source: trunk @ 7799

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Diff Rev Age Author Log Message
(edit) @7799   8 years curtis Standardize order of exception handling.
(edit) @7798   8 years curtis Add checkbox for toggling parallel projection.
(edit) @7797   8 years paulbarber Increased MAXBINS for a test. Really should check that bins does not …
(edit) @7796   8 years aivar Added "refactor" package to avoid conflicts. Tidy up DecayGraph and allow …
(edit) @7795   8 years aivar Emulate TRI2 parameter estimation.
(edit) @7794   8 years aivar Better handle ICS excitation files.
(edit) @7793   8 years curtis Add SVN ignore rules for visbio-plugins project.
(edit) @7792   8 years curtis Eliminate hardcoded reference to MouseBehaviorJ3D. This fixes a …
(edit) @7791   8 years curtis Fix snapshot feature to actually work. VisAD snapshots can only be done …
(edit) @7790   8 years curtis Normalize color scale ranges.
(edit) @7789   8 years curtis Add bounding box toggle and snapshot features.
(edit) @7788   8 years curtis Use a finer grained stretch step.
(edit) @7787   8 years curtis Use newer version of ImageJ.
(edit) @7786   8 years curtis Remove obsolete TODO.
(edit) @7785   8 years curtis Better handling of hyperstacks.
(edit) @7784   8 years curtis Start window as tall as reasonably possible.
(edit) @7783   8 years curtis Expand stretch range.
(edit) @7782   8 years curtis First version of Ortho Stack VisBio plugin.
(edit) @7781   8 years paulbarber Added GPL license to all source code.
(edit) @7780   8 years aivar Tidied up.
(edit) @7779   8 years aivar Go back to using Gaussian method to solve and invert matrices.
(edit) @7778   8 years aivar Fixed bug in NOISE_MLE case.
(edit) @7777   8 years hinerm Fixed append in Windows directory search Previously was appending ".*" to …
(edit) @7776   8 years hinerm Fixed jace-runtime.jar copy path The previous path to copy …
(edit) @7775   8 years hinerm Added Build path consideration to EXE files The templated code for exe …
(edit) @7774   8 years hinerm Removed StringEscapeUtils reference It was found that erroneous string …
(edit) @7773   8 years hinerm Removed File usage from automation of CMakeLists.txt The use of a File …
(edit) @7772   8 years hinerm Added StringEscapeUtils to Jar2Lib Added a new dependency from the …
(edit) @7771   8 years curtis Normalize Z coordinates as well.
(edit) @7770   8 years curtis Move assembly descriptor into src/main/assembly.
(edit) @7769   8 years hinerm updated fixLibraryPath J2L method Attempting to use replaceAll method …
(edit) @7768   8 years hinerm Updated J2L jar path conversion method The J2L method for conversion will …
(edit) @7767   8 years hinerm Added new method to J2L to fix jar paths A new method was added as part …
(edit) @7766   8 years curtis Move JAR plugin config out of default profile.
(edit) @7765   8 years curtis Remove superfluous slim-curve dependency.
(edit) @7764   8 years hinerm Added extra level of escape ('\') for jar file conversions A single level …
(edit) @7763   8 years hinerm Bug fix in CMakeLists: empty variable The CMakeLists.vm included …
(edit) @7762   8 years curtis Fix with-libs profile to include Java class files. Still doesn't include …
(edit) @7761   8 years curtis Move assembly descriptor into src/main/assembly.
(edit) @7760   8 years curtis Move JAR plugin config out of default profile.
(edit) @7759   8 years curtis Add maven-nar-plugin version to avoid warnings.
(edit) @7758   8 years curtis Add explicit versions to avoid Maven 3 warnings.
(edit) @7757   8 years hinerm Moved jar name fixing back to Java side of processing With CMake doing …
(edit) @7756   8 years hinerm Fix for CMakeLists.vm - slash correction The code to convert backslashes …
(edit) @7755   8 years hinerm Moved String conversion code to CMake Instead of the Jar2Lib trying to …
(edit) @7754   8 years hinerm Adjusted correction of jar paths The previous fix to correct '\' to '/' …
(edit) @7753   8 years hinerm Removed Jtools reference to dirent.h JTools source was previously …
(edit) @7752   8 years hinerm Jar2Lib now converts "\" to "/" in discovered jar paths On Windows, the …
(edit) @7751   8 years hinerm Modified javaTools library for Windows functionality JTools was …
(edit) @7750   8 years hinerm Added support for building on Windows platforms The CMakeLists.txt …
(edit) @7749   8 years curtis Fix gitignore rules.
