source: branches @ 6984

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Diff Rev Age Author Log Message
(edit) @6984   9 years curtis Generate Javadocs as part of site generation.
(edit) @6983   9 years melissa Fixed various dimension ordering bugs in new multi-file Improvision TIFF …
(edit) @6981   9 years melissa Only populate a channel's excitation wavelength if the wavelength is …
(edit) @6980   9 years curtis Fix slim-plugin compile errors in Eclipse.
(edit) @6979   9 years curtis Require Java 1.6 for ome-io.
(edit) @6975   9 years melissa One more set of ArrayIndexOutOfBounds fixes for certain LZW-compressed …
(edit) @6972   9 years melissa Only apply LUTs to sliced stacks if the original CompositeImage used the …
(edit) @6971   9 years melissa Updated upgrade check status message to be a bit more clear.
(edit) @6970   9 years melissa Support for multi-file Improvision/Volocity TIFF datasets.
(edit) @6968   9 years melissa Prevent ArrayIndexOutOfBoundsException when decompressing certain …
(edit) @6966   9 years aivar Added SLIMCURVE fit algorithms. Worked on JavaDoc.
(edit) @6964   9 years curtis Move Rick's OpenCL deconvolution project into projects subtree.
(edit) @6958   9 years melissa Fixed error in plane index calculation.
(edit) @6957   9 years curtis Merge native projects with main projects tree.
(edit) @6956   9 years curtis Add SLIM-curve project.
(edit) @6955   9 years curtis Remove obsolete ignore rules.
(edit) @6954   9 years curtis Ignore Eclipse metadata files.
(edit) @6951   9 years melissa Backported r6714, r6716, r6948, and r6949 to 4.2. See #557.
(edit) @6950   9 years curtis Backport r6948,r6949 to 4.2 branch.
(edit) @6947   9 years callan Merging r6715 from Trunk. (See #543)
(edit) @6944   9 years callan Merging r6943 from Trunk. (See #561)
(edit) @6942   9 years aivar Added m_free, describes which parameters are free vs. fixed. Commented out …
(edit) @6941   9 years aivar Added m_free, describes which parameters are free vs. fixed.
(edit) @6940   9 years aivar Removed m_free: This information belongs to the curvefitter instance, not …
(edit) @6939   9 years aivar Handles m_free, which parameters are free vs. fixed. Loads dynamic library …
(edit) @6938   9 years aivar Handles m_free, which parameters are free vs. fixed.
(edit) @6937   9 years curtis Remove obsolete test folder.
(edit) @6936   9 years curtis Fix up license for utils project.
(edit) @6935   9 years curtis Fix typo in ome-notes license link.
(edit) @6934   9 years curtis Fix up license for test-suite project.
(edit) @6933   9 years curtis Fix up license for flow-cytometry project.
(edit) @6932   9 years curtis Fix up license for slim-plugin project.
(edit) @6931   9 years curtis Fix up license for jvmlink project.
(edit) @6930   9 years curtis Fix up license for lwf-stubs project.
(edit) @6929   9 years curtis Fix up license for multi-lut project.
(edit) @6928   9 years curtis Fix up license for loci-checks project.
(edit) @6927   9 years curtis Fix up license for misc-plugins project.
(edit) @6926   9 years curtis Fix up license for jar2lib project.
(edit) @6925   9 years curtis Fix up license for curve-fitter project.
(edit) @6923   9 years callan Fixing infinite loop introduced by merging r6367 from Trunk. (See #560)
(edit) @6922   9 years callan Merging r6367 from Trunk. (See #560)
(edit) @6921   9 years callan A solution for file handles being left hanging around after close() on …
(edit) @6920   9 years callan Merged r6743 and r6872 from Trunk. (See #543)
(edit) @6919   9 years callan Merging r6917 from Trunk.
(edit) @6918   9 years callan Merged r6917 and r6916 from Trunk.
(edit) @6915   9 years curtis Remove obsolete components folder.
(edit) @6914   9 years curtis Initial version of autogen Maven project. Needs cleaning up.
(edit) @6913   9 years curtis Begin migration of autogen project to Maven.
(edit) @6912   9 years curtis Remove Bio-Formats Ice package for now.
(edit) @6911   9 years curtis Miscellaneous small tweaks.
