source: trunk/projects @ 7761

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Diff Rev Age Author Log Message
(edit) @7761   9 years curtis Move assembly descriptor into src/main/assembly.
(edit) @7760   9 years curtis Move JAR plugin config out of default profile.
(edit) @7759   9 years curtis Add maven-nar-plugin version to avoid warnings.
(edit) @7757   9 years hinerm Moved jar name fixing back to Java side of processing With CMake doing …
(edit) @7756   9 years hinerm Fix for CMakeLists.vm - slash correction The code to convert backslashes …
(edit) @7755   9 years hinerm Moved String conversion code to CMake Instead of the Jar2Lib trying to …
(edit) @7754   9 years hinerm Adjusted correction of jar paths The previous fix to correct '\' to '/' …
(edit) @7753   9 years hinerm Removed Jtools reference to dirent.h JTools source was previously …
(edit) @7752   9 years hinerm Jar2Lib now converts "\" to "/" in discovered jar paths On Windows, the …
(edit) @7751   9 years hinerm Modified javaTools library for Windows functionality JTools was …
(edit) @7750   9 years hinerm Added support for building on Windows platforms The CMakeLists.txt …
(edit) @7748   9 years curtis Progress on Prairie TIFF stitching. Seems to work. Single-image TIFFs are …
(edit) @7747   9 years curtis Convert stage coords from microns to pixels.
(edit) @7746   9 years curtis Tweak documentation.
(edit) @7745   9 years curtis Initial version of Prairie TIFF stitching plugin.
(edit) @7744   9 years curtis Improvements to Stitch OME-TIFFs plugin: * Write tile configuration to …
(edit) @7743   9 years hinerm Improved control flow of platform specific installation Previously, …
(edit) @7742   9 years curtis Simple plugin to visualize tile configuration. This is quicker than …
(edit) @7741   9 years aivar Uses ComplexType vs UnsignedShort previously. Added "@Override" where …
(edit) @7740   9 years aivar Misc. changes; took out fakeData and some debugging print outs.
(edit) @7739   9 years curtis First version of OME-TIFF stitching plugin. Calls Bio-Formats to get …
(edit) @7738   9 years curtis Fix up misc_plugins into JAR with plugins.config.
(edit) @7737   9 years aivar Removed code that requires C99 extensions to allow compilation in Visual …
(edit) @7734   9 years hinerm More control allowed in JavaTools The following options were added to …
(edit) @7733   9 years hinerm Updated CMakeLists for OSX + Linux Changes include: *Removed redundant …
(edit) @7732   9 years hinerm Unix builds now default to .so Boost libraries For reasons unknown, …
(edit) @7731   9 years hinerm Fixes for ticket #298 and #654 Ticket #298 fixes: * search for a /jar …
(edit) @7730   9 years curtis Fix SVN path to license files.
(edit) @7729   9 years curtis Add Boost versions up to 1.60.
(edit) @7728   9 years curtis Remove obsolete files. The Bio-Formats C++ bindings build process is now …
(edit) @7727   9 years curtis Link executables to jtools.
(edit) @7726   9 years ealexand This readme should explain the configuration of the cron job on …
(edit) @7725   9 years ealexand These are the files used in the cron job that creates thumbnails of images …
(edit) @7724   9 years curtis Remove executable property from header file.
(edit) @7723   9 years curtis Fix capitalization of Ecf.h when including.
(edit) @7722   9 years curtis Fix capitalization of Ecf.h.
(edit) @7720   9 years aivar Updated GCI_marquardt_global_compute_exps_fn.
(edit) @7719   9 years aivar Fixed tabs. Moved newly added variables to start of method.
(edit) @7718   9 years hinerm * Updated javaTools with future plans * Fixed class path bug
(edit) @7717   9 years hinerm * Removed old (commeted out) code * Corrected some line formatting
(edit) @7716   9 years hinerm Fixed erroneous imglib1 dependencies.
(edit) @7715   9 years aivar Got GCI_marquardt_compute_fn working, in testing it agrees with the old …
(edit) @7714   9 years hinerm Added contributor line to cppwrap
(edit) @7713   9 years hinerm Added jtools library to jar2lib jtools will allow users of jar2lib access …
(edit) @7712   9 years hinerm Removed IOException and Hashtable from jace.h. These are now included via …
(edit) @7711   9 years hinerm Updated cppwrap to allow additions of core Java files and extra CMake …
(edit) @7710   9 years aivar Work in progress.
