#
# ChangeLog for trunk/projects/slim-plugin/src/main/java/loci
# 
# Generated by Trac 0.12.2
# 12/07/19 23:01:15
 
Sat, 18 Feb 2012 02:34:14 GMT aivar [7892]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/Excitation.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ExcitationFileHandler.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/callable/FittingEngineCallable.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/params/GlobalFitParams.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/params/IGlobalFitParams.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/heuristics/CursorHelper.java (moved)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationGraph.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationPanel.java (modified)

	SLIM Plugin: Work in progress; make sure fits agree with TRI2.


Mon, 13 Feb 2012 15:55:09 GMT aivar [7889]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/DecayImageWrapper.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/OutputImageWrapper.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/FitInfo.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/IDecayImage.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/IFittedImage.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/callable (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/callable/FittingEngineCallable.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/callable/IFittingEngineCallable.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/config (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/config/Configuration.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/config/ConfigurationHelper.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/cursor (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/cursor/Cursor.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/cursor/ICursor.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/cursor/ICursorEstimator.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/cursor/LameCursorEstimator.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/engine (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/engine/IFittingEngine.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/engine/ThreadedFittingEngine.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/images (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/images/AbstractBaseColorizedImage.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/images/ColorizedImage.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/images/ColorizedImageFactory.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/images/ColorizedImageFitter.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/images/ColorizedImageParser.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/images/FractionalContributionImage.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/images/FractionalIntensityImage.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/images/IColorizedImage.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/params (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/params/FitResults.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/params/GlobalFitParams.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/params/IFitResults.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/params/IGlobalFitParams.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/params/ILocalFitParams.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/fitting/params/LocalFitParams.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/heuristics (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/heuristics/Estimator.java (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/heuristics/IEstimator.java (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/histogram (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/histogram/ColorBarPanel.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/histogram/DoubleFormatter.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/histogram/HistogramData.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/histogram/HistogramDataChannel.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/histogram/HistogramPanel.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/histogram/HistogramTool.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/histogram/IHistogramDataListener.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/histogram/IHistogramPanelListener.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/histogram/IUIPanelListener.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/histogram/PaletteFix.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/histogram/UIPanel.java (copied)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/process (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/process/IProcessor.java (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/process/Threshold.java (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)

	Fixed some channel bugs; started Estimator.


Thu, 09 Feb 2012 01:08:00 GMT aivar [7887]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/FitInfo.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/IDecayImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/IFittedImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/AbstractBaseColorizedImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/ColorizedImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/ColorizedImageFactory.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/ColorizedImageFitter.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/FractionalContributionImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/FractionalIntensityImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramData.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramDataChannel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/UIPanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixelEffectIterator.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/DecayImageWrapper.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/GrayScaleImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/OutputImageWrapper.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)

	SLIM Plugin: Got multiple channel fitting working.


Sat, 04 Feb 2012 02:22:06 GMT aivar [7886]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/Test.java (deleted)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/TestFittingEngineConcepts.java (deleted)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramPanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramTool.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/refactor/ui/charts/DecayGraph.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)

	SLIMPlugin: Tidied up a bit.  Fixed minor bugs in decay graph, ...


Sat, 28 Jan 2012 01:47:49 GMT aivar [7875]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/Test.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/FitInfo.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/callable/FittingEngineCallable.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/AbstractBaseColorizedImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramData.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramTool.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixelTableImpl.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/CursorHelper.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/DecayImageWrapper.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/OutputImageWrapper.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/ISLIMAnalyzer.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalysis.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/ExportToText.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/VisADAnalysisPlugin.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)

	Continued refactoring.  Fitted image working better now.


Sat, 14 Jan 2012 02:39:07 GMT aivar [7867]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/FitInfo.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/IDecayImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/DecayImageWrapper.java (moved)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)

	Refactoring.


Fri, 13 Jan 2012 21:33:03 GMT aivar [7866]
	* trunk/projects/slim-plugin/src/main/java/imagej/charts/cursors/Cursor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/charts/cursors/CursorLayer.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/FitInfo.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/IDecayImage.java (moved)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/IFittedImage.java (moved)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/InputImageWrapper.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/OutputImageWrapper.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)

	Refactoring.


