source: trunk @ 3271

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Diff Rev Age Author Log Message
(edit) @3271   13 years melissa Corrected image count calculation if we have indexed color planes.
(edit) @3270   13 years melissa Fixed tiling bug and added remaining BigTIFF types.
(edit) @3269   13 years melissa Initial implementation of BigTIFF.
(edit) @3268   13 years melissa Removed several hacks that added an extra blank channel if C == 2.
(edit) @3267   13 years melissa Added new ColorSpace for 2-channel images; updated ImageTools accordingly.
(edit) @3266   13 years melissa Fixed plane number -> IFD mapping for primary file.
(edit) @3265   13 years curtis Clean up and debug image construction methods.
(edit) @3264   13 years curtis Use BYTES_PER_ENTRY instead of hardcoded 12 where relevant.
(edit) @3263   13 years curtis Rename "used" to "usedFiles" so it is easier to search.
(edit) @3262   13 years curtis Remove unnecessary imports.
(edit) @3261   13 years melissa Only parse the primary file once.
(edit) @3260   13 years curtis TiffComment now has a trivial implementation thanks to …
(edit) @3259   13 years curtis * Add TiffTools.getComment convenience method. * Some efficiency …
(edit) @3258   13 years melissa Removed option to force compatible pixel type.
(edit) @3257   13 years curtis Standardize getPixels methods to use a single sample model checker method …
(edit) @3256   13 years curtis Comment out reference to broken makeType method.
(edit) @3255   13 years curtis Comment out reference to broken makeType method.
(edit) @3254   13 years curtis Fix getPixels implementations to never use makeType, and get rid of …
(edit) @3253   13 years melissa All byte array to float array conversions are now handled by …
(edit) @3252   13 years melissa Fixed bug in fake rows per strip calculation.
(edit) @3251   13 years melissa Added default saveBytes implementations. To use saveBytes, a …
(edit) @3250   13 years curtis Disable editing of file path text boxes for now.
(edit) @3249   13 years melissa Fixed pixel type mismatch.
(edit) @3248   13 years melissa Fixed series/currentSeries typo; update file map along with IFD map.
(edit) @3247   13 years melissa Added support for JPEG-compressed ZVI images.
(edit) @3246   13 years melissa Fixed one last bug.
(edit) @3245   13 years melissa Parse XML using SAX.
(edit) @3244   13 years melissa Added option to open each plane in a separate window; fixed CustomImage …
(edit) @3243   13 years curtis Echo status message events to the ImageJ status bar.
(edit) @3242   13 years curtis Add Javadoc for getReorderedIndex.
(edit) @3241   13 years curtis Another status message, indicating parsing of each constituent OME-TIFF …
(edit) @3240   13 years curtis Add status message for each TIFF file checked.
(edit) @3239   13 years melissa Fixed bug with >2GB files.
(edit) @3238   13 years melissa Improved logic for mapping plane numbers to IFDs - scrambled TiffData …
(edit) @3237   13 years melissa Fixed sizeC calculation for RGBA TIFFs.
(edit) @3236   13 years curtis Use, not org.openmicroscopy, for IDs.
(edit) @3235   13 years curtis Fix typo in Pixels IDs.
(edit) @3234   13 years curtis Brief what's new for minor 2007 Oct 5 Bio-Formats release.
(edit) @3233   13 years curtis Fix bug with scramble feature.
(edit) @3232   13 years curtis Fix multi-Image and multi-Pixels TiffData tags; first cut at IFD …
(edit) @3231   13 years curtis Generator now distinguishes between multiple Images vs multiple Pixels.
(edit) @3230   13 years melissa Fixed width/height mismatch detection, TiffData scrambling in single-file …
(edit) @3229   13 years curtis OME-TIFF sample data generator now writes OME-TIFF with multiple series. …
(edit) @3228   13 years curtis Progress on OME-TIFF sample file generator. Currently generates plain …
(edit) @3227   13 years melissa Fixed min TiffData calculation.
(edit) @3226   13 years melissa Look for the smallest TiffData tag, instead of always using the first one.
(edit) @3225   13 years melissa Multi-series OME-TIFF files should now work.
(edit) @3224   13 years curtis Begin work on utility for generating OME-TIFF sample datasets.
