source: trunk @ 3217

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Diff Rev Age Author Log Message
(edit) @3217   13 years curtis Whitespace.
(edit) @3216   13 years melissa Set metadataComplete flag.
(edit) @3207   13 years curtis Clean up what's new list a bit for October 1 release.
(edit) @3206   13 years melissa Updated what's new for next release.
(edit) @3205   13 years melissa Don't create a StageLabel if all values are null.
(edit) @3204   13 years melissa Removed obsolete 'valid bits' logic; minor cleanup/bugfixes.
(edit) @3203   13 years melissa Don't autoscale images in the data browser.
(edit) @3202   13 years melissa Added support for Photoshop PSD files.
(edit) @3201   13 years curtis Miscellaneous tweaks.
(edit) @3200   13 years curtis Fix some problems with XML validation.
(edit) @3199   13 years curtis Add hack to work around negative SizeZ/C/T values.
(edit) @3198   13 years melissa Added support for uncompressed LIM files.
(edit) @3197   13 years melissa * Added isFalseColor() to IFormatReader API; updated ChannelFiller …
(edit) @3196   13 years melissa Added option to turn off autoscaling.
(edit) @3195   13 years melissa Fixed NPE in get*BitLookupTable().
(edit) @3194   13 years curtis Add printout of indexed color and LUT information to showinf.
(edit) @3193   13 years curtis Print series names in core metadata listing if metadata store is set.
(edit) @3192   13 years curtis Comment out unnecessary imports.
(edit) @3191   13 years melissa Slight speed improvement when reading intensity data.
(edit) @3190   13 years melissa Fixed ClassCastException.
(edit) @3189   13 years melissa Added support for JPEG and RLE-compressed DICOM images.
(edit) @3188   13 years melissa Added hack to compute emission/excitation wavelengths from channel name.
(edit) @3187   13 years curtis Comment out File menu for now.
(edit) @3186   13 years curtis Use AWT menu bar instead of Swing menu bar to avoid Java3D heavyweight …
(edit) @3185   13 years curtis Whitespace.
(edit) @3184   13 years curtis Eliminate jikes warnings.
(edit) @3183   13 years curtis Fix typo in javadoc.
(edit) @3182   13 years curtis Add missing source code links to javadoc.
(edit) @3181   13 years curtis Add ability to save and restore display projections from system clipboard.
(edit) @3180   13 years melissa Added indexed color -> RGB option to ImageInfo; modified …
(edit) @3179   13 years melissa Fixed close() bug.
(edit) @3178   13 years melissa Added utility methods and reader wrapper to expand indexed color images.
(edit) @3177   13 years melissa Added option to reorder stack.
(edit) @3176   13 years melissa Consolidated openImage implementations - haven't tested this on all …
(edit) @3175   13 years melissa Added convenience method for calling setPixels(...) on a MetadataStore.
(edit) @3174   13 years melissa Fixed strip offset calculation for IFDs that are missing strip byte …
(edit) @3173   13 years melissa Fixed bug with getEffectiveSizeC() > 1 and getRGBChannelCount() > 1.
(edit) @3172   13 years melissa Added isIndexed to macro functions.
(edit) @3171   13 years melissa Make sure to set the appropriate series after calling setId.
(edit) @3170   13 years melissa Fixed how RGB images are handled; added support for indexed color.
(edit) @3169   13 years curtis Update code to use most recent API.
(edit) @3168   13 years curtis Update OME-TIFF conversion program to use most current API.
(edit) @3167   13 years curtis Deal with exceptions from TiffTools.overwriteComment.
(edit) @3166   13 years curtis Use simpler overwriteComment instead of overwriteIFDValue.
(edit) @3165   13 years curtis Update Javadocs.
(edit) @3164   13 years curtis Fix Javadoc links.
(edit) @3163   13 years curtis Export should use tab-delineated, not space-separated, values.
(edit) @3162   13 years melissa Minor bugfixes.
(edit) @3161   13 years melissa Fixed pixel type detection and offset calculation for zlib-compressed …
(edit) @3152   13 years melissa Fixed tiling bug.