(edit) @7748   8 years curtis Progress on Prairie TIFF stitching. Seems to work. Single-image TIFFs are …
(edit) @7747   8 years curtis Convert stage coords from microns to pixels.
(edit) @7746   8 years curtis Tweak documentation.
(edit) @7745   8 years curtis Initial version of Prairie TIFF stitching plugin.
(edit) @7744   8 years curtis Improvements to Stitch OME-TIFFs plugin: * Write tile configuration to …
(edit) @7743   8 years hinerm Improved control flow of platform specific installation Previously, …
(edit) @7742   8 years curtis Simple plugin to visualize tile configuration. This is quicker than …
(edit) @7741   8 years aivar Uses ComplexType vs UnsignedShort previously. Added "@Override" where …
(edit) @7740   8 years aivar Misc. changes; took out fakeData and some debugging print outs.
(edit) @7739   8 years curtis First version of OME-TIFF stitching plugin. Calls Bio-Formats to get …
(edit) @7738   8 years curtis Fix up misc_plugins into JAR with plugins.config.
(edit) @7737   8 years aivar Removed code that requires C99 extensions to allow compilation in Visual …
(edit) @7736   8 years curtis Add gitignore file, for those using git-svn.
(edit) @7735   8 years curtis Move some POM descriptors to Bio-Formats Git repo.
(edit) @7734   8 years hinerm More control allowed in JavaTools The following options were added to …
(edit) @7733   8 years hinerm Updated CMakeLists for OSX + Linux Changes include: *Removed redundant …
(edit) @7732   8 years hinerm Unix builds now default to .so Boost libraries For reasons unknown, …
(edit) @7731   8 years hinerm Fixes for ticket #298 and #654 Ticket #298 fixes: * search for a /jar …
(edit) @7730   9 years curtis Fix SVN path to license files.
(edit) @7729   9 years curtis Add Boost versions up to 1.60.
(edit) @7728   9 years curtis Remove obsolete files. The Bio-Formats C++ bindings build process is now …
(edit) @7727   9 years curtis Link executables to jtools.
(edit) @7726   9 years ealexand This readme should explain the configuration of the cron job on …
(edit) @7725   9 years ealexand These are the files used in the cron job that creates thumbnails of images …
(edit) @7724   9 years curtis Remove executable property from header file.
(edit) @7723   9 years curtis Fix capitalization of Ecf.h when including.
(edit) @7722   9 years curtis Fix capitalization of Ecf.h.
(edit) @7721   9 years curtis Remove unnecessary repositories.
(edit) @7720   9 years aivar Updated GCI_marquardt_global_compute_exps_fn.
(edit) @7719   9 years aivar Fixed tabs. Moved newly added variables to start of method.
(edit) @7718   9 years hinerm * Updated javaTools with future plans * Fixed class path bug
(edit) @7717   9 years hinerm * Removed old (commeted out) code * Corrected some line formatting
(edit) @7716   9 years hinerm Fixed erroneous imglib1 dependencies.
(edit) @7715   9 years aivar Got GCI_marquardt_compute_fn working, in testing it agrees with the old …
(edit) @7714   9 years hinerm Added contributor line to cppwrap
(edit) @7713   9 years hinerm Added jtools library to jar2lib jtools will allow users of jar2lib access …
(edit) @7712   9 years hinerm Removed IOException and Hashtable from jace.h. These are now included via …
(edit) @7711   9 years hinerm Updated cppwrap to allow additions of core Java files and extra CMake …
(edit) @7710   9 years aivar Work in progress.
(edit) @7709   9 years hinerm Updated Jar2Lib to automatically package jars Fix for ticket #172 …
(edit) @7708   9 years aivar Work in progress. Working on GCI_marquardt_compute_fn, code is commented …
(edit) @7707   9 years hinerm Added support for custom core class lists in Jar2Lib Jar2Lib can now …
(edit) @7706   9 years aivar Changed GCI_gauss_jordan to be GCI_solve and GCI_invert. The current …
(edit) @7705   9 years hinerm Added -extras command to Jar2Lib Usage: -extras <path to …
(edit) @7704   9 years aivar Classifiers for 32/64 Windows and PPC/32/64 OSX. Linux is commented out …
(edit) @7703   9 years aivar The maven nar plugin aol for 64-bit windows is amd64-Windows-msvc.
(edit) @7702   9 years aivar Updated to include Windows 7 64-bit.
(edit) @7701   9 years aivar Add complete set of "fileSet" tags.
(edit) @7700   9 years aivar Removed IJ.log debugging message.
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