source: trunk/components/loci-plugins @ 6682

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Diff Rev Age Author Log Message
(edit) @6682   9 years curtis Add a flag to disable tests with special requirements. All tests now pass.
(edit) @6676   9 years curtis Fix bug with dimensional extents between multiple series.
Diff Rev Age Author Log Message
(edit) @6673   9 years curtis Better error handling when constructing base reader object.
(edit) @6672   9 years curtis Fix typo.
(edit) @6668   9 years curtis Fix autoscaling bugs, and rework autoscaling tests.
(edit) @6660   9 years curtis Remove unnecessary thumbnail autoscaling logic.
(edit) @6659   9 years curtis Disable 'Record modifications to virtual stack' option (broken anyway).
(edit) @6658   9 years curtis Fix problem with virtual stack pixel types.
(edit) @6657   9 years curtis Use 'uncalibrated' values for CompositeImage min/max.
(edit) @6656   9 years curtis If TimeIncrement is missing, average DeltaT values for ImageJ time …
(edit) @6654   9 years curtis Progress on Bio-Formats Importer: * Readd support for Ext.openImage and …
Diff Rev Age Author Log Message
(edit) @6625   9 years curtis Fix autoscaling problem with >8-bit CompositeImages.
Diff Rev Age Author Log Message
(edit) @6610   9 years curtis Change default stack order to XYCZT, to match Hyperstack view option.
(edit) @6609   9 years curtis Fix bug in 'Metadata only' stack view option.
(edit) @6604   9 years curtis Readd "Standard ImageJ" stack view option. Note that non-hyperstacks …
(edit) @6603   9 years curtis Cosmetic tweaks.
(edit) @6598   9 years curtis Preserve channel-specific LUTs. Fixes #495 (again).
(edit) @6595   9 years curtis Better error handling when reading thumbnails.
Diff Rev Age Author Log Message
(edit) @6592   9 years curtis Update required ImageJ version to 1.42+, due to CompositeImage.setLUTs …
Diff Rev Age Author Log Message
(edit) @6588   9 years curtis Update copyright notice for LOCI plugins.
Diff Rev Age Author Log Message
(edit) @6585   9 years curtis Update component version numbers from 4.1.1 to 4.2-DEV.
(edit) @6581   9 years curtis Preserve dimensional extents on concatenation.
(edit) @6580   9 years curtis Update color mode documentation a bit.
Diff Rev Age Author Log Message
(edit) @6575   9 years curtis Disable calibration function for INT32, since FloatProcessor is used. Also …
Diff Rev Age Author Log Message
(edit) @6571   9 years curtis Fix indexing bug when reading only a subset of planes.
(edit) @6570   9 years curtis Minor tweaks.
(edit) @6563   9 years curtis Remove debugging statement.
(edit) @6561   9 years curtis Do not fill indices for true color data if LUT is compatible with ImageJ.
Diff Rev Age Author Log Message
(edit) @6554   9 years curtis Progress on proper handling of color modes.
Diff Rev Age Author Log Message
(edit) @6522   9 years curtis Fix problem with Stack Slicer macro keys.
(edit) @6521   9 years curtis Use explicit version number for JUnit JAR.
(edit) @6519   9 years bdezonia minor refactorings
(edit) @6518   9 years bdezonia further work on various methods
(edit) @6517   9 years melissa Fixed scan-deps.pl warnings.
(edit) @6514   9 years melissa Javadoc tweaks.
(edit) @6513   9 years bdezonia edits towards a general getColorTable() based testing method. Also enabled …
(edit) @6512   9 years melissa Fixed a couple of minor channel bugs. testColorizeSubcases should pass …
(edit) @6511   9 years bdezonia remove print statements to simplify debugging
(edit) @6510   9 years bdezonia further work related to testColorizedSubcases()
(edit) @6506   9 years melissa * Updated JUnit version so that ImageJ plugin tests compile. * Overrode …
(edit) @6502   9 years melissa Implemented colorizing when SizeC == 1, and fixed color handling when …
(edit) @6500   9 years melissa Apply one LUT to each channel if the original file contains its own LUTs. …
(edit) @6499   9 years melissa Fixed bug introduced in r6497, for real this time.