(edit) @6910   9 years callan Merging commits (r6690, r6692, r6735, r6784, r6786) from Trunk with …
(edit) @6909   9 years curtis Remove non-Maven version of test-suite project.
(edit) @6908   9 years curtis Maven version of test-suite project.
(edit) @6907   9 years curtis Tweak Maven repositories list.
(edit) @6906   9 years curtis Maven version of Aivar's standalone ImageJ plugins.
(edit) @6905   9 years curtis Add fiji-lib dependency for slim-plugin; it compiles now.
(edit) @6904   9 years aivar Commented out version 1.0.13 BarRender method to work with version 12 in …
(edit) @6903   9 years curtis Move Bio-Formats command line tools to default Maven scripts path.
(edit) @6902   9 years curtis Add additional projects to umbrella.
(edit) @6901   9 years curtis Tweak some licenses.
(edit) @6900   9 years curtis POM for Jama.
(edit) @6899   9 years curtis New curve fitter package, migrated from …
(edit) @6898   9 years curtis New curve fitter package, migrated from …
(edit) @6897   9 years curtis Update SLIM Plotter to work with jaolho LMA v1.3.
(edit) @6895   9 years curtis Maven version of loci-checks.
(edit) @6894   9 years curtis Fix ome-editor author.
(edit) @6893   9 years curtis Maven version of ome-editor.
(edit) @6892   9 years curtis Maven version of ome-notes (but still doesn't compile).
(edit) @6887   9 years melissa Backported r6839, r6840, and r6841 to 4.2.
(edit) @6885   9 years curtis Maven version of legacy Multi-LUT application.
(edit) @6884   9 years curtis Maven version of jvmlink project.
(edit) @6883   9 years curtis Update repository links to match new dev server.
(edit) @6870   9 years melissa Added JUnit JAR to build classpath, and made a few minor tweaks to test …
(edit) @6868   9 years melissa Merged trunk r6867 into junit-test-suite.
(edit) @6867   9 years melissa Migrated data-driven writer tests to JUnit. See #498.
(edit) @6865   9 years melissa Skip tests if IFormatReader.setId(String) failed. Closes #539.
(edit) @6856   9 years melissa Fixed sub-image reading for SimplePCI files that contain embedded TIFFs.
(edit) @6855   9 years melissa Backported r6068 to 4.1.
(edit) @6851   9 years melissa * Added more informative logging. * Make sure that tests fail if files …
(edit) @6850   9 years melissa Initial version of data-driven JUnit tests, see #498. 'ant …
(edit) @6846   9 years melissa Added branch for migrating the data-driven tests to JUnit; see #498.
(edit) @6843   9 years melissa Removed check that prevented multi-file OME-TIFF export from working.
(edit) @6837   9 years curtis Update bf-cpp invocation script: * Add loci_plugins library to the mix. …
(edit) @6836   9 years melissa Fixed Image indexed passed to …
(edit) @6834   9 years melissa Moved MetadataStore calls that depend on MetadataTools.populatePixels(...) …
(edit) @6833   10 years curtis Add latest Maven projects to the umbrella.
(edit) @6832   10 years curtis Maven version of ome-plugins project.
(edit) @6831   10 years curtis Add missing flow-cytometry pom.xml.
(edit) @6830   10 years curtis Maven version of flow-cytometry project.
(edit) @6829   10 years curtis Fix VisBio developer list.
(edit) @6828   10 years curtis Migrate miscellaneous utilities to Maven.
(edit) @6827   10 years curtis Convert slim-plotter to Maven project structure.
(edit) @6826   10 years melissa Backported dimension detection changes.
(edit) @6825   10 years curtis Add new projects to umbrella, and ignore target folders.
(edit) @6824   10 years curtis Progress on Mavenization, including ome-io and visbio projects.
(edit) @6822   10 years melissa Prevent extra (Logical)Channel objects from being populated.
(edit) @6821   10 years curtis Add temporary workaround for Jace bug when class names have underscores.
(edit) @6820   10 years curtis Add boot classpath to AutoProxy classpath.
(edit) @6818   10 years curtis Set main class appropriately in deps jar.
(edit) @6817   10 years curtis Fixed assembly for jar2lib-*-deps.jar.
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