Thu, 12 Jan 2012 02:38:35 GMT aivar [7865]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/FitInfo.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/IInputImage.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/IOutputImage.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/AbstractBaseColorizedImage.java (moved)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/ColorizedImage.java (moved)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/ColorizedImageFactory.java (moved)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/ColorizedImageFitter.java (moved)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/ColorizedImageParser.java (moved)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/FractionalContributionImage.java (moved)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/FractionalIntensityImage.java (moved)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/images/IColorizedImage.java (moved)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramData.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/InputImageWrapper.java (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/OutputImageWrapper.java (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)

	Refactoring


Sat, 07 Jan 2012 01:54:37 GMT aivar [7864]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/FitInfo.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/engine/IFittingEngine.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/ISLIMAnalyzer.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalysis.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/ExportToText.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/VisADAnalysisPlugin.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)

	Refactoring.


Wed, 04 Jan 2012 00:02:24 GMT aivar [7862]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/params/GlobalFitParams.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/params/IGlobalFitParams.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)

	Clean up image fitting code.


Wed, 21 Dec 2011 00:45:53 GMT aivar [7842]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/AbstractBaseFittedImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/FittedImageManager.java (deleted)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/IFittedImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/InvalidDouble.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/callable/FittingEngineCallable.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/params/GlobalFitParams.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/params/IGlobalFitParams.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramDataChannel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)

	UI panel now has noise model, fitted images, and chi square target


Tue, 20 Dec 2011 00:45:13 GMT aivar [7839]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/FLIMFittedImageFactory.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/FLIMImageFitter.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)

	UI Changes


Mon, 19 Dec 2011 07:35:32 GMT aivar [7838]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/AbstractBaseFittedImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/ColorBarPanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramData.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramPanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramTool.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/IHistogramDataListener.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/IHistogramPanelListener.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/UIPanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)

	Continued work on histogram, add fields to user interface.


Thu, 15 Dec 2011 21:40:53 GMT aivar [7837]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramPanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramTool.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/IHistogramPanelListener.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/MyStackWindow.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)

	Still working on fitted images, starting UI changes


Thu, 15 Dec 2011 00:14:07 GMT aivar [7835]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizer2.java (modified)

	Fixed bug that killed Jenkins compile


Tue, 13 Dec 2011 06:58:58 GMT aivar [7832]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/AbstractBaseFittedImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/FittedImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/FractionalContributionImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/config/Configuration.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramTool.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizer2.java (modified)

	Shows fitted images.  Needs work & buggy.


Tue, 13 Dec 2011 00:18:57 GMT aivar [7830]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/AbstractBaseFittedImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/FLIMFittedImageFactory.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/FLIMImageFitter.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/IFittedImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)

	Can now display selection of fitted images; buggy.


Fri, 09 Dec 2011 02:09:38 GMT aivar [7825]
	* trunk/projects/slim-plugin/lkjl.irf (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/IOutputImage.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/ImageFitter.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/OutputImage.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/OutputImageFactory.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/ColorBarPanel.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramChannelData.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramData.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramPanel.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/HistogramTool.java (added)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/histogram/UIPanel.java (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizer2.java (modified)

	Misc work in progress


Fri, 09 Dec 2011 02:08:39 GMT aivar [7824]
	* trunk/projects/slim-plugin/src/main/java/imagej/histogram (deleted)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/histogram (deleted)

	Miscellaneous work in progress.


Sat, 03 Dec 2011 02:58:15 GMT aivar [7821]
	* trunk/projects/slim-plugin/src/main/java/ij (added)
	* trunk/projects/slim-plugin/src/main/java/ij/process (added)
	* trunk/projects/slim-plugin/src/main/java/ij/process/MyFloatProcessor.java (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/MyStackWindow.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizer2.java (added)

	Experimented with MyFloatProcessor and DataColorizer2 to get IJ LUTs ...