(edit) @7709   9 years hinerm Updated Jar2Lib to automatically package jars Fix for ticket #172 …
(edit) @7708   9 years aivar Work in progress. Working on GCI_marquardt_compute_fn, code is commented …
(edit) @7707   9 years hinerm Added support for custom core class lists in Jar2Lib Jar2Lib can now …
(edit) @7706   9 years aivar Changed GCI_gauss_jordan to be GCI_solve and GCI_invert. The current …
(edit) @7705   9 years hinerm Added -extras command to Jar2Lib Usage: -extras <path to …
(edit) @7704   9 years aivar Classifiers for 32/64 Windows and PPC/32/64 OSX. Linux is commented out …
(edit) @7703   9 years aivar The maven nar plugin aol for 64-bit windows is amd64-Windows-msvc.
(edit) @7702   9 years aivar Updated to include Windows 7 64-bit.
(edit) @7701   9 years aivar Add complete set of "fileSet" tags.
(edit) @7700   9 years aivar Removed IJ.log debugging message.
(edit) @7699   9 years aivar Removed IJ.log debugging message.
(edit) @7698   9 years aivar Removed IJ.log debugging message.
(edit) @7697   9 years aivar Was using a listener w/o checking for null value first.
(edit) @7696   9 years aivar Getting the quit button to work correctly.
(edit) @7695   9 years aivar Bug: was substituting z for a!
(edit) @7694   9 years aivar Enable the old System.loadLibrary JNA version as well as the new …
(edit) @7693   9 years aivar Include file method signatures weren't up to date. The c file needed to …
(edit) @7692   9 years aivar Changes to get JNI working (vs JNA). Currently has both versions …
(edit) @7691   9 years aivar Changes to get JNI working (vs JNA).
(edit) @7690   9 years aivar Added default profile to build default jar and "with-dependencies" profile …
(edit) @7689   9 years aivar Added default profile to build default jar and "with-libs" profile to …
(edit) @7688   9 years aivar Disabled maven-nar-plugin functionality.
(edit) @7687   9 years aivar Disabled maven-nar-plugin functionality.
(edit) @7686   9 years aivar Added dependency to ij (strange that it built on my system without).
(edit) @7685   9 years aivar I had a slim-curve-1.0-SNAPSHOT.jar in my local repository, Hudson didn't, …
(edit) @7684   9 years aivar Build one big happy jar with native shared libraries.
(edit) @7683   9 years aivar Display critical messages with IJ.log. New style of using …
(edit) @7682   9 years aivar Fit parameters that were fixed were always displayed as black.
(edit) @7681   9 years aivar Fit parameters that were fixed were always displayed as black.
(edit) @7680   9 years curtis Update ImgLib references to use imglib1.
(edit) @7679   9 years aivar Added text document that describes how to build the project under Windows.
(edit) @7678   9 years aivar Visual Studio 2008 when called from Maven wants C89 syntax, not C99.
(edit) @7677   9 years aivar Fixed array out of bounds when grayscale image is zoomed and you click on …
(edit) @7676   9 years curtis Eliminate dependencies on old IJ2 projects.
(edit) @7675   9 years aivar Got rid of the global old_chisquare, it's passed in as a parameter now. …
(edit) @7674   9 years aivar CurveFitData needs to keep track of how many pixels went into each data …
(edit) @7673   9 years aivar CurveFitData needs to keep track of how many pixels went into each data …
(edit) @7672   9 years aivar Loading/using IRFs. Estimate decay cursors.
(edit) @7671   9 years aivar Moved loading an Excitation and setting up the ExcitationPanel to …
(edit) @7670   9 years aivar Removed set/getFree from CurveFitData. This info is invariant per …
(edit) @7669   9 years aivar Don't clobber fixed parameters when doing an RLD to be followed by an LMA.
(edit) @7668   9 years curtis Clean up headers, and add a script to check them.
(edit) @7667   9 years abhinav Add loci-common as compile-time dependency.
(edit) @7666   9 years curtis Remove transformXML method from VisBio XML class.
(edit) @7665   9 years curtis Add utility method for applying XSLT from WiscScan.
(edit) @7664   9 years curtis Clean up headers.
(edit) @7663   9 years aivar Export to text working.
(edit) @7662   9 years abhinav 1. Added a method to use the style-sheet to convert OME-XML to METS(MODS). …
(edit) @7661   9 years aivar Couldn't get browser to load; problem was the directory I was running …
(edit) @7660   9 years aivar Fixed problem when running within NetBeans. Changed all package names to …
(edit) @7659   9 years aivar Fixed problem when running within NetBeans. Changed all package names to …
(edit) @7658   9 years aivar Fixed various bugs. Made export to text better.
(edit) @7657   9 years curtis Silence more Maven warnings.
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