# # ChangeLog for trunk/projects/utils # # Generated by Trac 0.12.2 # 12/09/19 09:17:00 Sat, 18 Jun 2011 09:11:18 GMT curtis [7730] * trunk/projects/cppwrap-maven-plugin/pom.xml (modified) * trunk/projects/curve-fitter/pom.xml (modified) * trunk/projects/deep-zoom-plugin/pom.xml (modified) * trunk/projects/flow-cytometry/pom.xml (modified) * trunk/projects/jar2lib/pom.xml (modified) * trunk/projects/loci-checks/pom.xml (modified) * trunk/projects/misc-plugins/pom.xml (modified) * trunk/projects/slim-curve/pom.xml (modified) * trunk/projects/slim-plugin/pom.xml (modified) * trunk/projects/utils/pom.xml (modified) * trunk/projects/wiscscan-java/pom.xml (modified) Fix SVN path to license files. Tue, 22 Mar 2011 22:06:13 GMT curtis [7668] * trunk/check-links.pl (added) * trunk/legacy/jvmlink/src/main/java/loci/jvmlink/ConnThread.java (modified) * trunk/legacy/jvmlink/src/main/java/loci/jvmlink/JVMLinkServer.java (modified) * trunk/legacy/multi-lut/src/main/java/loci/apps/MultiLUT.java (modified) * trunk/projects/EJBHessianFHT/test/org/imagejdev/beans/FHTEJBEndpointTest.java (modified) * trunk/projects/cppwrap-maven-plugin/src/main/java/loci/maven/plugin/cppwrap/CppWrapMojo.java (modified) * trunk/projects/curve-fitter/src/main/java/loci/curvefitter/AbstractCurveFitter.java (modified) * trunk/projects/curve-fitter/src/main/java/loci/curvefitter/AkutanCurveFitter.java (modified) * trunk/projects/curve-fitter/src/main/java/loci/curvefitter/CurveFitData.java (modified) * trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayCurveFitter.java (modified) * trunk/projects/curve-fitter/src/main/java/loci/curvefitter/GrayNRCurveFitter.java (modified) * trunk/projects/curve-fitter/src/main/java/loci/curvefitter/MarkwardtCurveFitter.java (modified) * trunk/projects/curve-fitter/src/main/java/loci/curvefitter/SLIMCurveFitter.java (modified) * trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/AbstractPipelineProcessor.java (modified) * trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/IPipelineProcessor.java (modified) * trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/IProcessor.java (modified) * trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/IPropertyCollection.java (modified) * trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/PropertyCollection.java (modified) * trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/deepzoom/CutTilesProcessor.java (modified) * trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/deepzoom/DeepZoomExporter.java (modified) * trunk/projects/deep-zoom-plugin/src/main/java/loci/chainableplugin/deepzoom/ScaleInHalfProcessor.java (modified) * trunk/projects/deep-zoom-plugin/src/main/java/loci/deepzoom/plugin/ImageWrapper.java (modified) * trunk/projects/deep-zoom-plugin/src/main/java/loci/deepzoom/workflow/plugin/ItemWrapper.java (modified) * trunk/projects/deep-zoom-plugin/src/main/java/loci/multiinstanceplugin/deepzoom/CutTilesProcessor.java (modified) * trunk/projects/deep-zoom-plugin/src/main/java/loci/multiinstanceplugin/deepzoom/DeepZoomExporter.java (modified) * trunk/projects/deep-zoom-plugin/src/main/java/loci/multiinstanceplugin/deepzoom/ScaleInHalfProcessor.java (modified) * trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/Detector.java (modified) * trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/FlowCytometry.java (modified) * trunk/projects/flow-cytometry/src/main/java/loci/apps/flow/Particle.java (modified) * trunk/projects/jar2lib/src/main/java/loci/jar2lib/ClassList.java (modified) * trunk/projects/jar2lib/src/main/java/loci/jar2lib/FixProxies.java (modified) * trunk/projects/jar2lib/src/main/java/loci/jar2lib/Jar2Lib.java (modified) * trunk/projects/jar2lib/src/main/java/loci/jar2lib/StringReplace.java (modified) * trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityAutogen.java (modified) * trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityException.java (modified) * trunk/projects/jar2lib/src/main/java/loci/jar2lib/VelocityTools.java (modified) * trunk/projects/loci-checks/src/main/java/loci/checks/About.java (modified) * trunk/projects/loci-checks/src/main/java/loci/checks/BlankLinesCheck.java (modified) * trunk/projects/misc-plugins/src/main/java/Export_As_Text.java (modified) * trunk/projects/misc-plugins/src/main/java/Roi_Map.java (modified) * trunk/projects/opencl-decon/src/demos/HelperUtils.java (modified) * trunk/projects/opencl-decon/src/demos/Iterative_3D_Deconvolution.java (modified) * trunk/projects/opencl-decon/src/demos/ProgramTest.java (modified) * trunk/projects/opencl-decon/src/demos/SobelWS.java (modified) * trunk/projects/opencl-decon/src/org/imagejdev/api/ClassPathHacker.java (modified) * trunk/projects/opencl-decon/src/org/imagejdev/api/StreamToString.java (modified) * trunk/projects/slim-plotter/data/MakeData.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/ColorWidget.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/MouseBehaviorButtons.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/SlimData.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/SlimPlotter.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/SlimTypes.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/SpringUtilities.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/TextTransfer.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/TwoDPane.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/fit/BurnInRenderer.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveCollection.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveEvent.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveFitter.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveFitterTester.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveListener.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveRenderer.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/fit/CurveReporter.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/fit/GACurveFitter.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/fit/ICurveFitter.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/fit/ICurveRenderer.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/fit/LMCurveFitter.java (modified) * trunk/projects/slim-plotter/src/main/java/loci/slim/fit/RendererSwitcher.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixel.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixelEffectIterator.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/ChunkyPixelTableImpl.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/CursorHelper.