source: trunk @ 3171

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Diff Rev Age Author Log Message
(edit) @3171   13 years melissa Make sure to set the appropriate series after calling setId.
(edit) @3170   13 years melissa Fixed how RGB images are handled; added support for indexed color.
(edit) @3169   13 years curtis Update code to use most recent API.
(edit) @3168   13 years curtis Update OME-TIFF conversion program to use most current API.
(edit) @3167   13 years curtis Deal with exceptions from TiffTools.overwriteComment.
(edit) @3166   13 years curtis Use simpler overwriteComment instead of overwriteIFDValue.
(edit) @3165   13 years curtis Update Javadocs.
(edit) @3164   13 years curtis Fix Javadoc links.
(edit) @3163   13 years curtis Export should use tab-delineated, not space-separated, values.
(edit) @3162   13 years melissa Minor bugfixes.
(edit) @3161   13 years melissa Fixed pixel type detection and offset calculation for zlib-compressed …
(edit) @3152   13 years melissa Fixed tiling bug.
(edit) @3151   13 years melissa Bugfixes; final what's new update for next release.
(edit) @3150   13 years melissa Improved Metamorph ND support.
(edit) @3149   13 years melissa Fixed bug with Venu's JP2 file; removed temporary comments from testing …
(edit) @3148   13 years melissa Added SimplePCI reader.
(edit) @3147   13 years curtis Smarter XML validation using SAX to parse out the schema path first.
(edit) @3146   13 years curtis Add Charles's 4D Java apps to archive.
(edit) @3145   13 years curtis Add command line XML validation tool.
(edit) @3144   13 years curtis Add command line tool for indenting XML.
(edit) @3143   13 years curtis Split non-OME-XML-specific XML functionality into separate XMLTools class. …
(edit) @3142   13 years curtis Add macro extensions to what's new list.
(edit) @3141   13 years curtis Tweak what's new.
(edit) @3140   13 years melissa Updated ND2 doc and what's new for next release.
(edit) @3139   13 years melissa Finished indexed color logic.
(edit) @3138   13 years curtis Point command line tools to new locations in loci.formats.tools package.
(edit) @3137   13 years curtis Migrate complex command line tools into their own package, to provide a …
(edit) @3136   13 years curtis Remove comment about CDATA not being handled (since it is now).
(edit) @3135   13 years curtis Add "wavelength" and "time" as prefixes for C and T, respectively. This …
(edit) @3134   13 years melissa Removed debugging stuff.
(edit) @3133   13 years melissa Preliminary support for tiled ZVI images - still need to remove …
(edit) @3132   13 years melissa Marked a bunch of readers as having complete metadata.
(edit) @3131   13 years melissa More work on indexed color stuff; minor bugfixes in ZVI and Perkin Elmer.
(edit) @3130   13 years curtis Add -version command line flag.
(edit) @3129   13 years curtis Whitespace.
(edit) @3128   13 years curtis Fix jikes warnings.
(edit) @3127   13 years melissa Oops, forgot to add IndexedColorModel.
(edit) @3126   13 years melissa For now, attempting to merge/separate indexed images has no effect.
(edit) @3125   13 years melissa Added API methods for working with indexed color images, and implemented …
(edit) @3124   13 years curtis * Preserve existing codec if none has been set using the IFormatWriter …
(edit) @3123   13 years melissa Commented out Motion JPEG-B codec.
(edit) @3122   13 years curtis A simple utility to filter out duplicate stack traces.
(edit) @3121   13 years curtis Fix compile errors.
(edit) @3120   13 years melissa Miscellaneous bugfixes.
(edit) @3119   13 years curtis Latest VisAD library.
(edit) @3118   13 years curtis Initial skeleton for Bio-Formats Metadata Guide.
(edit) @3117   13 years curtis Add link to online Javadocs.
(edit) @3116   13 years curtis Remove unused MetadataStoreException.
(edit) @3115   13 years curtis Add DummyMetadata as default metadata retrieval object. Throw …
(edit) @3114   13 years curtis Rename DummyMetadataStore to DummyMetadata, and implement …
(edit) @3113   13 years melissa Fixed offset calculation heuristic.