Sat, 19 Nov 2011 01:57:07 GMT aivar [7811]
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/Test.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/callable/FittingEngineCallable.java (moved)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/callable/IFittingEngineCallable.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/config/Configuration.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/engine/IFittingEngine.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/engine/ThreadedFittingEngine.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/params/FitResults.java (moved)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/params/GlobalFitParams.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/params/IFitResults.java (moved)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/params/IGlobalFitParams.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/params/ILocalFitParams.java (modified)
	* trunk/projects/slim-plugin/src/main/java/imagej/slim/fitting/params/LocalFitParams.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/CursorHelper.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)

	Got the new style fitting engine working.  Bit of a hack;
	SLIMProcessor ...


Fri, 11 Nov 2011 21:21:12 GMT aivar [7804]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/refactor/ui/charts/DecayGraph.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/refactor/ui/charts/IDecayGraph.java (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanelListener.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/histogram (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/histogram/HistogramData.java (added)

	Don't pop up multiple DecayGraphs


Sat, 29 Oct 2011 01:05:38 GMT aivar [7796]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/refactor (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/refactor/ui (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/refactor/ui/charts (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/refactor/ui/charts/DecayGraph.java (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/refactor/ui/intensity (added)

	Added "refactor" package to avoid conflicts.  Tidy up DecayGraph and ...


Fri, 28 Oct 2011 19:08:36 GMT aivar [7795]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/CursorHelper.java (modified)

	Emulate TRI2 parameter estimation.


Fri, 14 Oct 2011 18:29:34 GMT aivar [7794]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ExcitationFileHandler.java (modified)

	Better handle ICS excitation files.


Mon, 29 Aug 2011 17:11:42 GMT aivar [7741]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/GrayScaleImage.java (modified)

	Uses ComplexType vs UnsignedShort previously.  Added "@Override"
	where ...


Mon, 29 Aug 2011 17:02:07 GMT aivar [7740]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)

	Misc. changes; took out fakeData and some debugging print outs.


Thu, 14 Apr 2011 02:32:19 GMT aivar [7699]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)

	Removed IJ.log debugging message.


Wed, 13 Apr 2011 22:38:57 GMT aivar [7697]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)

	Was using a listener w/o checking for null value first.


Wed, 13 Apr 2011 22:38:27 GMT aivar [7696]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)

	Getting the quit button to work correctly.


Thu, 07 Apr 2011 21:53:04 GMT aivar [7682]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/ThreeColorColorize.java (modified)

	Fit parameters that were fixed were always displayed as black.


Thu, 07 Apr 2011 21:52:44 GMT aivar [7681]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/FiveColorColorize.java (modified)

	Fit parameters that were fixed were always displayed as black.


Mon, 28 Mar 2011 21:36:48 GMT aivar [7677]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/GrayScaleImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/IGrayScaleImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/MyStackWindow.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)

	Fixed array out of bounds when grayscale image is zoomed and you
	click ...


Sat, 26 Mar 2011 20:18:44 GMT curtis [7676]
	* trunk/projects/slim-plugin/pom.xml (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ImageUtils.java (added)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/MyStackWindow.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/VisADAnalysisPlugin.java (modified)

	Eliminate dependencies on old IJ2 projects.


Sat, 26 Mar 2011 01:19:17 GMT aivar [7674]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/DecayGraph.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/Excitation.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ExcitationFileHandler.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/GrayScaleImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationGraph.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationPanel.java (modified)

	CurveFitData needs to keep track of how many pixels went into each
	data ...


Fri, 25 Mar 2011 03:04:01 GMT aivar [7672]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/CursorHelper.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/DecayGraph.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationPanel.java (modified)

	Loading/using IRFs.  Estimate decay cursors.


Thu, 24 Mar 2011 01:28:55 GMT aivar [7671]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/CursorHelper.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/DecayGraph.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/Excitation.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ExcitationFileHandler.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationGraph.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanelListener.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)

	Moved loading an Excitation and setting up the ExcitationPanel to ...


