source: trunk @ 2966

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Diff Rev Age Author Log Message
(edit) @2966   13 years curtis Eliminate superfluous array allocation from raster/position methods.
(edit) @2965   13 years melissa - Changed default background color, so that all font colors are visible. - …
(edit) @2964   13 years melissa * Removed unnecessary imports from TiffReader. * Cleaned up ZVI reader …
(edit) @2963   13 years curtis Fix compile errors.
(edit) @2962   13 years curtis Tweak.
(edit) @2961   13 years curtis A bunch of work on the caching logic. Still broken though.
(edit) @2960   13 years melissa Converted HighInteger/LowInteger fields to real timestamp.
(edit) @2959   13 years melissa Fixed a couple of NullPointerExceptions, and several bugs in the editor …
(edit) @2958   13 years melissa Allow templates to specify the node number for each node in a map, e.g. if …
(edit) @2957   13 years melissa Added setOriginalMetadataPopulated(boolean) and …
(edit) @2956   13 years melissa Improved population logic.
(edit) @2955   13 years melissa Added searchable text window.
(edit) @2954   13 years curtis * Do not reload preview thumbnail if another used file is selected * …
(edit) @2953   13 years melissa Updated to reflect new cache package structure.
(edit) @2952   13 years melissa Added main method to Cache; fixed package names in sources.
(edit) @2951   13 years melissa Allow sources to be constructed with either a filename or a reader; fixed …
(edit) @2950   13 years curtis No need for package.html, as there are no Java source files in this …
(edit) @2949   13 years curtis Move text documents into doc folder.
(edit) @2948   13 years curtis With only a couple of strategies and sources, it is fine for everything to …
(edit) @2947   13 years curtis Eliminate superfluous Utils class.
(edit) @2946   13 years curtis Update to latest OME-CA2OME.xslt with PixelSizeT -> TimeIncrement bugfix.
(edit) @2945   13 years melissa OME plugin now works with macros.
(edit) @2944   13 years curtis Minor tweaks.
(edit) @2943   13 years melissa Added OME-TIFF reader; removed OME-TIFF logic from TiffReader.
(edit) @2942   13 years melissa Ignore class files.
(edit) @2941   13 years melissa Fixed how CustomImage works with ImageJ < 1.38n.
(edit) @2940   13 years melissa Added TCS reader - turns out we have a multi-plane TCS TIFF after all.
(edit) @2939   13 years melissa Added Visitech and Leica TCS TIFF.
(edit) @2938   13 years melissa Moved all documentation to 'doc' directory.
(edit) @2937   13 years melissa Added new reader for Improvision TIFFs.
(edit) @2936   13 years melissa Fixed channel merging prompt to work with macros.
(edit) @2927   13 years melissa Updated what's new.
(edit) @2926   13 years melissa Added support for 8 bit compressed data.
(edit) @2925   13 years melissa Added Visitech reader; possibly fixed Openlab bug.
(edit) @2924   13 years melissa Added Visitech reader to readers.txt; updated what's new for next release.
(edit) @2923   13 years melissa Removed OriginalMetadata population, for real this time.
(edit) @2922   13 years melissa - Don't automatically populate OriginalMetadata nodes in …
(edit) @2921   13 years melissa Use ij.CompositeImage when possible; fixed a few bugs in CustomImage.
(edit) @2920   13 years curtis Add counts information to FWHM print-out.
(edit) @2919   13 years melissa Don't fail the writeConfig test if the file is invalid.
(edit) @2918   13 years melissa Added method to read a string.
(edit) @2917   13 years melissa Moved MS-RLE codec out of AVIReader.
(edit) @2916   13 years melissa Added multi-series support.
(edit) @2915   13 years melissa Added support for composite image stacks.
(edit) @2914   13 years melissa Cleaned up QuickTime reader - all codec implementations have been moved to …
(edit) @2913   13 years sorber Style checks.
(edit) @2912   13 years sorber Style checks.
(edit) @2911   13 years sorber Reordered API methods for consistency.
(edit) @2910   13 years sorber Reordered OverlayObject API methods for consistency.
(edit) @2909   13 years sorber Added comments to several files in overlays package. Added overlays/test …
(edit) @2908   13 years sorber Added test folder; moved MathUtilTest inside. Added class Segment2D and …
(edit) @2907   13 years sorber Removed accidentally committed testing code.
