source: trunk/projects @ 7905

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Diff Rev Age Author Log Message
(edit) @7905   8 years curtis Change base POM name to pom-loci This is more consistent with imagej2, …
(edit) @7904   8 years aivar SLIM Plugin: Rewrite of cursor code, tidy up UI and code. In progress.
(edit) @7903   8 years aivar SLIM Plugin: Changing start/stop bin integers to time value doubles to …
(edit) @7902   8 years aivar SLIM Plugin: Tweak to agree with TRI2.
(edit) @7901   8 years aivar SLIM Curve: Work in progress; tweak to agree with TRI2.
(edit) @7900   8 years curtis Fix whitespace
(edit) @7899   8 years melissa Really fix how the artifact lists are built for Maven 2 and 3 r7896
(edit) @7898   8 years melissa Downgrade version of Jace used by cppwrap Jace r61 has some oddities such …
(edit) @7897   8 years kbriney Fixed FileName attribute of UUID tag so that it gives only the file name …
(edit) @7896   8 years melissa Fix cppwrap-maven-plugin to work with Maven 3 We now iterate over all of …
(edit) @7895   8 years fong
(edit) @7894   8 years kbriney Updated dependencies so that injector can call PrairieReader (or other …
(edit) @7893   8 years avivekan small bugfix
(edit) @7892   8 years aivar SLIM Plugin: Work in progress; make sure fits agree with TRI2.
(edit) @7891   8 years aivar SLIM Plugin: Fit start and stop and the new estimate start got moved from …
(edit) @7890   8 years kbriney Fixed validation errors in UUID assignment. Fixed indexing in "FirstC", …
(edit) @7889   8 years aivar Fixed some channel bugs; started Estimator.
(edit) @7888   8 years aivar Fixed some channel bugs; started Estimator.
(edit) @7887   8 years aivar SLIM Plugin: Got multiple channel fitting working.
(edit) @7886   8 years aivar SLIMPlugin: Tidied up a bit. Fixed minor bugs in decay graph, histogram, …
(edit) @7885   8 years kbriney Fixed bug in 3rd regex group in prairie injector
(edit) @7884   8 years curtis Extract planar indices from filename using a regex
(edit) @7883   8 years curtis Add initial version of Prairie OME injection logic Code is still in …
(edit) @7882   8 years curtis Add comment reminding to fix issue with Maven 3.x
(edit) @7881   8 years curtis Add skeleton for Prairie OME-TIFF conversion tool
(edit) @7879   8 years aivar Improved setting the LUT bounds with the histogram tool.
(edit) @7878   8 years aivar Removed annoying printout and IJ.log output.
(edit) @7877   8 years avivekan
(edit) @7876   8 years avivekan java code change to flow...again...edited plugin after meeting with …
(edit) @7875   8 years aivar Continued refactoring. Fitted image working better now.
(edit) @7874   8 years aivar Added 'noise' and 'chi_square_delta' parameters to SLIMCurve calls. Added …
(edit) @7873   8 years aivar Added 'noise' and 'chi_square_delta' parameters to SLIMCurve calls. Added …
(edit) @7872   8 years aivar Added 'noise' and 'chi_square_delta' parameters to EcfWrapper and JNI …
(edit) @7871   8 years avivekan modified flow code and macro
(edit) @7870   8 years avivekan added check for null, accidentally overlooked in previous commit
(edit) @7869   8 years avivekan hopefully working change to getBFParticleAreas(), was previously returning …
(edit) @7868   8 years avivekan
(edit) @7867   8 years aivar Refactoring.
(edit) @7866   8 years aivar Refactoring.
(edit) @7865   8 years aivar Refactoring
(edit) @7864   8 years aivar Refactoring.
(edit) @7863   8 years avivekan
(edit) @7862   8 years aivar Clean up image fitting code.
