source: trunk @ 2906

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Diff Rev Age Author Log Message
(edit) @2906   13 years sorber Added measuring tutorial to built-in help.
(edit) @2905   13 years callan * Optimizations to avoid millions of getSeries() invocations * Optimizing …
(edit) @2904   13 years sorber Reinstated green circles highlighting polyline nodes (OverlayUtil). Added …
(edit) @2903   13 years sorber Incorporated checks into several OverlayNodedObject methods to prevent …
(edit) @2902   13 years melissa Added list of sample data we would like, organized by format.
(edit) @2901   13 years sorber Added JUnit unit tests for MathUtil. Added another vector math method to …
(edit) @2900   13 years sorber Fixed bug in selection layer generation for OverlayNodedObjects exposed by …
(edit) @2899   13 years sorber Corrected over-synchronization causing deadlock.
(edit) @2898   13 years melissa Fixed floating point and RGB images.
(edit) @2897   13 years melissa Fixed bug in byte->short conversion.
(edit) @2896   13 years sorber Synchronized access to node array in OverlayNodedObject.
(edit) @2895   13 years curtis Override setId to clear last image cache.
(edit) @2886   13 years sorber Misc. small changes.
(edit) @2885   13 years sorber Added class FreeformExtension; moved some FreeformTool logic to this …
(edit) @2884   13 years curtis Normalize floating point thumbnails.
(edit) @2883   13 years curtis Clean up code and add javadocs; eliminate reliance on dubious (probably …
(edit) @2882   13 years melissa Ignore problematic color models in makeBuffered.
(edit) @2881   13 years curtis Preview pane component for use with file chooser.
(edit) @2880   13 years melissa ReaderTest now compiles with jikes.
(edit) @2879   13 years melissa Don't assume sizeC == 1 in new ND2 files.
(edit) @2878   13 years melissa Added support for new version of ND2.
(edit) @2877   13 years curtis Add TestNG JAR file to list of external libraries.
(edit) @2876   13 years melissa Fixed a couple of small bugs; updated "what's new" for next release.
(edit) @2875   13 years sorber First try at improving Freeform erasing. Misc. changes to …
(edit) @2874   13 years melissa Updated info on automated testing.
(edit) @2873   13 years melissa Removed debugging statements.
(edit) @2872   13 years melissa Updated testing framework to use TestNG (instead of JUnit); added pixel …
(edit) @2871   13 years melissa Ignore class files; remove unused constants.
(edit) @2870   13 years sorber Fixed omission in floats-to-doubles convenience method.
(edit) @2869   13 years melissa First draft of GUI component that controls cache parameters.
(edit) @2868   13 years sorber Moved method "configureOverlay" from OverlayTool to OverlayTransform.
(edit) @2867   13 years melissa Fixed how ImageTools.splitChannels(byte[], ...) handles multiple bytes per …
(edit) @2866   13 years melissa First draft of cache package.
(edit) @2865   13 years sorber Improved highlighting of freeforms and polylines. Began refactoring …
(edit) @2864   13 years sorber Applied style checks. Removed two print statements from last commit.
(edit) @2863   13 years sorber Improved method for calculating bisector vector. Regrouped methods.
(edit) @2862   13 years melissa Set the length of HTTP streams.
(edit) @2861   13 years melissa Added support for >2GB files; improved metadata parsing and axis size …
(edit) @2860   13 years melissa Added the file name and series name to each image's "info" property.
(edit) @2859   13 years melissa Better logic for removing thumbnails and ROIs from the image count.
(edit) @2858   13 years melissa Populate Image names from the file names stored in the .lei (not the …
(edit) @2857   13 years curtis Fix up Bio-Formats logging to use a simple, common logging infrastructure.
(edit) @2856   13 years curtis Utility for summing together image planes.
(edit) @2855   13 years sorber Added vector math functions.
(edit) @2854   13 years melissa Open images from the correct TIFF file.
(edit) @2853   13 years melissa Update 'whats-new' to reflect last two releases.
(edit) @2844   13 years melissa If there is a TIFF preview, read it instead of the PostScript image.
(edit) @2843   13 years melissa Always use "<filename> - <series name>" window titles.
(edit) @2842   13 years melissa Fixed several smallish bugs.
