

@7306

9 years 
aivar 
Minor tweak; removed debugging printout.



@7305

9 years 
aivar 
Used by3x3 and 5x5 binning subplugins. 7x7 anyone?



@7304

9 years 
aivar 
Binning subplugin, sums 5x5 or pixel and 24 neighbors.



@7303

9 years 
aivar 
Binning subplugin, sums 3x3 or pixel and its 8 neighbors.



@7302

9 years 
aivar 
Finds all binning subplugins and builds a list of names to choose.



@7301

9 years 
aivar 
Annotation that designates a binning subplugin.



@7300

9 years 
aivar 
Interface that designated a binning subplugin.



@7299

9 years 
aivar 
Moved fit function & region enums.



@7298

9 years 
aivar 
Moved fit function & region enums.



@7297

9 years 
aivar 
Moved fit function & region enums.



@7296

9 years 
aivar 
Minor tweaks.



@7295

9 years 
aivar 
Moved fit function & region enums.



@7294

9 years 
aivar 
Added binning. Changed parameter order.



@7293

9 years 
aivar 
ImageStack.addSlice method I was calling went away; substituted with a …



@7292

9 years 
aivar 
Changed the parameter order. Tidied up.



@7291

9 years 
aivar 
Changed the parameter order.



@7290

9 years 
aivar 
Added method to get number of components in the fit.



@7289

9 years 
aivar 
Removed methods to get/set chi square. Chi square is now kept along with …



@7288

9 years 
aivar 
Added function to get number of components in the fit.



@7287

9 years 
melissa 
Parse some more (undocumented) metadata from STK files, including channel …



@7280

9 years 
melissa 
Close readers left open by the openImage/openSubImage macro functions.



@7279

9 years 
melissa 
Merged Autoscale help text changes into 4.2: r7276, r7277, and r7278.



@7275

9 years 
melissa 
Updated metadata support documentation.



@7273

9 years 
melissa 
Updated version numbers to 4.2.2.



@7272

9 years 
melissa 
Merged r7256 into 4.2.



@7271

9 years 
melissa 
Merged r7255 and r7257 into 4.2.



@7270

9 years 
melissa 
Merged r7253 into 4.2.



@7269

9 years 
melissa 
Merged FV1000 reader changes into 4.2: r7249 and r7250.



@7268

9 years 
melissa 
Merged r7245 into 4.2.



@7267

9 years 
melissa 
Merged r7239 into 4.2.



@7266

9 years 
melissa 
Merged BufferedImage unpacking fixes into 4.2: r7236 and r7254.



@7265

9 years 
melissa 
Merged r7228 to 4.2.



@7264

9 years 
melissa 
Merged r7225 into 4.2.



@7263

9 years 
melissa 
Merged file handle fix and tests into 4.2: r7226, r7230, and r7231.



@7262

9 years 
melissa 
Merged ImageJ plugin changes into 4.2: r7210, r7238, and r7258.



@7261

9 years 
melissa 
Merged r7220 into 4.2.



@7260

9 years 
melissa 
* Skip over empty .lsm files instead of throwing an EOFException.
* …



@7259

9 years 
melissa 
Improved stage position parsing.



@7252

9 years 
melissa 
Fixed dragging and dropping so that an "Open" dialog is not shown and …



@7251

9 years 
melissa 
Catch IOException when parsing ROIs, so that we can still read the file if …



@7248

9 years 
callan 
Merging r7247 from Trunk.



@7246

9 years 
melissa 
Fixed channel name population.



@7244

9 years 
melissa 
Fixed dimension adjustment for spool files.



@7243

9 years 
callan 
Merging r7240,r7241 and r7242 from Trunk.



@7237

9 years 
melissa 
Preserve physical pixel sizes when writing vanilla TIFF files.



@7235

9 years 
melissa 
Override get*BitLookupTable() methods so that files with a different LUT …



@7233

9 years 
aivar 
Formatting change only.



@7232

9 years 
aivar 
Added dialog to choose what to display, was hardcoded.



@7229

9 years 
melissa 
Prevent NPEs if detector metadata is missing.



@7227

9 years 
melissa 
Use the sum of all position values stored for a particular position …



@7224

9 years 
melissa 
Fixed pixel offset bug.