Tue, 22 Mar 2011 22:06:13 GMT curtis [7668]
	* trunk/check-links.pl (added)
	* trunk/legacy/jvmlink/src/main/java/loci/jvmlink/ConnThread.java (modified)
	* trunk/legacy/jvmlink/src/main/java/loci/jvmlink/JVMLinkServer.java (modified)
	* trunk/legacy/multi-lut/src/main/java/loci/apps/MultiLUT.java (modified)
	* trunk/projects/EJBHessianFHT/test/org/imagejdev/beans/FHTEJBEndpointTest.java (modified)
	* trunk/projects/cppwrap-maven-plugin/src/main/java/loci/maven/plugin/cppwrap/CppWrapMojo.java (modified)
	* trunk/projects/curve-fitter/src/main/java/loci/curvefitter/AbstractCurveFitter.java (modified)
	* trunk/projects/curve-fitter/src/main/java/loci/curvefitter/AkutanCurveFitter.java (modified)
	* trunk/projects/curve-fitter/src/main/java/loci/curvefitter/CurveFitData.java (modified)
	* trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayCurveFitter.java (modified)
	* trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayNRCurveFitter.java (modified)
	* trunk/projects/curve-fitter/src/main/java/loci/curvefitter/MarkwardtCurveFitter.java (modified)
	* trunk/projects/curve-fitter/src/main/java/loci/curvefitter/SLIMCurveFitter.java (modified)
	* trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/AbstractPipelineProcessor.java (modified)
	* trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/IPipelineProcessor.java (modified)
	* trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/IProcessor.java (modified)
	* trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/IPropertyCollection.java (modified)
	* trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/PropertyCollection.java (modified)
	* trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/deepzoom/CutTilesProcessor.java (modified)
	* trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/deepzoom/DeepZoomExporter.java (modified)
	* trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/deepzoom/ScaleInHalfProcessor.java (modified)
	* trunk/projects/deep-zoom-plugin/src/main/java/loci/deepzoom/plugin/ImageWrapper.java (modified)
	* trunk/projects/deep-zoom-plugin/src/main/java/loci/deepzoom/workflow/plugin/ItemWrapper.java (modified)
	* trunk/projects/deep-zoom-plugin/src/main/java/loci/multiinstanceplugin/deepzoom/CutTilesProcessor.java (modified)
	* trunk/projects/deep-zoom-plugin/src/main/java/loci/multiinstanceplugin/deepzoom/DeepZoomExporter.java (modified)
	* trunk/projects/deep-zoom-plugin/src/main/java/loci/multiinstanceplugin/deepzoom/ScaleInHalfProcessor.java (modified)
	* trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/Detector.java (modified)
	* trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/FlowCytometry.java (modified)
	* trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/Particle.java (modified)
	* trunk/projects/jar2lib/src/main/java/loci/jar2lib/ClassList.java (modified)
	* trunk/projects/jar2lib/src/main/java/loci/jar2lib/FixProxies.java (modified)
	* trunk/projects/jar2lib/src/main/java/loci/jar2lib/Jar2Lib.java (modified)
	* trunk/projects/jar2lib/src/main/java/loci/jar2lib/StringReplace.java (modified)
	* trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityAutogen.java (modified)
	* trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityException.java (modified)
	* trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityTools.java (modified)
	* trunk/projects/loci-checks/src/main/java/loci/checks/About.java (modified)
	* trunk/projects/loci-checks/src/main/java/loci/checks/BlankLinesCheck.java (modified)
	* trunk/projects/misc-plugins/src/main/java/Export_As_Text.java (modified)
	* trunk/projects/misc-plugins/src/main/java/Roi_Map.java (modified)
	* trunk/projects/opencl-decon/src/demos/HelperUtils.java (modified)
	* trunk/projects/opencl-decon/src/demos/Iterative_3D_Deconvolution.java (modified)
	* trunk/projects/opencl-decon/src/demos/ProgramTest.java (modified)
	* trunk/projects/opencl-decon/src/demos/SobelWS.java (modified)
	* trunk/projects/opencl-decon/src/org/imagejdev/api/ClassPathHacker.java (modified)
	* trunk/projects/opencl-decon/src/org/imagejdev/api/StreamToString.java (modified)
	* trunk/projects/slim-plotter/data/MakeData.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/ColorWidget.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/MouseBehaviorButtons.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/SlimData.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/SlimPlotter.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/SlimTypes.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/SpringUtilities.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/TextTransfer.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/TwoDPane.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/fit/BurnInRenderer.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveCollection.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveEvent.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveFitter.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveFitterTester.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveListener.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveRenderer.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveReporter.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/fit/GACurveFitter.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/fit/ICurveFitter.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/fit/ICurveRenderer.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/fit/LMCurveFitter.java (modified)
	* trunk/projects/slim-plotter/src/main/java/loci/slim/fit/RendererSwitcher.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixelEffectIterator.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixelTableImpl.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/CursorHelper.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/DecayGraph.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/Excitation.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ExcitationFileHandler.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/GrayScaleImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/IChunkyPixelTable.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/IGrayScaleImage.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ISelectListener.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/MyStackWindow.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIM_PlugIn.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/ISLIMAnalyzer.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalysis.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalyzer.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/ExportToText.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/VisADAnalysisPlugin.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/binning/ISLIMBinner.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/binning/SLIMBinner.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/binning/SLIMBinning.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin3x3.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin5x5.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin7x7.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/BinNxN.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/ColorBar.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizer.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizerUI.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/FiveColorColorize.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/Histogram.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/IColorize.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/IColorizeRangeListener.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/InputPanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/LifetimeHistogram.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/MultiColorColorize.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/ThreeColorColorize.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationGraph.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationPanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IStartStopBaseListener.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IStartStopListener.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanelListener.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/SpringUtilities.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)
	* trunk/projects/utils/src/main/java/Ascii.java (modified)
	* trunk/projects/utils/src/main/java/Binary.java (modified)
	* trunk/projects/utils/src/main/java/BinaryDiff.java (modified)
	* trunk/projects/utils/src/main/java/CompareTrees.java (modified)
	* trunk/projects/utils/src/main/java/DownloadURL.java (modified)
	* trunk/projects/utils/src/main/java/DumpClass.java (modified)
	* trunk/projects/utils/src/main/java/EditDistance.java (modified)
	* trunk/projects/utils/src/main/java/FileOpsTest.java (modified)
	* trunk/projects/utils/src/main/java/FixEOLSpaces.java (modified)
	* trunk/projects/utils/src/main/java/LineLength.java (modified)
	* trunk/projects/utils/src/main/java/RandomPass.java (modified)
	* trunk/projects/utils/src/main/java/SortList.java (modified)
	* trunk/projects/utils/src/main/java/SysProps.java (modified)
	* trunk/projects/utils/src/main/java/TestMem.java (modified)
	* trunk/projects/utils/src/main/java/UniqueTraces.java (modified)