(edit) @6498   9 years melissa Fixed bug introduced in r6497.
(edit) @6497   9 years melissa Throw an exception if ImageProcessor types don't match.
(edit) @6495   9 years melissa Updated email address.
(edit) @6493   9 years bdezonia improved a number of methods (testComboCropAutoscale, testDatasetGroup, …
(edit) @6488   9 years bdezonia Fixed issue in adjustColorRange() with calculation of max and min
(edit) @6481   9 years curtis Remove debugging statements.
(edit) @6480   9 years curtis Tweak creation of ColorModel.
(edit) @6478   9 years curtis Readd support for obsolete "Standard ImageJ" stack view option.
(edit) @6476   9 years curtis Add compatibility later for obsolete color options. This should allow old …
(edit) @6475   9 years curtis Organize methods a little better.
(edit) @6474   9 years curtis Add a note about the use of ImporterPrompter in BF.openImagePlus.
(edit) @6473   9 years curtis Clarify and expound on some TODOs.
(edit) @6471   9 years bdezonia in middle of writing testColorColorizedSubcases() - incomplete
(edit) @6470   9 years curtis Fix some Eclipse warnings.
(edit) @6469   9 years curtis Force non-overlapping ZCT order when swapping dimensions.
(edit) @6467   9 years curtis Fix a couple of minor Mac OS X specific bugs.
(edit) @6466   9 years curtis Fix some problems with the series chooser. If there are more than 200 …
(edit) @6458   9 years melissa Moved ome.xml.r201004.* to ome.xml.model.* in trunk.
(edit) @6456   9 years bdezonia testComboManyOptions() - added verification of crop size
(edit) @6455   9 years bdezonia testComboManyOptions() - enhanced range testing
(edit) @6454   9 years bdezonia testComboManyOptions() - improved and working
(edit) @6453   9 years bdezonia testComboManyOptions - save working version with debug code in place
(edit) @6450   9 years curtis Better indexed color logic; still broken in various cases though.
(edit) @6449   9 years bdezonia testComboManyOptions - temp/wrong implementation. Various other changes.
(edit) @6447   9 years curtis Fix testDatasetSwapDims.
(edit) @6442   9 years curtis Clean up indexed color table generation a bit.
(edit) @6441   9 years bdezonia Fixed comboConcatSplit code. BF broken here.
(edit) @6439   9 years bdezonia Added comboConcatSplitTest(). Other small edits.
(edit) @6434   9 years curtis Throw IllegalArgumentException for invalid Z/C/T step.
(edit) @6433   9 years curtis Fix intensity scaling issue with signed and float pixel types.
(edit) @6432   9 years curtis Fix problem with step size of 0.
(edit) @6431   9 years bdezonia Clarified TODOs at top of file
(edit) @6421   9 years bdezonia further work on testColorComposite
(edit) @6410   9 years bdezonia some refactoring, some composite test code
(edit) @6408   9 years curtis Fix image calibration bug.
(edit) @6403   9 years bdezonia Minor edits
(edit) @6394   9 years bdezonia More work on color tests
(edit) @6393   9 years bdezonia Some work on color tests
(edit) @6387   9 years bdezonia Made testColorCustom work with corrected BF code
(edit) @6385   9 years curtis Fix rounding error in LUT generation.
(edit) @6348   9 years bdezonia minor edits
(edit) @6347   9 years bdezonia minor edit in MemoryRecordTest
(edit) @6346   9 years bdezonia simplified MemoryRecordTest
(edit) @6345   9 years curtis Remove some obsolete code.
(edit) @6344   9 years bdezonia more work on color tests. work on memoryRecord test too.
(edit) @6342   9 years curtis Initial implementation for custom color mode.
(edit) @6340   9 years curtis Tweak comments.
(edit) @6338   9 years curtis Fix DataBrowser bugs with newer versions of ImageJ.
(edit) @6331   9 years bdezonia Stubbed out color tests
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