(edit) @3151   13 years melissa Bugfixes; final what's new update for next release.
(edit) @3150   13 years melissa Improved Metamorph ND support.
(edit) @3149   13 years melissa Fixed bug with Venu's JP2 file; removed temporary comments from testing …
(edit) @3148   13 years melissa Added SimplePCI reader.
(edit) @3147   13 years curtis Smarter XML validation using SAX to parse out the schema path first.
(edit) @3146   13 years curtis Add Charles's 4D Java apps to archive.
(edit) @3145   13 years curtis Add command line XML validation tool.
(edit) @3144   13 years curtis Add command line tool for indenting XML.
(edit) @3143   13 years curtis Split non-OME-XML-specific XML functionality into separate XMLTools class. …
(edit) @3142   13 years curtis Add macro extensions to what's new list.
(edit) @3141   13 years curtis Tweak what's new.
(edit) @3140   13 years melissa Updated ND2 doc and what's new for next release.
(edit) @3139   13 years melissa Finished indexed color logic.
(edit) @3138   13 years curtis Point command line tools to new locations in loci.formats.tools package.
(edit) @3137   13 years curtis Migrate complex command line tools into their own package, to provide a …
(edit) @3136   13 years curtis Remove comment about CDATA not being handled (since it is now).
(edit) @3135   13 years curtis Add "wavelength" and "time" as prefixes for C and T, respectively. This …
(edit) @3134   13 years melissa Removed debugging stuff.
(edit) @3133   13 years melissa Preliminary support for tiled ZVI images - still need to remove …
(edit) @3132   13 years melissa Marked a bunch of readers as having complete metadata.
(edit) @3131   13 years melissa More work on indexed color stuff; minor bugfixes in ZVI and Perkin Elmer.
(edit) @3130   13 years curtis Add -version command line flag.
(edit) @3129   13 years curtis Whitespace.
(edit) @3128   13 years curtis Fix jikes warnings.
(edit) @3127   13 years melissa Oops, forgot to add IndexedColorModel.
(edit) @3126   13 years melissa For now, attempting to merge/separate indexed images has no effect.
(edit) @3125   13 years melissa Added API methods for working with indexed color images, and implemented …
(edit) @3124   13 years curtis * Preserve existing codec if none has been set using the IFormatWriter …
(edit) @3123   13 years melissa Commented out Motion JPEG-B codec.
(edit) @3122   13 years curtis A simple utility to filter out duplicate stack traces.
(edit) @3121   13 years curtis Fix compile errors.
(edit) @3120   13 years melissa Miscellaneous bugfixes.
(edit) @3119   13 years curtis Latest VisAD library.
(edit) @3118   13 years curtis Initial skeleton for Bio-Formats Metadata Guide.
(edit) @3117   13 years curtis Add link to online Javadocs.
(edit) @3116   13 years curtis Remove unused MetadataStoreException.
(edit) @3115   13 years curtis Add DummyMetadata as default metadata retrieval object. Throw …
(edit) @3114   13 years curtis Rename DummyMetadataStore to DummyMetadata, and implement …
(edit) @3113   13 years melissa Fixed offset calculation heuristic.
(edit) @3112   13 years curtis Remove unnecessary createRoot calls.
(edit) @3111   13 years curtis Fix more compile errors.
(edit) @3110   13 years curtis Fix more compile errors.
(edit) @3109   13 years melissa Fixed compile errors.
(edit) @3108   13 years curtis 1. Cleaned up MetadataStore and MetadataRetrieve interface usage: * …
(edit) @3107   13 years melissa Added support for zlib-compressed pixel data.
(edit) @3106   13 years curtis Clean up isThisType(String, boolean) methods a little bit more.
(edit) @3105   13 years curtis Add notes on loci.formats.ome dependencies; comment out some code.
(edit) @3104   13 years curtis A bunch of miscellaneous bugfixes and tweaks: * Remove some faulty …
(edit) @3103   13 years curtis Fix up spreadsheet process launcher -- but still broken on Mac OS X.
(edit) @3102   13 years curtis Add hack to work around another WiscScan bug.
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