit) @6850   9 years melissa Initial version of data-driven JUnit tests, see #498. 'ant …
(edit) @6846   9 years melissa Added branch for migrating the data-driven tests to JUnit; see #498.
(edit) @6843   9 years melissa Removed check that prevented multi-file OME-TIFF export from working.
(edit) @6837   9 years curtis Update bf-cpp invocation script: * Add loci_plugins library to the mix. …
(edit) @6836   9 years melissa Fixed Image indexed passed to …
(edit) @6834   9 years melissa Moved MetadataStore calls that depend on MetadataTools.populatePixels(...) …
(edit) @6833   9 years curtis Add latest Maven projects to the umbrella.
(edit) @6832   9 years curtis Maven version of ome-plugins project.
(edit) @6831   9 years curtis Add missing flow-cytometry pom.xml.
(edit) @6830   9 years curtis Maven version of flow-cytometry project.
(edit) @6829   9 years curtis Fix VisBio developer list.
(edit) @6828   9 years curtis Migrate miscellaneous utilities to Maven.
(edit) @6827   9 years curtis Convert slim-plotter to Maven project structure.
(edit) @6826   9 years melissa Backported dimension detection changes.
(edit) @6825   9 years curtis Add new projects to umbrella, and ignore target folders.
(edit) @6824   9 years curtis Progress on Mavenization, including ome-io and visbio projects.
(edit) @6822   9 years melissa Prevent extra (Logical)Channel objects from being populated.
(edit) @6821   9 years curtis Add temporary workaround for Jace bug when class names have underscores.
(edit) @6820   9 years curtis Add boot classpath to AutoProxy classpath.
(edit) @6818   9 years curtis Set main class appropriately in deps jar.
(edit) @6817   9 years curtis Fixed assembly for jar2lib-*-deps.jar.
(edit) @6815   9 years curtis Add assembly for creating jar2lib JAR with dependencies. Still buggy.
(edit) @6813   9 years curtis Temporary place to house bf-cpp-specific Jar2Lib files.
(edit) @6812   9 years melissa Reverse the order of the rows if a negative height was stored in the file. …
(edit) @6811   9 years curtis Better layout for static resources.
(edit) @6809   9 years curtis Working version of Jar2Lib.
(edit) @6808   9 years melissa If a negative width or height is stored, use the absolute value instead …
(edit) @6806   9 years curtis Initial version of Jar2Lib implementation.
(edit) @6803   9 years melissa Backported r6802 to 4.1 branch.
(edit) @6802   9 years melissa * Ignore missing L2D scans, instead of throwing an exception. * More …
(edit) @6800   9 years melissa Remove invalid characters from strings that will later be parsed into …
(edit) @6795   9 years curtis Backport r6792 to 4.2 branch.
(edit) @6794   9 years curtis Backport r6789 to 4.2 branch.
(edit) @6777   9 years curtis Fix problem with ij.jar dependency resolution.
(edit) @6776   9 years curtis First cut at Maven-based build system and directory layout for LOCI …
(edit) @6775   9 years curtis Experimental branch for Maven-based builds.
(edit) @6767   9 years melissa Fixed a couple of silly Photoshop bugs.
(edit) @6765   9 years melissa Only populate Objective.NominalMagnification if the magnification stored …
(edit) @6754   9 years melissa Fixed BGR correction when opening sub-images. See QA #2583.
(edit) @6753   9 years melissa Fixed saveBytes and savePlane implementations to use the correct image …
(edit) @6744   9 years melissa Force buffer reallocation if the previously allocated buffer is too small.
(edit) @6730   9 years melissa Merged r6729 into 4.2 branch.
(edit) @6710   9 years melissa * Fixed how ICS files with > 4 channels are read. * Fixed Channel …
(edit) @6707   9 years melissa Fixed problems with exporting multi-channel data.
(edit) @6706   9 years melissa Tweaked isThisType to automatically return false if the TIFF comment is an …
(edit) @6705   9 years melissa Fixed bytes per pixel calculation for RGB data.
(edit) @6699   9 years melissa Fixed pixel data offset.
(edit) @6694   9 years melissa Adjust SizeC internally when writing RGB OME-TIFF files. Closes #513.
(edit) @6693   9 years melissa Fixed ArrayIndexOutOfBoundsException when opening sub-images from 16- and …
(edit) @6691   9 years melissa Backported r6689 to 4.2 branch.
(edit) @6687   9 years melissa Fixed channel data is parsed from Leica LIF files that have had one or …
(edit) @6684   9 years melissa Updated what's new and switch trunk component version numbers to 5.0-DEV.
(edit) @6683   9 years curtis Backport r6682 to 4.2 branch.
(edit) @6681   9 years melissa Only populate Objective.NominalMagnification if the magnification is …
(edit) @6680   9 years curtis Backport r6679 to 4.2 branch.
(edit) @6678   9 years melissa Updated component version numbers in 4.2 branch.
(edit) @6677   9 years curtis Backport r6672,r6673,r6676 to 4.2 branch.
(edit) @6674   9 years melissa Fixed how Images are removed from a MetadataStore when exporting one …
(edit) @6669   9 years curtis Backport recent LOCI plugins progress to 4.2 branch.
(edit) @6667   9 years melissa * Updated undeclared namespace stripping logic to look for namespaces in …
(edit) @6666   9 years melissa Catch NullPointerException when attempting to parse OME-XML comments.
(edit) @6665   9 years melissa Only overwrite the dimensions if the new values are sane.
(edit) @6664   9 years melissa OMETiffReader.isThisType now checks whether or not the OME-XML block can …
(edit) @6663   9 years melissa Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
(edit) @6635   9 years melissa Be more thorough when searching for the .dv file that matches a .log or …
(edit) @6631   9 years melissa Removed obsolete OME-XML model objects.
(edit) @6627   9 years melissa Switched TiffParser logging from 'debug' to 'trace'; see #512.
(edit) @6626   9 years curtis Backport r6625 to 4.2 branch.
(edit) @6615   9 years dscho Avoid "prefix <...> not bound" error when transforming XML When …
(edit) @6614   9 years dscho Fix OME-XML version discovery Some files (Huygens) have an xmlns:ome …
(edit) @6613   9 years melissa Merged r6602 to 4.2 branch.
(edit) @6611   9 years curtis Backport r6609,r6610 to 4.2 branch.
(edit) @6608   9 years curtis Backport r6606,r6607 to 4.2 branch.
(edit) @6605   9 years curtis Backport r6603,6604 to 4.2 branch.
(edit) @6599   9 years curtis Backport r6598 to 4.2 branch.
(edit) @6597   9 years melissa Better XZ/XT scan detection; see  omero:2321.
(edit) @6596   9 years curtis Backport r6595 to 4.2 branch.
(edit) @6593   9 years curtis Backport r6592 to 4.2 branch.
(edit) @6589   9 years curtis Backport r6588 to 4.2 branch.
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