(edit) @3112   13 years curtis Remove unnecessary createRoot calls.
(edit) @3111   13 years curtis Fix more compile errors.
(edit) @3110   13 years curtis Fix more compile errors.
(edit) @3109   13 years melissa Fixed compile errors.
(edit) @3108   13 years curtis 1. Cleaned up MetadataStore and MetadataRetrieve interface usage: * …
(edit) @3107   13 years melissa Added support for zlib-compressed pixel data.
(edit) @3106   13 years curtis Clean up isThisType(String, boolean) methods a little bit more.
(edit) @3105   13 years curtis Add notes on loci.formats.ome dependencies; comment out some code.
(edit) @3104   13 years curtis A bunch of miscellaneous bugfixes and tweaks: * Remove some faulty …
(edit) @3103   13 years curtis Fix up spreadsheet process launcher -- but still broken on Mac OS X.
(edit) @3102   13 years curtis Add hack to work around another WiscScan bug.
(edit) @3101   13 years curtis Use exception chaining to preserve root causes of exceptions.
(edit) @3100   13 years melissa Better error messages in the exporter.
(edit) @3099   13 years melissa Added missing import.
(edit) @3098   13 years melissa Fixed how metadata is split between series.
(edit) @3097   13 years curtis Whitespace.
(edit) @3096   13 years curtis Fix bug in buffer allocation.
(edit) @3095   13 years curtis Remove .2, .3 and .4 from valid extensions list.
(edit) @3094   13 years melissa Fixed bug reported by Venu Kesireddy.
(edit) @3093   13 years melissa Fixed Z/T size bug.
(edit) @3092   13 years melissa Fixed to work with omebf.
(edit) @3091   13 years melissa Fixed how custom LUTs are handled in Leica LEI files.
(edit) @3090   13 years curtis Fix XML error with javadoc element.
(edit) @3089   13 years curtis Do not include deprecated methods in Javadoc.
(edit) @3088   13 years curtis Fix the series name fix.
(edit) @3087   13 years curtis More verbose error reporting.
(edit) @3086   13 years curtis Initial skeleton for Bio-Formats ImageJ macro extensions. Several key …
(edit) @3085   13 years curtis Tweak.
(edit) @3084   13 years curtis Add Melissa as an author.
(edit) @3083   13 years curtis Move file grouping constants into format reader interface.
(edit) @3082   13 years curtis Fix bug Christophe Leterrier found with missing series names.
(edit) @3081   13 years curtis Minor UI tweaks.
(edit) @3080   13 years curtis Fix problem with getZCTCoords and getIndex for YX dimension orders.
(edit) @3079   13 years curtis Add option to override dimension order (tests DimensionSwapper class).
(edit) @3078   13 years curtis * Fix bug in dimension swapper with incorrect OME-XML Pixels population. …
(edit) @3077   13 years curtis Reorganize display controls to be tabbed instead of sprawling. This will …
(edit) @3076   13 years melissa Fixed to work with omebf.
(edit) @3075   13 years curtis Fix arbitrary slicing efficiency bug.
(edit) @3074   13 years melissa Preserve user-specified file ordering.
(edit) @3073   13 years melissa Fixed Prairie and ICS readers to work with omebf.
(edit) @3072   13 years curtis Fix typo.
(edit) @3071   13 years curtis Minor tweaks.
(edit) @3070   13 years curtis Update copyright notice to include Abe.
(edit) @3069   13 years curtis Clean up tutorial a little.
(edit) @3068   13 years curtis * Include PNGs for overlays tutorial in VisBio resources. * Remove …
(edit) @3067   13 years curtis Guess at good default opacity settings when volume rendering is first …
(edit) @3066   13 years curtis Disable save check until state logic can be thoroughly fixed.
(edit) @3065   13 years curtis Use reasonable default name when saving or exporting overlay data.
(edit) @3064   13 years curtis Allow 4 range components in ImageFlatField.
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