	* trunk/projects/utils/src/main/java/UnusedImports.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/BioDropHandler.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/BioTask.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ConsoleManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ControlPanel.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ExitManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/LogicManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/MacAdapter.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/PanelManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/SystemControls.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/SystemManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/TaskControls.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/TaskManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/VisBio.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/VisBioEvent.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/VisBioFrame.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/WindowInfo.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/WindowManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/WindowState.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/ArbitrarySlice.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/CollapseTransform.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/CollapseWidget.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/DataCache.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/DataControls.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/DataManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/DataSampling.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/DataTransform.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/Dataset.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/DatasetWidget.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/ExportPane.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/ImageTransform.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/ProjectionTransform.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/ProjectionWidget.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/SamplingThumbHandler.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/SamplingWidget.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/SendToIJPane.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/SliceWidget.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/SpectralTransform.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/SpectralWidget.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/ThumbnailCache.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/ThumbnailHandler.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/TransformEvent.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/data/TransformListener.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ext/ExtManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ext/ExternalFunction.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ext/ExternalProgram.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ext/FunctionParam.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ext/FunctionWidget.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ext/MatlabFunction.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ext/MatlabUtil.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/help/HelpManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/help/HelpTopic.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/help/HelpWindow.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ome/ImageUploader.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ome/OMEImage.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ome/OMELoginPane.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/ome/OMEManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/ArrowTool.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/BoxTool.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/FreeformExtension.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/FreeformTool.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/LineTool.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/MarkerTool.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OvalTool.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayArrow.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayBox.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayFreeform.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayIO.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayLine.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayMarker.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayNodedObject.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayNumericStrategy.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayObject.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayOval.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayPolyline.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayText.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayTool.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayTransform.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayUtil.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayWidget.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/PointerTool.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/PolylineTool.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/SpreadsheetLaunchException.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/SpreadsheetLauncher.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/StatsOptionsPane.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/TextTool.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/overlays/TransientSelectBox.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/BioOption.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/BooleanOption.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/CustomOption.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/Dynamic.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/ListOption.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/NumericOption.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/OptionManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/OptionPane.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/ProgramState.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/ResolutionOption.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/ResolutionToggleOption.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/SaveException.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/Saveable.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/SpreadsheetLaunchOption.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/SpreadsheetOptionStrategy.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/StateManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/state/StringOption.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/BioArrowButton.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/BioComboBox.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/BreakawayPanel.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/BrowserLauncher.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/ColorUtil.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/DataUtil.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/DialogPane.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/DisplayUtil.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/Docker.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/FontChooserPane.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/FormsUtil.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/ImageJUtil.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/InstanceServer.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/LAFUtil.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/MathUtil.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/MessagePane.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/ObjectUtil.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/OutputConsole.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/OutputEvent.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/OutputListener.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/Segment2D.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/SpawnEvent.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/SpawnListener.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/SplashScreen.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/SwingUtil.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/WarningPane.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/WizardPane.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/util/XMLUtil.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/BioColorWidget.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/BioSlideWidget.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/CaptureHandler.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/CapturePanel.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/ColorHandler.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/ColorPane.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayControls.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayManager.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayPosition.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayWindow.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/SliceToggler.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/StackHandler.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/StackLink.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/StackPanel.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/TransformHandler.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/TransformLink.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/TransformPanel.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/ViewHandler.java (modified)
	* trunk/projects/visbio/src/main/java/loci/visbio/view/ViewPanel.java (modified)
	* trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/DummyImageTransform.java (modified)
	* trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/DummyOverlayTransform.java (modified)
	* trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/OverlayNodedObjectTest.java (modified)
	* trunk/projects/visbio/src/test/java/loci/visbio/utests/util/MathUtilTest.java (modified)
	* trunk/projects/visbio/src/test/java/loci/visbio/utests/util/Segment2DTest.java (modified)
	* trunk/projects/wiscscan-java/src/main/java/loci/wiscscan/XSLTTools.java (modified)
	* trunk/projects/wiscscan-java/src/main/java/loci/wiscscan/auth/AutoLoginHandler.java (modified)
	* trunk/projects/wiscscan-java/src/main/java/loci/wiscscan/auth/Credentials.java (modified)
	* trunk/projects/wiscscan-java/src/main/java/loci/wiscscan/auth/KerberosAuth.java (modified)

