Ticket #28 (closed enhancement: moved)

Opened 13 years ago

Last modified 6 years ago

Ability to bin channels together and export to SDT

Reported by: curtis Owned by: nor
Priority: major Milestone:
Component: slim-plotter Severity: serious
Keywords: Cc:
Blocked By: Blocking:

Description (last modified by curtis) (diff)

It would be useful for Slim Plotter to be able to bin together several channels, and export the results to SDT format. For simplicity, first allow any subset of channels to be chosen for the merge, and write a single-channel SDT file containing the results. The naming convention would alter the name of the original filename by appending a descriptor for which channels were merged. For example, if binning channels 3,4,5,7,8,9:

Largeintestine_20x_g800_int2_z2_nd30_pcc-25_pml 2mm_60sec.sdt

becomes

Largeintestine_20x_g800_int2_z2_nd30_pcc-25_pml 2mm_60sec_merged3-5,7-9.sdt

Optionally, the export could also append what shift was used to align the peaks across channels -- i.e., what the maximum peak intensity value was across all channels. Or perhaps it should more explicitly record the shift value used at each channel.

In order to support this feature, SDT writing must first be possible with Bio-Formats; see ticket #27.

Change History

comment:1 Changed 13 years ago by curtis

  • Status changed from new to assigned

comment:2 Changed 13 years ago by curtis

  • Owner curtis deleted
  • Status changed from assigned to new

We also want to be able to "bin down" the lifetime histogram, to make it more coarse, as an alternative option for reducing signal to noise.

comment:3 Changed 13 years ago by curtis

  • Owner set to nor

comment:4 Changed 6 years ago by curtis

  • Status changed from new to closed
  • Resolution set to moved
  • Description modified (diff)
  • Severity set to serious
Note: See TracTickets for help on using tickets.