(edit) @3223   13 years curtis Gray out time slider when no format reader is specified.
(edit) @3222   13 years curtis Allow null IFormatReader, and add corresponding setImages signature.
(edit) @3221   13 years melissa Only group files if the Image LSID is present, and print warnings if the …
(edit) @3220   13 years melissa Added support for MS Video 1 codec.
(edit) @3219   13 years melissa Fixed how files are grouped.
(edit) @3218   13 years curtis Allow processing from stdin.
(edit) @3217   13 years curtis Whitespace.
(edit) @3216   13 years melissa Set metadataComplete flag.
(edit) @3207   13 years curtis Clean up what's new list a bit for October 1 release.
(edit) @3206   13 years melissa Updated what's new for next release.
(edit) @3205   13 years melissa Don't create a StageLabel if all values are null.
(edit) @3204   13 years melissa Removed obsolete 'valid bits' logic; minor cleanup/bugfixes.
(edit) @3203   13 years melissa Don't autoscale images in the data browser.
(edit) @3202   13 years melissa Added support for Photoshop PSD files.
(edit) @3201   13 years curtis Miscellaneous tweaks.
(edit) @3200   13 years curtis Fix some problems with XML validation.
(edit) @3199   13 years curtis Add hack to work around negative SizeZ/C/T values.
(edit) @3198   13 years melissa Added support for uncompressed LIM files.
(edit) @3197   13 years melissa * Added isFalseColor() to IFormatReader API; updated ChannelFiller …
(edit) @3196   13 years melissa Added option to turn off autoscaling.
(edit) @3195   13 years melissa Fixed NPE in get*BitLookupTable().
(edit) @3194   13 years curtis Add printout of indexed color and LUT information to showinf.
(edit) @3193   13 years curtis Print series names in core metadata listing if metadata store is set.
(edit) @3192   13 years curtis Comment out unnecessary imports.
(edit) @3191   13 years melissa Slight speed improvement when reading intensity data.
(edit) @3190   13 years melissa Fixed ClassCastException.
(edit) @3189   13 years melissa Added support for JPEG and RLE-compressed DICOM images.
(edit) @3188   13 years melissa Added hack to compute emission/excitation wavelengths from channel name.
(edit) @3187   13 years curtis Comment out File menu for now.
(edit) @3186   13 years curtis Use AWT menu bar instead of Swing menu bar to avoid Java3D heavyweight …
(edit) @3185   13 years curtis Whitespace.
(edit) @3184   13 years curtis Eliminate jikes warnings.
(edit) @3183   13 years curtis Fix typo in javadoc.
(edit) @3182   13 years curtis Add missing source code links to javadoc.
(edit) @3181   13 years curtis Add ability to save and restore display projections from system clipboard.
(edit) @3180   13 years melissa Added indexed color -> RGB option to ImageInfo; modified …
(edit) @3179   13 years melissa Fixed close() bug.
(edit) @3178   13 years melissa Added utility methods and reader wrapper to expand indexed color images.
(edit) @3177   13 years melissa Added option to reorder stack.
(edit) @3176   13 years melissa Consolidated openImage implementations - haven't tested this on all …
(edit) @3175   13 years melissa Added convenience method for calling setPixels(...) on a MetadataStore.
(edit) @3174   13 years melissa Fixed strip offset calculation for IFDs that are missing strip byte …
(edit) @3173   13 years melissa Fixed bug with getEffectiveSizeC() > 1 and getRGBChannelCount() > 1.
(edit) @3172   13 years melissa Added isIndexed to macro functions.
(edit) @3171   13 years melissa Make sure to set the appropriate series after calling setId.
(edit) @3170   13 years melissa Fixed how RGB images are handled; added support for indexed color.
(edit) @3169   13 years curtis Update code to use most recent API.
(edit) @3168   13 years curtis Update OME-TIFF conversion program to use most current API.
(edit) @3167   13 years curtis Deal with exceptions from TiffTools.overwriteComment.
(edit) @3166   13 years curtis Use simpler overwriteComment instead of overwriteIFDValue.
(edit) @3165   13 years curtis Update Javadocs.
(edit) @3164   13 years curtis Fix Javadoc links.
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