	Clean up headers, and add a script to check them.


Tue, 22 Mar 2011 01:26:18 GMT aivar [7663]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/ExportToText.java (modified)

	Export to text working.


Fri, 18 Mar 2011 01:48:54 GMT aivar [7658]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalysis.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/ExportToText.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanel.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)

	Fixed various bugs.  Made export to text better.


Wed, 16 Mar 2011 01:17:02 GMT aivar [7654]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified)

	Added new RLD+LMA fit option.  Consistency with TRI2.  Added
	excitation ...


Wed, 16 Mar 2011 01:16:07 GMT aivar [7653]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanel.java (modified)

	Added new RLD+LMA fit option.


Wed, 16 Mar 2011 01:15:31 GMT aivar [7652]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/ExportToText.java (modified)

	Work in progress.  Broken.


Wed, 16 Mar 2011 01:15:15 GMT aivar [7651]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java (modified)

	Consistency with TRI2.


Wed, 16 Mar 2011 01:14:44 GMT aivar [7650]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)

	Fixed bugs in ROI fitting, et. al.


Wed, 16 Mar 2011 01:13:29 GMT aivar [7649]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/DecayGraph.java (modified)

	Changed excitation to be autoranging.  Modified (some) colors in
	synch ...


Wed, 16 Mar 2011 01:12:44 GMT aivar [7648]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IStartStopBaseListener.java (added)

	New class listens for excitation graph cursor changes.


