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Component: bio-formats (100 matches)

Ticket Summary Owner Type Status Priority Milestone
#571 Bug when Pump is used in a LightSourceSettings callan defect closed blocker bio-formats-4.2.1
#4 Bio-Formats native solution curtis task closed critical
#68 Test all format readers with omebf melissa task closed critical
#69 Adapt Data Converter into a Bio-Formats export GUI component curtis task closed critical
#82 Better support for writing OME-TIFF, including proposed modifications curtis enhancement closed critical
#94 Eliminate IFormatHandler's ubiquitous "String id" parameter melissa task closed critical
#97 Fix Leica color channel handling melissa defect closed critical
#107 QuickTime mjpb files no longer work melissa defect closed critical
#113 Min/max calculation is incorrect for byte arrays melissa defect closed critical
#114 Bio-Formats cannot handle files larger than 2GB melissa defect closed critical
#148 Do something about large quantities of metadata melissa defect closed critical
#155 PixelSizeT disappears melissa defect closed critical
#171 Improve OME-TIFF grouping logic curtis enhancement closed critical
#198 OME-TIFF files fail with Bio-Formats Importer plugin melissa defect closed critical
#199 Fix exception with new OIB files melissa defect closed critical
#218 Fix memory issue with OLE-based formats melissa defect closed critical
#232 Fix TIFF performance issues melissa defect closed critical
#236 QuickTime resource fork parsing on Mac file systems throws ArithmeticException melissa defect closed critical
#237 Image planes from LegacyQTReader can no longer be displayed melissa defect closed critical
#240 Update OMEROReader to work with 2.3 server melissa defect closed critical
#247 Sequential setId calls with SVSReader can throw an exception melissa defect closed critical
#248 MetamorphTiffReader.isThisType throws NullPointerException on some files melissa defect closed critical
#249 Sequential setId calls with BioRadReader do not fully reset state melissa defect closed critical
#250 Bio-Rad reader throws StringIndexOutOfBoundsException with some XML fragments melissa defect closed critical
#322 Eliminate native library dependencies melissa task closed critical
#343 Fix OME-XML population bugs in FV1000 reader melissa defect closed critical bio-formats-4.0
#346 ND2Reader reports incorrect dimensions melissa defect closed critical bio-formats-4.0
#357 Some TIFFs cannot be read melissa defect closed critical bio-formats-4.0
#372 MetamorphReader does not accurately search for constituent files melissa defect closed critical bio-formats-4.1
#418 Feedback 134: multithreading issue melissa task closed critical bio-formats-4.2
#459 I/O class review melissa task closed critical bio-formats-4.2
#460 Add tests for I/O classes melissa task closed critical bio-formats-4.2
#461 Review build system for testing components in isolation melissa task closed critical bio-formats-4.2
#462 Review logging infrastructure melissa task closed critical bio-formats-4.2
#463 Utility class review melissa task closed critical bio-formats-4.2
#464 Review runtime dependencies melissa task closed critical bio-formats-4.2
#466 Review TIFF parsing logic melissa task closed critical bio-formats-4.2
#492 OME-TIFF reader does not support qualified namespaces melissa defect closed critical bio-formats-4.2
#505 TIFF writer does not support saving tiles whose width is smaller than the full image width melissa defect closed critical bio-formats-5.0
#513 Exporting RGB images to OME-TIFF fails melissa defect closed critical bio-formats-4.2.1
#545 Fix TIFF/OME-TIFF export with JPEG/JPEG-2000 compression melissa defect closed critical bio-formats-4.2.1
#592 Slidebook pixel data is not always correct melissa defect closed critical bio-formats-4.3
#599 Add optimal tile size methods melissa task closed critical bio-formats-4.3
#600 Make sure that JPEG-2000 decoding works in parallel melissa task closed critical bio-formats-4.3
#18 Support for additional dimensions (wrapped into channel) curtis enhancement closed major
#27 Write to SDT format curtis enhancement closed major bio-formats-5.0
