source: trunk @ 3324

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Diff Rev Age Author Log Message
(edit) @3324   12 years melissa Make sure that window titles are <= 128 chars.
(edit) @3323   12 years melissa Populate PixelSize*, if values exist in metadata; better parsing of …
(edit) @3322   12 years melissa Fixed endianness.
(edit) @3321   12 years melissa * Removed a bunch of unnecessary axis size calculation logic from …
(edit) @3320   12 years melissa Multiple series are now correctly detected; replaced evil axis …
(edit) @3319   12 years curtis Remove unnecessary imports.
(edit) @3318   12 years curtis Typo.
(edit) @3317   12 years curtis Workaround for XML parsing bug with SAX on Windows and Mac OS X.
(edit) @3316   12 years melissa Reorganized MetadataStore population logic - calls to setLogicalChannel …
(edit) @3315   12 years melissa Temporary hack to unbreak openBytes(int, byte[]).
(edit) @3314   12 years curtis Remove unnecessary import.
(edit) @3313   12 years curtis Print exceptions to Results window rather than with IJ.showMessage or …
(edit) @3312   12 years curtis Remove references to the optional package.
(edit) @3311   12 years melissa Removed unnecessary import statements.
(edit) @3310   12 years curtis Add NetCDF libraries to build properties.
(edit) @3309   12 years melissa Added support for Imaris 5.5 (HDF-based).
(edit) @3308   12 years melissa Implemented openBytes(int).
(edit) @3307   12 years melissa Added command-line flags to ImageConverter (-merge, -separate, -stitch, …
(edit) @3306   12 years curtis Fix problem with LuraWave compression.
(edit) @3305   12 years melissa Added stack slicing plugin, which replaces the channel splitting logic in …
(edit) @3304   12 years melissa Better indexed color support in Zeiss LSM.
(edit) @3303   12 years melissa Minor adjustment to offset calculation.
(edit) @3302   12 years melissa Set indexed = false if the lookup table is too small.
(edit) @3301   12 years melissa Temporarily commented out Cinepak logic.
(edit) @3300   12 years melissa Changed TiffIFDEntry's 'offset' field to 'long'; calls to …
(edit) @3299   12 years melissa Alpha channel is now handled correctly.
(edit) @3298   12 years melissa Fixed filename parsing logic.
(edit) @3297   12 years melissa Fixed openBytes(int, byte[]) so it no longer returns all zeros.
(edit) @3296   12 years curtis Print a message if no TIFF comment is found, rather than throwing an …
(edit) @3287   12 years melissa Updated what's new for today's release.
(edit) @3286   12 years melissa Fixed Z/T reversal.
(edit) @3285   12 years melissa If bmpColorsUsed == 0, set it to 2bitsPerPixel.
(edit) @3284   12 years melissa Corrected pixel type for 5-5-5 RGB data.
(edit) @3283   12 years melissa Make sure elementLength/compression indicators are reset.
(edit) @3282   12 years melissa Fixed case logic for setting pixel scale value.
(edit) @3281   12 years melissa Finished logic to correctly handle signed data.
(edit) @3280   12 years melissa Correctly handle signed data.
(edit) @3279   12 years melissa * Added new API method to loci.formats.codec.Codec to allow decompressing …
(edit) @3278   12 years melissa Fixed indexed to RGB conversion.
(edit) @3277   12 years curtis Fix problems with duplicate macro options.
(edit) @3276   12 years melissa * Fixed bug with "open each channel in new window" + "specify range". * …
(edit) @3275   12 years melissa Fixed ZCT calculation for indexed color images.
(edit) @3274   12 years melissa Don't need to manually prepend directory name to file name.
(edit) @3273   12 years curtis Fix little bug in arg parsing.
(edit) @3272   12 years melissa More tiling/BigTIFF fixes.
(edit) @3271   12 years melissa Corrected image count calculation if we have indexed color planes.
(edit) @3270   12 years melissa Fixed tiling bug and added remaining BigTIFF types.
(edit) @3269   12 years melissa Initial implementation of BigTIFF.
(edit) @3268   12 years melissa Removed several hacks that added an extra blank channel if C == 2.
(edit) @3267   12 years melissa Added new ColorSpace for 2-channel images; updated ImageTools accordingly.