Wed, 16 Mar 2011 01:12:10 GMT aivar [7647]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationPanel.java (added)

	New class contains excitation graph and cursor info.


Wed, 16 Mar 2011 01:11:44 GMT aivar [7646]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationGraph.java (added)

	New class displays excitation and its cursors.


Wed, 16 Mar 2011 01:11:07 GMT aivar [7645]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/ExcitationFileHandler.java (added)

	New class loads and saves excitation files.


Wed, 16 Mar 2011 01:10:49 GMT aivar [7644]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/Excitation.java (added)

	New class handles excitation (IRF curve).


Wed, 16 Mar 2011 01:10:12 GMT aivar [7643]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/CursorHelper.java (added)

	New class computes excitation and decay cursors (start/stop/base ...


Tue, 15 Feb 2011 23:00:44 GMT curtis [7616]
	* trunk/projects/slim-plugin/pom.xml (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/VisADAnalysisPlugin.java (modified)

	Update slim-plugin dependencies to match latest ImageJ2 project ...


Fri, 28 Jan 2011 05:59:41 GMT aivar [7605]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)

	I had inverted the image to correspond with SLIMPlotter, but the
	natural ...


Fri, 28 Jan 2011 05:57:32 GMT aivar [7604]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/GrayScaleImage.java (modified)

	I had inverted the image to correspond with SLIMPlotter, but the
	natural ...


Fri, 28 Jan 2011 05:56:17 GMT aivar [7603]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java (modified)

	Thought there might be a bug here, so made the display table more ...


Fri, 28 Jan 2011 05:54:58 GMT aivar [7602]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizer.java (modified)

	Added TODO comment.


Fri, 28 Jan 2011 05:54:15 GMT aivar [7601]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/BinNxN.java (modified)

	Needed an out of bounds strategy.


Fri, 28 Jan 2011 05:53:58 GMT aivar [7600]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin7x7.java (added)

	New 7x7 binner.


Fri, 28 Jan 2011 05:53:48 GMT aivar [7599]
	* trunk/projects/slim-plugin/src/main/java/loci/colorizer (deleted)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/DataColorizer.java (deleted)

	Deleted some vestigial files.


Thu, 27 Jan 2011 20:50:08 GMT aivar [7597]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java (modified)
	* trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizerUI.java (modified)

	Fixed null pointer exception when library not found.


Wed, 26 Jan 2011 05:13:08 GMT curtis [7591]
	* trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMPlugInAuto.java (deleted)

	Remove obsolete class.


Wed, 26 Jan 2011 04:43:16 GMT curtis [7587]
	* branches/maven (deleted)
	* branches/maven/legacy/ome-editor (deleted)
	* branches/maven/legacy/ome-notes (deleted)
	* branches/maven/projects/autogen (deleted)
	* branches/maven/projects/bio-formats (deleted)
	* branches/maven/projects/loci-common (deleted)
	* branches/maven/projects/loci-plugins (deleted)
	* branches/maven/projects/loci-tools (deleted)
	* branches/maven/projects/ome-io (deleted)
	* branches/maven/projects/ome-plugins (deleted)
	* branches/maven/projects/ome-tools (deleted)
	* branches/maven/projects/ome-xml (deleted)
	* branches/maven/projects/test-suite (deleted)
	* trunk/ant (deleted)
	* trunk/build.xml (deleted)
	* trunk/checkstyle.xml (deleted)
	* trunk/components (deleted)
	* trunk/excludebugs.xml (deleted)
	* trunk/jar (deleted)
	* trunk/legacy (copied)
	* trunk/lib (deleted)
	* trunk/pom (copied)
	* trunk/pom.xml (copied)
	* trunk/projects (copied)
	* trunk/scan-deps.pl (deleted)
	* trunk/tools (deleted)
	* trunk/utils (deleted)

	Remove Bio-Formats projects, and merge Maven branch.

	Bio-Formats has ...


Mon, 27 Dec 2010 22:39:21 GMT aivar [7468]
	* branches/maven/projects/slim-plugin/src/main/java/loci/slim/GrayScaleImage.java (modified)

	Grayscale image wasn't showing up.