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/DecayGraph.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/Excitation.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/ExcitationFileHandler.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/GrayScaleImage.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/IChunkyPixelTable.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/IGrayScaleImage.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/ISelectListener.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/MyStackWindow.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/SLIMProcessor.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/SLIM_PlugIn.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/ISLIMAnalyzer.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalysis.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/SLIMAnalyzer.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/Display.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/ExportToText.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/analysis/plugins/VisADAnalysisPlugin.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/binning/ISLIMBinner.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/binning/SLIMBinner.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/binning/SLIMBinning.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin3x3.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin5x5.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/Bin7x7.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/binning/plugins/BinNxN.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/ColorBar.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizer.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/DataColorizerUI.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/FiveColorColorize.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/Histogram.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/IColorize.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/IColorizeRangeListener.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/InputPanel.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/LifetimeHistogram.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/MultiColorColorize.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/colorizer/ThreeColorColorize.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationGraph.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/ui/ExcitationPanel.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IStartStopBaseListener.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IStartStopListener.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanel.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/ui/IUserInterfacePanelListener.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/ui/SpringUtilities.java (modified) * trunk/projects/slim-plugin/src/main/java/loci/slim/ui/UserInterfacePanel.java (modified) * trunk/projects/utils/src/main/java/Ascii.java (modified) * trunk/projects/utils/src/main/java/Binary.java (modified) * trunk/projects/utils/src/main/java/BinaryDiff.java (modified) * trunk/projects/utils/src/main/java/CompareTrees.java (modified) * trunk/projects/utils/src/main/java/DownloadURL.java (modified) * trunk/projects/utils/src/main/java/DumpClass.java (modified) * trunk/projects/utils/src/main/java/EditDistance.java (modified) * trunk/projects/utils/src/main/java/FileOpsTest.java (modified) * trunk/projects/utils/src/main/java/FixEOLSpaces.java (modified) * trunk/projects/utils/src/main/java/LineLength.java (modified) * trunk/projects/utils/src/main/java/RandomPass.java (modified) * trunk/projects/utils/src/main/java/SortList.java (modified) * trunk/projects/utils/src/main/java/SysProps.java (modified) * trunk/projects/utils/src/main/java/TestMem.java (modified) * trunk/projects/utils/src/main/java/UniqueTraces.java (modified) * trunk/projects/utils/src/main/java/UnusedImports.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/BioDropHandler.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/BioTask.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ConsoleManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ControlPanel.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ExitManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/LogicManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/MacAdapter.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/PanelManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/SystemControls.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/SystemManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/TaskControls.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/TaskManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/VisBio.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/VisBioEvent.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/VisBioFrame.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/WindowInfo.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/WindowManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/WindowState.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/ArbitrarySlice.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/CollapseTransform.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/CollapseWidget.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/DataCache.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/DataControls.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/DataManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/DataSampling.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/DataTransform.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/Dataset.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/DatasetWidget.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/ExportPane.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/ImageTransform.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/ProjectionTransform.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/ProjectionWidget.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/SamplingThumbHandler.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/SamplingWidget.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/SendToIJPane.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/SliceWidget.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/SpectralTransform.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/SpectralWidget.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/ThumbnailCache.