(edit) @3266   12 years melissa Fixed plane number -> IFD mapping for primary file.
(edit) @3265   12 years curtis Clean up and debug image construction methods.
(edit) @3264   12 years curtis Use BYTES_PER_ENTRY instead of hardcoded 12 where relevant.
(edit) @3263   12 years curtis Rename "used" to "usedFiles" so it is easier to search.
(edit) @3262   12 years curtis Remove unnecessary imports.
(edit) @3261   12 years melissa Only parse the primary file once.
(edit) @3260   12 years curtis TiffComment now has a trivial implementation thanks to …
(edit) @3259   12 years curtis * Add TiffTools.getComment convenience method. * Some efficiency …
(edit) @3258   12 years melissa Removed option to force compatible pixel type.
(edit) @3257   12 years curtis Standardize getPixels methods to use a single sample model checker method …
(edit) @3256   12 years curtis Comment out reference to broken makeType method.
(edit) @3255   12 years curtis Comment out reference to broken makeType method.
(edit) @3254   12 years curtis Fix getPixels implementations to never use makeType, and get rid of …
(edit) @3253   12 years melissa All byte array to float array conversions are now handled by …
(edit) @3252   12 years melissa Fixed bug in fake rows per strip calculation.
(edit) @3251   12 years melissa Added default saveBytes implementations. To use saveBytes, a …
(edit) @3250   12 years curtis Disable editing of file path text boxes for now.
(edit) @3249   12 years melissa Fixed pixel type mismatch.
(edit) @3248   12 years melissa Fixed series/currentSeries typo; update file map along with IFD map.
(edit) @3247   12 years melissa Added support for JPEG-compressed ZVI images.
(edit) @3246   12 years melissa Fixed one last bug.
(edit) @3245   12 years melissa Parse XML using SAX.
(edit) @3244   12 years melissa Added option to open each plane in a separate window; fixed CustomImage …
(edit) @3243   12 years curtis Echo status message events to the ImageJ status bar.
(edit) @3242   12 years curtis Add Javadoc for getReorderedIndex.
(edit) @3241   12 years curtis Another status message, indicating parsing of each constituent OME-TIFF …
(edit) @3240   12 years curtis Add status message for each TIFF file checked.
(edit) @3239   12 years melissa Fixed bug with >2GB files.
(edit) @3238   12 years melissa Improved logic for mapping plane numbers to IFDs - scrambled TiffData …
(edit) @3237   12 years melissa Fixed sizeC calculation for RGBA TIFFs.
(edit) @3236   12 years curtis Use, not org.openmicroscopy, for IDs.
(edit) @3235   12 years curtis Fix typo in Pixels IDs.
(edit) @3234   12 years curtis Brief what's new for minor 2007 Oct 5 Bio-Formats release.
(edit) @3233   12 years curtis Fix bug with scramble feature.
(edit) @3232   12 years curtis Fix multi-Image and multi-Pixels TiffData tags; first cut at IFD …
(edit) @3231   12 years curtis Generator now distinguishes between multiple Images vs multiple Pixels.
(edit) @3230   12 years melissa Fixed width/height mismatch detection, TiffData scrambling in single-file …
(edit) @3229   12 years curtis OME-TIFF sample data generator now writes OME-TIFF with multiple series. …
(edit) @3228   12 years curtis Progress on OME-TIFF sample file generator. Currently generates plain …
(edit) @3227   12 years melissa Fixed min TiffData calculation.
(edit) @3226   12 years melissa Look for the smallest TiffData tag, instead of always using the first one.
(edit) @3225   12 years melissa Multi-series OME-TIFF files should now work.
(edit) @3224   12 years curtis Begin work on utility for generating OME-TIFF sample datasets.
(edit) @3223   12 years curtis Gray out time slider when no format reader is specified.
(edit) @3222   12 years curtis Allow null IFormatReader, and add corresponding setImages signature.
(edit) @3221   12 years melissa Only group files if the Image LSID is present, and print warnings if the …
(edit) @3220   13 years melissa Added support for MS Video 1 codec.
(edit) @3219   13 years melissa Fixed how files are grouped.
(edit) @3218   13 years curtis Allow processing from stdin.
(edit) @3217   13 years curtis Whitespace.
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