(edit) @7861   8 years aivar HistogramTool has problems finding the lifetime LUT on Linux when Fiji is …
(edit) @7860   8 years aivar More diagnostics for issue of multiple threads trying to load the native …
(edit) @7859   8 years aivar Bug with synchronization of multiple threads trying to load the native …
(edit) @7858   8 years aivar Starting Chart and CursorLayer/Cursor classes for IJ2, based on SLIMPlugin …
(edit) @7857   8 years aivar When the library loads tidied up logging and synchronized for …
(edit) @7856   8 years aivar Simplified the platform specific paths from "x86_64-MacOSX-gpp" to …
(edit) @7855   8 years aivar Took out '<arch>i386</arch>' in nar plugin configuration. Was a remnant …
(edit) @7854   8 years chainani fixed some scifio issue
(edit) @7853   8 years aivar Added a "with-libs" profile in POM and associated assembly.
(edit) @7852   8 years avivekan
(edit) @7851   8 years aivar Was a problem in the channel UI fitting images w/o channels.
(edit) @7850   8 years aivar Changed the hardcoded LUT path from platform specific to IJ relative.
(edit) @7849   8 years aivar New Lifetime LUT.
(edit) @7848   8 years aivar SLIMPlugin: shows colorized range of values using 254 color palette.
(edit) @7847   8 years aivar Format doubles to given number of digits. Entering new start/stop text …
(edit) @7846   8 years aivar Rearrange ui panel layout.
(edit) @7845   8 years aivar Got 254 color palette working in histogram color bar.
(edit) @7844   8 years aivar Added a PaletteFix class with static methods to aid in working with 254 …
(edit) @7843   8 years aivar Use 254 color LUTs
(edit) @7842   8 years aivar UI panel now has noise model, fitted images, and chi square target
(edit) @7841   8 years aivar Gets the noise model to the fitter.
(edit) @7840   8 years aivar OutputImageParser added
(edit) @7839   8 years aivar UI Changes
(edit) @7838   8 years aivar Continued work on histogram, add fields to user interface.
(edit) @7837   8 years aivar Still working on fitted images, starting UI changes
(edit) @7836   8 years aivar Added cursors to histogram to change LUT ranges.
(edit) @7835   8 years aivar Fixed bug that killed Jenkins compile
(edit) @7834   8 years aivar Working on histogram
(edit) @7833   8 years aivar Still working on fitted images.
(edit) @7832   8 years aivar Shows fitted images. Needs work & buggy.
(edit) @7831   8 years aivar Shows fitted images. Needs work & buggy.
(edit) @7830   8 years aivar Can now display selection of fitted images; buggy.
(edit) @7829   8 years aivar FLIMImageFitter is coming along
(edit) @7828   8 years aivar Working on the FittedImageManager that will build output fitted images.
(edit) @7827   8 years avivekan Flow update. still testing…
(edit) @7826   8 years aivar Deleted some junk.
(edit) @7825   8 years aivar Misc work in progress
(edit) @7824   8 years aivar Miscellaneous work in progress.
(edit) @7823   8 years paulbarber Unnecessary define.
(edit) @7822   8 years curtis Update to SezPoz 1.9 This matches the version we are using in ImageJ2.
(edit) @7821   8 years aivar Experimented with MyFloatProcessor and DataColorizer2 to get IJ LUTs …
(edit) @7811   8 years aivar Got the new style fitting engine working. Bit of a hack; SLIMProcessor …
(edit) @7810   8 years aivar Got rid of the idea of creating an ICurveFitter for each fit type (i.e. …
(edit) @7809   8 years paulbarber Better comments on why the convolution is actually correct. Fixed one …
(edit) @7807   8 years aivar Work in progress, refactoring fit process
(edit) @7806   8 years aivar Working on calling the curvefitter
(edit) @7805   8 years aivar Added 'imagej.slim' package files from my local TestFittingEngineConcepts …
(edit) @7804   8 years aivar Don't pop up multiple DecayGraphs
(edit) @7803   8 years paulbarber Fixed some memory leaks and some compile warnings.
(edit) @7802   8 years fong
(edit) @7799   8 years curtis Standardize order of exception handling.
(edit) @7798   8 years curtis Add checkbox for toggling parallel projection.
(edit) @7797   8 years paulbarber Increased MAXBINS for a test. Really should check that bins does not …
(edit) @7796   8 years aivar Added "refactor" package to avoid conflicts. Tidy up DecayGraph and allow …
(edit) @7795   8 years aivar Emulate TRI2 parameter estimation.
(edit) @7794   8 years aivar Better handle ICS excitation files.
(edit) @7793   8 years curtis Add SVN ignore rules for visbio-plugins project.
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