Ticket #394 (closed defect: fixed)

Opened 11 years ago

Last modified 10 years ago

Flex file metadata objective extraction incorrect

Reported by: gbonamy Owned by: melissa
Priority: major Milestone: bio-formats-4.1
Component: bio-formats Severity: major
Keywords: FLEX Cc:
Blocked By: Blocking:

Description

The objective extraction is incorrect (cf. attached Flex Metadata error.jpg). The FLEX file attached was imaged using the 10X objective.

As per our discussion, the objective selected must be extracted from the image tag and then mapped back to the <objectives></objectives> tags. Similarly ca,eras, lasers, etc. should use the same concept.

Ex. <Images> <Image BufferNo="0"> <ObjectiveRef>10x_Air_UPlanSApo</ObjectiveRef> ...

Should map back to: <Objectives> <Objective ID="10xW_UPlanApo10xW3_NA=0.4"> <Magnification Type="decimal">10.0</Magnification> <NumAperture Type="decimal">0.40</NumAperture> <Immersion Type="decimal">1.33</Immersion> </Objective> ....

Attachments

Flex Metadata error.jpg Download (125.6 KB) - added by gbonamy 11 years ago.
Invalid genaration of the objective used
001001000.xml Download (7.5 KB) - added by gbonamy 11 years ago.
XML portion of the flex file

Change History

Changed 11 years ago by gbonamy

Invalid genaration of the objective used

Changed 11 years ago by gbonamy

XML portion of the flex file

comment:1 Changed 10 years ago by melissa

  • Status changed from new to closed
  • Resolution set to fixed

(In [5155]) * Added getter/setter for Filter.ID to MetadataStore/MetadataRetrieve.

  • Lots of work on Flex metadata support. Closes #394.
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