@7223

9 years 
melissa 
Prevent the 'open' option from being recorded twice. Closes #596.
This …



@7222

9 years 
melissa 
Preserve custom color choices. Closes #586.



@7219

9 years 
melissa 
Merged r7179 into 4.2.



@7218

9 years 
melissa 
Fixed ImageViewer's default metadata population; closes #525.



@7217

9 years 
aivar 
Fixed bug. Now each channel can have it's own unique ranges for …



@7216

9 years 
aivar 
Added logic to calculate nearest two digit values for minimum and maximum. …



@7215

9 years 
aivar 
New abstract base class for multiple color interpolation colorizers.



@7214

9 years 
aivar 
Added new method to generate a color bar. Added javadoc.



@7213

9 years 
aivar 
Added new method to generate a color bar. Added javadoc.



@7212

9 years 
aivar 
Added new method to generate a color bar. Added javadoc.



@7211

9 years 
melissa 
Fixed FileFilter construction method so that it unwraps WriterWrappers. …



@7209

9 years 
aivar 
Display plugin, in progress.



@7208

9 years 
melissa 
Backported r7207 to 4.2.



@7206

9 years 
aivar 
Added analysis plugin. Made gray scale a separate class.



@7205

9 years 
aivar 
Kludged up this class to fix a problem with IJ's StackWindow.



@7204

9 years 
aivar 
Interface that communicates pixel selection by clicking on the gray scale …



@7203

9 years 
aivar 
Made a separate interface to display the gray scale image. Handles …



@7202

9 years 
aivar 
Made a separate class to display the gray scale image. Handles multiple …



@7201

9 years 
aivar 
Tidied up comment.



@7200

9 years 
aivar 
Loads a plugin to analyze fit results, using SezPoz.



@7199

9 years 
aivar 
Annotation for plugins that analyze fit results.



@7198

9 years 
aivar 
Interface for plugins that analyze fit results.



@7197

9 years 
aivar 
A VisAD analysis plugin.



@7196

9 years 
aivar 
Stub of an export to text plugin.



@7195

9 years 
aivar 
Dynamically sets minimum, as well as maximum. TIdied up code & added …



@7194

9 years 
aivar 
Dynamically sets minimum, as well as maximum. TIdied up code & added …



@7193

9 years 
aivar 
Dynamically sets minimum, as well as maximum. TIdied up code & added …



@7192

9 years 
aivar 
Dynamically sets minimum, as well as maximum. TIdied up code & added …



@7191

9 years 
aivar 
Dynamically sets minimum, as well as maximum. TIdied up code & added …



@7190

9 years 
aivar 
Dynamically sets minimum, as well as maximum. TIdied up code & added …



@7189

9 years 
aivar 
Dynamically sets minimum, as well as maximum. TIdied up code & added …



@7188

9 years 
aivar 
Dynamically sets minimum, as well as maximum. TIdied up code & added …



@7187

9 years 
aivar 
Save channel with pixel, as well as x and y.



@7186

9 years 
aivar 
Save channel with pixel, as well as x and y.



@7184

9 years 
melissa 
Updated version numbers to "4.2.1".



@7183

9 years 
melissa 
Fixed a couple of bugs in ImageConverter.



@7182

9 years 
melissa 
Updated what's new for today's release.



@7178

9 years 
melissa 
Don't correct the channel count in the case of RGB images.



@7177

9 years 
rlentz 
Added developer comments



@7176

9 years 
rlentz 
Test Update



@7175

9 years 
melissa 
Changed omeio component back to using Java 1.5.



@7174

9 years 
melissa 
* Updated stylesheets to omexml:r692.
* Added test for Channel.Color.



@7173

9 years 
rlentz 
Demo using EJB components on Glassfish, supporting multilanguage …



@7172

9 years 
rlentz 
Demo using EJB components on Glassfish, supporting multilanguage …



@7171

9 years 
rlentz 
Initial import of the 'server side' implementation for the EJB, Hessian …



@7170

9 years 
rlentz 
Demo using EJB components on Glassfish, supporting multilanguage …



@7169

9 years 
melissa 
Backported r6515, r6527, and most of r7071 to fix a few problems with …



@7168

9 years 
aivar 
Switched to tau from lambda. Added stretched exponential fitting. …



@7167

9 years 
aivar 
Added setFittedComponents and refineFit, to enable cumulative curve …


