source: trunk @ 7833

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Diff Rev Age Author Log Message
(edit) @7833   8 years aivar Still working on fitted images.
(edit) @7832   8 years aivar Shows fitted images. Needs work & buggy.
(edit) @7831   8 years aivar Shows fitted images. Needs work & buggy.
(edit) @7830   8 years aivar Can now display selection of fitted images; buggy.
(edit) @7829   8 years aivar FLIMImageFitter is coming along
(edit) @7828   8 years aivar Working on the FittedImageManager that will build output fitted images.
(edit) @7827   8 years avivekan Flow update. still testing…
(edit) @7826   8 years aivar Deleted some junk.
(edit) @7825   8 years aivar Misc work in progress
(edit) @7824   8 years aivar Miscellaneous work in progress.
(edit) @7823   8 years paulbarber Unnecessary define.
(edit) @7822   8 years curtis Update to SezPoz 1.9 This matches the version we are using in ImageJ2.
(edit) @7821   8 years aivar Experimented with MyFloatProcessor and DataColorizer2 to get IJ LUTs …
(edit) @7820   8 years mario complete constructors initialize all class-members with sane defaults
(edit) @7819   8 years mario sanity-check some buffer sizes, and use a bit faster readInt() method
(edit) @7818   8 years mario use again a bit stricter types, and use const reference for some …
(edit) @7817   8 years mario added in idea of exception handling between Java and C++ exec methods
(edit) @7816   8 years mario significantly speed up socket writing by using byte-writer method …
(edit) @7815   8 years mario added slightly improved debugging functions
(edit) @7814   8 years mario use auto_ptr for an idea of memory management, and template print …
(edit) @7813   8 years mario added a bit stricter types, and use const reference for strings (instead …
(edit) @7812   8 years mario added minimal changes to compile on a POSIX like OS (mainly Linux)
(edit) @7811   8 years aivar Got the new style fitting engine working. Bit of a hack; SLIMProcessor …
(edit) @7810   8 years aivar Got rid of the idea of creating an ICurveFitter for each fit type (i.e. …
(edit) @7809   8 years paulbarber Better comments on why the convolution is actually correct. Fixed one …
(edit) @7808   8 years mario Exit JVMLinkServer in case of invalid command-line parameters
(edit) @7807   8 years aivar Work in progress, refactoring fit process
(edit) @7806   8 years aivar Working on calling the curvefitter
(edit) @7805   8 years aivar Added 'imagej.slim' package files from my local TestFittingEngineConcepts …
(edit) @7804   8 years aivar Don't pop up multiple DecayGraphs
(edit) @7803   8 years paulbarber Fixed some memory leaks and some compile warnings.
(edit) @7802   8 years fong
(edit) @7801   8 years curtis Update ImageJ1 version to a range. This allows us to keep using newer …
(edit) @7800   8 years curtis Update ImageJ groupId to match the latest.
(edit) @7799   8 years curtis Standardize order of exception handling.
(edit) @7798   8 years curtis Add checkbox for toggling parallel projection.
(edit) @7797   8 years paulbarber Increased MAXBINS for a test. Really should check that bins does not …
(edit) @7796   8 years aivar Added "refactor" package to avoid conflicts. Tidy up DecayGraph and allow …
(edit) @7795   8 years aivar Emulate TRI2 parameter estimation.
(edit) @7794   8 years aivar Better handle ICS excitation files.
(edit) @7793   8 years curtis Add SVN ignore rules for visbio-plugins project.
(edit) @7792   8 years curtis Eliminate hardcoded reference to MouseBehaviorJ3D. This fixes a …
(edit) @7791   8 years curtis Fix snapshot feature to actually work. VisAD snapshots can only be done …
(edit) @7790   8 years curtis Normalize color scale ranges.
(edit) @7789   8 years curtis Add bounding box toggle and snapshot features.
(edit) @7788   8 years curtis Use a finer grained stretch step.
(edit) @7787   8 years curtis Use newer version of ImageJ.
(edit) @7786   8 years curtis Remove obsolete TODO.
(edit) @7785   8 years curtis Better handling of hyperstacks.
(edit) @7784   8 years curtis Start window as tall as reasonably possible.
(edit) @7783   8 years curtis Expand stretch range.
(edit) @7782   8 years curtis First version of Ortho Stack VisBio plugin.
(edit) @7781   8 years paulbarber Added GPL license to all source code.
