Ticket #526 (closed enhancement: fixed)

Opened 10 years ago

Last modified 10 years ago

Parse metadata from S-FEG and Helios NanoLab TIFF files

Reported by: curtis Owned by: melissa
Priority: major Milestone: bio-formats-4.2.1
Component: bio-formats Severity: serious
Keywords: Cc: forzaabbott@…
Blocked By: Blocking:


The S-FEG and Helios NanoLab systems store metadata as key/value pairs in TIFF tags 34680 and 34682, respectively.

We should parse these values into the original metadata table. Ideally, we should also standardize the metadata we can as OME-XML.

Sample data can be found in data/tiff/jonathan.

The Set_Scale_from_TIFF.py script shows how to compute physical pixel sizes from the metadata present.

Change History

comment:1 Changed 10 years ago by curtis

  • Cc forzaabbott@… added

comment:2 Changed 10 years ago by melissa

  • Status changed from new to closed
  • Resolution set to fixed

(In [6797]) Added support for FEI TIFF files, specifically those from S-FEG and Helios NanoLab. Closes #526.

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