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/ThumbnailHandler.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/TransformEvent.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/data/TransformListener.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ext/ExtManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ext/ExternalFunction.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ext/ExternalProgram.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ext/FunctionParam.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ext/FunctionWidget.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ext/MatlabFunction.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ext/MatlabUtil.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/help/HelpManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/help/HelpTopic.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/help/HelpWindow.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ome/ImageUploader.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ome/OMEImage.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ome/OMELoginPane.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/ome/OMEManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/ArrowTool.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/BoxTool.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/FreeformExtension.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/FreeformTool.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/LineTool.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/MarkerTool.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OvalTool.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayArrow.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayBox.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayFreeform.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayIO.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayLine.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayMarker.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayNodedObject.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayNumericStrategy.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayObject.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayOval.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayPolyline.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayText.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayTool.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayTransform.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayUtil.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/OverlayWidget.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/PointerTool.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/PolylineTool.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/SpreadsheetLaunchException.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/SpreadsheetLauncher.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/StatsOptionsPane.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/TextTool.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/overlays/TransientSelectBox.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/BioOption.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/BooleanOption.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/CustomOption.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/Dynamic.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/ListOption.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/NumericOption.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/OptionManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/OptionPane.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/ProgramState.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/ResolutionOption.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/ResolutionToggleOption.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/SaveException.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/Saveable.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/SpreadsheetLaunchOption.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/SpreadsheetOptionStrategy.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/StateManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/state/StringOption.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/BioArrowButton.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/BioComboBox.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/BreakawayPanel.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/BrowserLauncher.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/ColorUtil.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/DataUtil.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/DialogPane.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/DisplayUtil.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/Docker.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/FontChooserPane.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/FormsUtil.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/ImageJUtil.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/InstanceServer.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/LAFUtil.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/MathUtil.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/MessagePane.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/ObjectUtil.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/OutputConsole.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/OutputEvent.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/OutputListener.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/Segment2D.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/SpawnEvent.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/SpawnListener.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/SplashScreen.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/SwingUtil.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/WarningPane.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/WizardPane.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/util/XMLUtil.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/BioColorWidget.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/BioSlideWidget.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/CaptureHandler.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/CapturePanel.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/ColorHandler.