#29 Zeiss LSM/MDB bug: "No such method: mdb_open" melissa defect closed major
#55 Support for Volocity format melissa enhancement closed major bio-formats-5.0
#76 011B1_Morph_A01_s1_w1.TIF fails to import into OME using Bio-Formats melissa defect closed major
#83 ArrayIndexOutOfBoundsException in TIFF metadata parsing melissa defect closed major
#91 IPLabReader fails to populate OME-XML metadata store melissa defect closed major
#93 Move IFormatReader.swapDimensions into separate DimensionSwapper delegate melissa enhancement closed major
#98 Add ability to toggle metadata collection melissa enhancement closed major
#100 Investigate ways to minimize VisAD's dependencies on Bio-Formats packages curtis task closed major
#117 Eliminate invalid characters in generated OME-XML melissa defect closed major
#136 Add pixel value check to testing framework melissa enhancement closed major
#144 Fix >2GB ND2 files melissa defect closed major
#151 Multi-series Slidebook support melissa defect closed major
#153 Parse metadata in Leica TCS TIFFs melissa enhancement closed major
#166 LegacyQTReader is broken melissa defect closed major
#168 LegacyQTWriter is broken melissa defect closed major
#175 More cohesive floating point image support melissa enhancement closed major
#178 Add support for Imaris 5.5 melissa enhancement closed major
#182 Fix bug with >2GB LIF files melissa defect closed major
#195 Cannot construct 2-channel images with ImageTools melissa defect closed major
#196 ZVI reader sometimes reverses Z and T dimensions melissa defect closed major
#201 Improve configuration file generator melissa enhancement closed major
#202 Create "Bio-Formats Stack Splitter" plugin curtis task closed major
#203 Some PICT files have incorrect pixel type melissa defect closed major
#204 Support lossless JPEG in DICOM reader melissa enhancement closed major
#210 Better file stitching in BioradReader melissa enhancement closed major
#212 Reading OME-TIFF file with '-nometa' throws exception melissa defect closed major
#214 Add support for InCell1000 HCS format melissa enhancement closed major
#217 Write alternate ND2 reader using Nikon SDK melissa enhancement closed major
#219 Some Slidebook files have incorrect dimensions melissa defect closed major
#220 LZW decoder misbehaves for some LZW-compressed TIFFs melissa defect closed major
#221 Add support for Olympus APL file format melissa enhancement closed major
#228 Add support for writing BigTIFF files melissa enhancement closed major
#229 Support multi-series OME-TIFF export melissa defect closed major
#231 Improve bfconvert melissa enhancement closed major bio-formats-4.1
#235 Add support for new Metamorph format melissa enhancement closed major
#241 More robust channel assignment melissa defect closed major
#242 Turn off NetCDF debugging output melissa task closed major
#243 Thumbnail pixel values are incorrect melissa defect closed major
#244 NullPointerException in GatanReader melissa defect closed major
#245 FV1000 reader dies when analyzing Bio-Rad ROIs melissa defect closed major
#246 Bio-Rad data.raw files are not recognized melissa defect closed major
#251 Bio-Rad reader sometimes looks for an incorrectly named PIC file melissa defect closed major
#255 ICS reader performs poorly with highly multichannel ICS datasets melissa defect closed major
#259 Add support for JPEG2000-compressed SVS files melissa enhancement closed major
#260 omeul doesn't upload original file(s) melissa defect closed major
#261 omeul should upload OME-XML metadata melissa defect closed major
#268 OMEWriter does not save all metadata melissa defect closed major
#269 OMEReader does not read all metadata melissa defect closed major
#270 Thumbnail generation fails with some MNG files melissa defect closed major
#273 Some readers do not have sane file type checking melissa defect closed major
#280 Move ImageJ-specific logic out of OMEUtils melissa defect closed major
#282 Slidebook image names are truncated melissa defect closed major
#284 ZVI reader ignores xy positions beyond the first melissa defect closed major
#285 LSM timestamps not reliably parsed melissa defect closed major
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