(edit) @7780   8 years aivar Tidied up.
(edit) @7779   8 years aivar Go back to using Gaussian method to solve and invert matrices.
(edit) @7778   8 years aivar Fixed bug in NOISE_MLE case.
(edit) @7777   8 years hinerm Fixed append in Windows directory search Previously was appending ".*" to …
(edit) @7776   8 years hinerm Fixed jace-runtime.jar copy path The previous path to copy …
(edit) @7775   8 years hinerm Added Build path consideration to EXE files The templated code for exe …
(edit) @7774   8 years hinerm Removed StringEscapeUtils reference It was found that erroneous string …
(edit) @7773   8 years hinerm Removed File usage from automation of CMakeLists.txt The use of a File …
(edit) @7772   8 years hinerm Added StringEscapeUtils to Jar2Lib Added a new dependency from the …
(edit) @7771   8 years curtis Normalize Z coordinates as well.
(edit) @7770   8 years curtis Move assembly descriptor into src/main/assembly.
(edit) @7769   8 years hinerm updated fixLibraryPath J2L method Attempting to use replaceAll method …
(edit) @7768   8 years hinerm Updated J2L jar path conversion method The J2L method for conversion will …
(edit) @7767   8 years hinerm Added new method to J2L to fix jar paths A new method was added as part …
(edit) @7766   8 years curtis Move JAR plugin config out of default profile.
(edit) @7765   8 years curtis Remove superfluous slim-curve dependency.
(edit) @7764   8 years hinerm Added extra level of escape ('\') for jar file conversions A single level …
(edit) @7763   8 years hinerm Bug fix in CMakeLists: empty variable The CMakeLists.vm included …
(edit) @7762   8 years curtis Fix with-libs profile to include Java class files. Still doesn't include …
(edit) @7761   8 years curtis Move assembly descriptor into src/main/assembly.
(edit) @7760   8 years curtis Move JAR plugin config out of default profile.
(edit) @7759   8 years curtis Add maven-nar-plugin version to avoid warnings.
(edit) @7758   8 years curtis Add explicit versions to avoid Maven 3 warnings.
(edit) @7757   8 years hinerm Moved jar name fixing back to Java side of processing With CMake doing …
(edit) @7756   8 years hinerm Fix for CMakeLists.vm - slash correction The code to convert backslashes …
(edit) @7755   8 years hinerm Moved String conversion code to CMake Instead of the Jar2Lib trying to …
(edit) @7754   8 years hinerm Adjusted correction of jar paths The previous fix to correct '\' to '/' …
(edit) @7753   8 years hinerm Removed Jtools reference to dirent.h JTools source was previously …
(edit) @7752   8 years hinerm Jar2Lib now converts "\" to "/" in discovered jar paths On Windows, the …
(edit) @7751   8 years hinerm Modified javaTools library for Windows functionality JTools was …
(edit) @7750   8 years hinerm Added support for building on Windows platforms The CMakeLists.txt …
(edit) @7749   8 years curtis Fix gitignore rules.
(edit) @7748   8 years curtis Progress on Prairie TIFF stitching. Seems to work. Single-image TIFFs are …
(edit) @7747   8 years curtis Convert stage coords from microns to pixels.
(edit) @7746   8 years curtis Tweak documentation.
(edit) @7745   8 years curtis Initial version of Prairie TIFF stitching plugin.
(edit) @7744   8 years curtis Improvements to Stitch OME-TIFFs plugin: * Write tile configuration to …
(edit) @7743   8 years hinerm Improved control flow of platform specific installation Previously, …
(edit) @7742   8 years curtis Simple plugin to visualize tile configuration. This is quicker than …
(edit) @7741   8 years aivar Uses ComplexType vs UnsignedShort previously. Added "@Override" where …
(edit) @7740   8 years aivar Misc. changes; took out fakeData and some debugging print outs.
(edit) @7739   8 years curtis First version of OME-TIFF stitching plugin. Calls Bio-Formats to get …
(edit) @7738   8 years curtis Fix up misc_plugins into JAR with plugins.config.
(edit) @7737   8 years aivar Removed code that requires C99 extensions to allow compilation in Visual …
(edit) @7736   8 years curtis Add gitignore file, for those using git-svn.
(edit) @7735   8 years curtis Move some POM descriptors to Bio-Formats Git repo.
(edit) @7734   8 years hinerm More control allowed in JavaTools The following options were added to …
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