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/ColorPane.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayControls.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayManager.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayPosition.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/DisplayWindow.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/SliceToggler.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/StackHandler.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/StackLink.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/StackPanel.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/TransformHandler.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/TransformLink.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/TransformPanel.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/ViewHandler.java (modified) * trunk/projects/visbio/src/main/java/loci/visbio/view/ViewPanel.java (modified) * trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/DummyImageTransform.java (modified) * trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/DummyOverlayTransform.java (modified) * trunk/projects/visbio/src/test/java/loci/visbio/utests/overlays/OverlayNodedObjectTest.java (modified) * trunk/projects/visbio/src/test/java/loci/visbio/utests/util/MathUtilTest.java (modified) * trunk/projects/visbio/src/test/java/loci/visbio/utests/util/Segment2DTest.java (modified) * trunk/projects/wiscscan-java/src/main/java/loci/wiscscan/XSLTTools.java (modified) * trunk/projects/wiscscan-java/src/main/java/loci/wiscscan/auth/AutoLoginHandler.java (modified) * trunk/projects/wiscscan-java/src/main/java/loci/wiscscan/auth/Credentials.java (modified) * trunk/projects/wiscscan-java/src/main/java/loci/wiscscan/auth/KerberosAuth.java (modified) Clean up headers, and add a script to check them. Sat, 05 Mar 2011 21:36:27 GMT curtis [7640] * trunk/projects/utils/src/main/java/CompareTrees.java (modified) * trunk/projects/utils/src/main/java/EditDistance.java (modified) * trunk/projects/utils/src/main/java/LineLength.java (modified) * trunk/projects/utils/src/main/java/TestMem.java (modified) * trunk/projects/utils/src/main/java/UniqueTraces.java (modified) Fix some Eclipse warnings. Tue, 01 Feb 2011 15:45:48 GMT curtis [7612] * trunk/legacy/jvmlink/pom.xml (modified) * trunk/legacy/multi-lut/pom.xml (modified) * trunk/pom.xml (modified) * trunk/projects/curve-fitter/pom.xml (modified) * trunk/projects/deep-zoom-plugin/pom.xml (modified) * trunk/projects/flow-cytometry/pom.xml (modified) * trunk/projects/jar2lib/pom.xml (modified) * trunk/projects/loci-checks/pom.xml (modified) * trunk/projects/misc-plugins/pom.xml (modified) * trunk/projects/slim-curve/pom.xml (modified) * trunk/projects/slim-plotter/pom.xml (modified) * trunk/projects/slim-plugin/pom.xml (modified) * trunk/projects/utils/pom.xml (modified) * trunk/projects/visbio/pom.xml (modified) Serve Maven artifacts using Apache on port 80. Previously it was done ... Thu, 27 Jan 2011 04:25:13 GMT curtis [7595] * trunk/legacy/jvmlink/pom.xml (modified) * trunk/legacy/multi-lut/pom.xml (modified) * trunk/pom.xml (modified) * trunk/pom/loci-base.pom (deleted) * trunk/projects/curve-fitter/pom.xml (modified) * trunk/projects/deep-zoom-plugin/pom.xml (modified) * trunk/projects/flow-cytometry/pom.xml (modified) * trunk/projects/jar2lib/pom.xml (modified) * trunk/projects/loci-checks/pom.xml (modified) * trunk/projects/misc-plugins/pom.xml (modified) * trunk/projects/slim-curve/pom.xml (modified) * trunk/projects/slim-plotter/pom.xml (modified) * trunk/projects/slim-plugin/pom.xml (modified) * trunk/projects/utils/pom.xml (modified) * trunk/projects/visbio/pom.xml (modified) Fix up LOCI Software POM structure. Wed, 26 Jan 2011 04:43:16 GMT curtis [7587] * branches/maven (deleted) * branches/maven/legacy/ome-editor (deleted) * branches/maven/legacy/ome-notes (deleted) * branches/maven/projects/autogen (deleted) * branches/maven/projects/bio-formats (deleted) * branches/maven/projects/loci-common (deleted) * branches/maven/projects/loci-plugins (deleted) * branches/maven/projects/loci-tools (deleted) * branches/maven/projects/ome-io (deleted) * branches/maven/projects/ome-plugins (deleted) * branches/maven/projects/ome-tools (deleted) * branches/maven/projects/ome-xml (deleted) * branches/maven/projects/test-suite (deleted) * trunk/ant (deleted) * trunk/build.xml (deleted) * trunk/checkstyle.xml (deleted) * trunk/components (deleted) * trunk/excludebugs.xml (deleted) * trunk/jar (deleted) * trunk/legacy (copied) * trunk/lib (deleted) * trunk/pom (copied) * trunk/pom.xml (copied) * trunk/projects (copied) * trunk/scan-deps.pl (deleted) * trunk/tools (deleted) * trunk/utils (deleted) Remove Bio-Formats projects, and merge Maven branch. Bio-Formats has ... Fri, 10 Dec 2010 22:32:53 GMT curtis [7399] * branches/maven/forks/jai/pom.xml (modified) * branches/maven/forks/mdbtools/pom.xml (modified) * branches/maven/forks/poi/pom.xml (modified) * branches/maven/legacy/jvmlink/pom.xml (modified) * branches/maven/legacy/multi-lut/pom.xml (modified) * branches/maven/legacy/ome-editor/pom.xml (modified) * branches/maven/legacy/ome-notes/pom.xml (modified) * branches/maven/pom.xml (modified) * branches/maven/pom/loci-base.pom (modified) * branches/maven/projects/bio-formats/pom.xml (modified) * branches/maven/projects/curve-fitter/pom.xml (modified) * branches/maven/projects/deep-zoom-plugin/pom.xml (modified) * branches/maven/projects/flow-cytometry/pom.xml (modified) * branches/maven/projects/jar2lib/pom.xml (modified) * branches/maven/projects/loci-checks/pom.xml (modified) * branches/maven/projects/loci-common/pom.xml (modified) * branches/maven/projects/loci-plugins/pom.xml (modified) * branches/maven/projects/loci-tools/pom.xml (modified) * branches/maven/projects/misc-plugins/pom.xml (modified) * branches/maven/projects/ome-io/pom.xml (modified) * branches/maven/projects/ome-plugins/pom.xml (modified) * branches/maven/projects/ome-tools/pom.xml (modified) * branches/maven/projects/ome-xml/pom.xml (modified) * branches/maven/projects/slim-curve/pom.xml (modified) * branches/maven/projects/slim-plotter/pom.xml (modified) * branches/maven/projects/slim-plugin/pom.xml (modified) * branches/maven/projects/test-suite/pom.xml (modified) * branches/maven/projects/utils/pom.xml (modified) * branches/maven/projects/visbio/pom.xml (modified) * branches/maven/stubs/lwf-stubs/pom.xml (modified) Update 3rd party repositories in LOCI base POM.