(edit) @2906   13 years sorber Added measuring tutorial to built-in help.
(edit) @2905   13 years callan * Optimizations to avoid millions of getSeries() invocations * Optimizing …
(edit) @2904   13 years sorber Reinstated green circles highlighting polyline nodes (OverlayUtil). Added …
(edit) @2903   13 years sorber Incorporated checks into several OverlayNodedObject methods to prevent …
(edit) @2902   13 years melissa Added list of sample data we would like, organized by format.
(edit) @2901   13 years sorber Added JUnit unit tests for MathUtil. Added another vector math method to …
(edit) @2900   13 years sorber Fixed bug in selection layer generation for OverlayNodedObjects exposed by …
(edit) @2899   13 years sorber Corrected over-synchronization causing deadlock.
(edit) @2898   13 years melissa Fixed floating point and RGB images.
(edit) @2897   13 years melissa Fixed bug in byte->short conversion.
(edit) @2896   13 years sorber Synchronized access to node array in OverlayNodedObject.
(edit) @2895   13 years curtis Override setId to clear last image cache.
(edit) @2886   13 years sorber Misc. small changes.
(edit) @2885   13 years sorber Added class FreeformExtension; moved some FreeformTool logic to this …
(edit) @2884   13 years curtis Normalize floating point thumbnails.
(edit) @2883   13 years curtis Clean up code and add javadocs; eliminate reliance on dubious (probably …
(edit) @2882   13 years melissa Ignore problematic color models in makeBuffered.
(edit) @2881   13 years curtis Preview pane component for use with file chooser.
(edit) @2880   13 years melissa ReaderTest now compiles with jikes.
(edit) @2879   13 years melissa Don't assume sizeC == 1 in new ND2 files.
(edit) @2878   13 years melissa Added support for new version of ND2.
(edit) @2877   13 years curtis Add TestNG JAR file to list of external libraries.
(edit) @2876   13 years melissa Fixed a couple of small bugs; updated "what's new" for next release.
(edit) @2875   13 years sorber First try at improving Freeform erasing. Misc. changes to …
(edit) @2874   13 years melissa Updated info on automated testing.
(edit) @2873   13 years melissa Removed debugging statements.
(edit) @2872   13 years melissa Updated testing framework to use TestNG (instead of JUnit); added pixel …
(edit) @2871   13 years melissa Ignore class files; remove unused constants.
(edit) @2870   13 years sorber Fixed omission in floats-to-doubles convenience method.
(edit) @2869   13 years melissa First draft of GUI component that controls cache parameters.
(edit) @2868   13 years sorber Moved method "configureOverlay" from OverlayTool to OverlayTransform.
(edit) @2867   13 years melissa Fixed how ImageTools.splitChannels(byte[], ...) handles multiple bytes per …
(edit) @2866   13 years melissa First draft of cache package.
(edit) @2865   13 years sorber Improved highlighting of freeforms and polylines. Began refactoring …
(edit) @2864   13 years sorber Applied style checks. Removed two print statements from last commit.
(edit) @2863   13 years sorber Improved method for calculating bisector vector. Regrouped methods.
(edit) @2862   13 years melissa Set the length of HTTP streams.
(edit) @2861   13 years melissa Added support for >2GB files; improved metadata parsing and axis size …
(edit) @2860   13 years melissa Added the file name and series name to each image's "info" property.
(edit) @2859   13 years melissa Better logic for removing thumbnails and ROIs from the image count.
(edit) @2858   13 years melissa Populate Image names from the file names stored in the .lei (not the …
(edit) @2857   13 years curtis Fix up Bio-Formats logging to use a simple, common logging infrastructure.
(edit) @2856   13 years curtis Utility for summing together image planes.
(edit) @2855   13 years sorber Added vector math functions.
(edit) @2854   13 years melissa Open images from the correct TIFF file.
(edit) @2853   13 years melissa Update 'whats-new' to reflect last two releases.
(edit) @2844   13 years melissa If there is a TIFF preview, read it instead of the PostScript image.
(edit) @2843   13 years melissa Always use "<filename> - <series name>" window titles.
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