(edit) @2841   13 years melissa Don't manually register the metadata window with ImageJ's window manager.
(edit) @2840   13 years sorber Additions and changes to help html.
(edit) @2839   13 years melissa Differentiate between default and real acquisition parameters.
(edit) @2838   13 years melissa Fixed serious bugs with uploading to/downloading from OME servers whose …
(edit) @2837   13 years sorber Added method to format paths passed to Runtime.exec()
(edit) @2836   13 years sorber Added missing class StringOption.
(edit) @2835   13 years sorber Added option to toggle automatic spreadsheet launch. Misc small changes to …
(edit) @2834   13 years melissa Always try to use the real series name in the metadata window.
(edit) @2833   13 years melissa Fixed logic for splitting up series-specific metadata.
(edit) @2832   13 years melissa Fixed bug in XML parser that caused most of the instrument settings to be …
(edit) @2831   13 years melissa Added Khoros .xv reader.
(edit) @2830   13 years melissa Speed up calls to setOriginalMetadata.
(edit) @2829   13 years melissa Fixed Java 1.4-specific bug.
(edit) @2828   13 years sorber Removed unnecessary import.
(edit) @2827   13 years sorber Removed dependency on jgoodies.looks classes not in current looks jar.
(edit) @2826   13 years sorber Added basic automatic spreadsheet launching.
(edit) @2825   13 years melissa Check value of "bioformats.forceThumbnails" to determine whether or not to …
(edit) @2824   13 years sorber (sorry) Removed left-over conflict marks.
(edit) @2823   13 years sorber Replaced statistic name strings with constants. Added separate …
(edit) @2822   13 years melissa Save the first image's CustomAttributes when setOriginalMetadata is …
(edit) @2811   13 years melissa Reworked most of the logic in initFile to be more general.
(edit) @2810   13 years curtis Add javadoc for helper class.
(edit) @2809   13 years curtis Fix bug in ZCT coordinate conversions after image planes are done being …
(edit) @2808   13 years curtis Fix bug in Micro Manager close(boolean) method.
(edit) @2807   13 years curtis Fix bug in WiscScan OME-TIFF hack.
(edit) @2806   13 years curtis Eliminate comment filter on long metadata fields (breaks OME-TIFF).
(edit) @2805   13 years melissa Flip images vertically.
(edit) @2804   13 years melissa Eliminated dependency on ImageJ; updated what's new for next release.
(edit) @2803   13 years curtis Fix bug in ImageJ reader with relative path names.
(edit) @2802   13 years melissa Bug fixes.
(edit) @2801   13 years curtis Style.
(edit) @2800   13 years curtis Whitespace.
(edit) @2799   13 years curtis More compact representation of sub-C dimensions.
(edit) @2798   13 years curtis Eliminate no-longer-necessary override of getRGBChannelCount.
(edit) @2797   13 years curtis Only allow setIntensity when no id is set; fix bugs in getSizeC.
(edit) @2796   13 years curtis Move testRead and testConvert into separate ConsoleTools class; eliminate …
(edit) @2795   13 years melissa Finished rpza support.
(edit) @2794   13 years curtis Remove Movie Stitcher targets.
(edit) @2793   13 years melissa Added additional constructors that take an OMENode instead of a file name.
(edit) @2792   13 years melissa Fixed bug with files that have metadata interleaved with pixel data.
(edit) @2791   13 years melissa Added main method to OMEWriter; updated omeul to use OMEWriter.
(edit) @2790   13 years curtis Move Movie Stitcher into Bio-Formats GUI package as "Data Converter."
(edit) @2789   13 years curtis Eliminate some no-longer-necessary exception handling.
(edit) @2788   13 years curtis Simplify some exception handling, and eliminate catch-alls.
(edit) @2787   13 years curtis Fix copyright.
(edit) @2786   13 years curtis Make getZCTCoords and getIndex throw IllegalArgumentException rather than …
(edit) @2785   13 years curtis Split promptId into a separate method for each type of location.
(edit) @2784   13 years curtis More cleanup and modularization of Bio-Formats Importer plugin.
(edit) @2783   13 years melissa Fixed compile error.
(edit) @2782   13 years curtis * Move bzip2-related code to loci.formats.codec package. * No need for …
(edit) @2781   13 years curtis Add LICENSE_PROPERTY constant.
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