source: trunk/projects/slim-plugin/src @ 7888

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Diff Rev Age Author Log Message
(edit) @7888   8 years aivar Fixed some channel bugs; started Estimator.
(edit) @7887   8 years aivar SLIM Plugin: Got multiple channel fitting working.
(edit) @7886   8 years aivar SLIMPlugin: Tidied up a bit. Fixed minor bugs in decay graph, histogram, …
(edit) @7879   8 years aivar Improved setting the LUT bounds with the histogram tool.
(edit) @7875   8 years aivar Continued refactoring. Fitted image working better now.
(edit) @7867   8 years aivar Refactoring.
(edit) @7866   8 years aivar Refactoring.
(edit) @7865   8 years aivar Refactoring
(edit) @7864   8 years aivar Refactoring.
(edit) @7862   8 years aivar Clean up image fitting code.
(edit) @7861   8 years aivar HistogramTool has problems finding the lifetime LUT on Linux when Fiji is …
(edit) @7858   8 years aivar Starting Chart and CursorLayer/Cursor classes for IJ2, based on SLIMPlugin …
(edit) @7851   8 years aivar Was a problem in the channel UI fitting images w/o channels.
(edit) @7850   8 years aivar Changed the hardcoded LUT path from platform specific to IJ relative.
(edit) @7849   8 years aivar New Lifetime LUT.
(edit) @7848   8 years aivar SLIMPlugin: shows colorized range of values using 254 color palette.
(edit) @7847   8 years aivar Format doubles to given number of digits. Entering new start/stop text …
(edit) @7846   8 years aivar Rearrange ui panel layout.
(edit) @7845   8 years aivar Got 254 color palette working in histogram color bar.
(edit) @7844   8 years aivar Added a PaletteFix class with static methods to aid in working with 254 …
(edit) @7843   8 years aivar Use 254 color LUTs
(edit) @7842   8 years aivar UI panel now has noise model, fitted images, and chi square target
(edit) @7840   8 years aivar OutputImageParser added
(edit) @7839   8 years aivar UI Changes
(edit) @7838   8 years aivar Continued work on histogram, add fields to user interface.
(edit) @7837   8 years aivar Still working on fitted images, starting UI changes
(edit) @7836   8 years aivar Added cursors to histogram to change LUT ranges.
(edit) @7835   8 years aivar Fixed bug that killed Jenkins compile
(edit) @7834   8 years aivar Working on histogram
(edit) @7833   8 years aivar Still working on fitted images.
(edit) @7832   8 years aivar Shows fitted images. Needs work & buggy.
(edit) @7831   8 years aivar Shows fitted images. Needs work & buggy.
(edit) @7830   8 years aivar Can now display selection of fitted images; buggy.
(edit) @7829   8 years aivar FLIMImageFitter is coming along
(edit) @7828   8 years aivar Working on the FittedImageManager that will build output fitted images.
(edit) @7825   8 years aivar Misc work in progress
(edit) @7824   8 years aivar Miscellaneous work in progress.
(edit) @7821   8 years aivar Experimented with MyFloatProcessor and DataColorizer2 to get IJ LUTs …
(edit) @7811   8 years aivar Got the new style fitting engine working. Bit of a hack; SLIMProcessor …
(edit) @7807   8 years aivar Work in progress, refactoring fit process
(edit) @7806   8 years aivar Working on calling the curvefitter
(edit) @7805   8 years aivar Added 'imagej.slim' package files from my local TestFittingEngineConcepts …
(edit) @7804   8 years aivar Don't pop up multiple DecayGraphs
(edit) @7796   8 years aivar Added "refactor" package to avoid conflicts. Tidy up DecayGraph and allow …
(edit) @7795   8 years aivar Emulate TRI2 parameter estimation.
(edit) @7794   8 years aivar Better handle ICS excitation files.
(edit) @7770   8 years curtis Move assembly descriptor into src/main/assembly.
(edit) @7741   8 years aivar Uses ComplexType vs UnsignedShort previously. Added "@Override" where …
(edit) @7740   8 years aivar Misc. changes; took out fakeData and some debugging print outs.
(edit) @7699   9 years aivar Removed IJ.log debugging message.
(edit) @7697   9 years aivar Was using a listener w/o checking for null value first.
(edit) @7696   9 years aivar Getting the quit button to work correctly.
(edit) @7684   9 years aivar Build one big happy jar with native shared libraries.
(edit) @7682   9 years aivar Fit parameters that were fixed were always displayed as black.
(edit) @7681   9 years aivar Fit parameters that were fixed were always displayed as black.
(edit) @7677   9 years aivar Fixed array out of bounds when grayscale image is zoomed and you click on …
(edit) @7676   9 years curtis Eliminate dependencies on old IJ2 projects.
(edit) @7674   9 years aivar CurveFitData needs to keep track of how many pixels went into each data …
(edit) @7672   9 years aivar Loading/using IRFs. Estimate decay cursors.
(edit) @7671   9 years aivar Moved loading an Excitation and setting up the ExcitationPanel to …
(edit) @7668   9 years curtis Clean up headers, and add a script to check them.
(edit) @7663   9 years aivar Export to text working.
(edit) @7658   9 years aivar Fixed various bugs. Made export to text better.
(edit) @7654   9 years aivar Added new RLD+LMA fit option. Consistency with TRI2. Added excitation …
(edit) @7653   9 years aivar Added new RLD+LMA fit option.
(edit) @7652   9 years aivar Work in progress. Broken.
(edit) @7651   9 years aivar Consistency with TRI2.
(edit) @7650   9 years aivar Fixed bugs in ROI fitting, et. al.
(edit) @7649   9 years aivar Changed excitation to be autoranging. Modified (some) colors in synch …
(edit) @7648   9 years aivar New class listens for excitation graph cursor changes.
(edit) @7647   9 years aivar New class contains excitation graph and cursor info.
(edit) @7646   9 years aivar New class displays excitation and its cursors.
(edit) @7645   9 years aivar New class loads and saves excitation files.
(edit) @7644   9 years aivar New class handles excitation (IRF curve).
(edit) @7643   9 years aivar New class computes excitation and decay cursors (start/stop/base limits).
(edit) @7616   9 years curtis Update slim-plugin dependencies to match latest ImageJ2 project structure.
(edit) @7605   9 years aivar I had inverted the image to correspond with SLIMPlotter, but the natural …
(edit) @7604   9 years aivar I had inverted the image to correspond with SLIMPlotter, but the natural …
(edit) @7603   9 years aivar Thought there might be a bug here, so made the display table more flexible …
(edit) @7602   9 years aivar Added TODO comment.
(edit) @7601   9 years aivar Needed an out of bounds strategy.
(edit) @7600   9 years aivar New 7x7 binner.
(edit) @7599   9 years aivar Deleted some vestigial files.
(edit) @7597   9 years aivar Fixed null pointer exception when library not found.
(edit) @7591   9 years curtis Remove obsolete class.
(copy) @7587   9 years curtis Remove Bio-Formats projects, and merge Maven branch. Bio-Formats has …
copied from branches/maven/projects/slim-plugin/src:
(edit) @7468   9 years aivar Grayscale image wasn't showing up.
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