Ticket #550 (closed defect: fixed)

Opened 9 years ago

Last modified 9 years ago

ScanR reader assumes that wells form a square

Reported by: melissa Owned by: melissa
Priority: major Milestone: bio-formats-4.2.1
Component: bio-formats Severity: serious
Keywords: Cc: ruben.munoz@…
Blocked By: Blocking:

Description

The number of wells acquired in each row is assumed to be either 0, or equal to the number of wells acquired in every other row. Thus, a pattern like this:

 ---------------------------------
 | x | x | x | x | x | x | x | x |
 ---------------------------------
 | x | x | x | x | x | x | x | x |
 ---------------------------------
 |   |   |   |   |   |   |   |   |
 ---------------------------------
 | x | x | x | x | x | x | x | x |
 ---------------------------------

is properly handled, but a pattern like this:

 ---------------------------------
 | x | x | x | x | x | x | x | x |
 ---------------------------------
 | x | x | x | x | x | x | x | x |
 ---------------------------------
 |   |   |   |   | x |   |   |   |
 ---------------------------------
 | x | x | x | x | x | x | x | x |
 ---------------------------------

is not - the ScanR reader will return 4 x 8 = 32 series, with 7 of them containing all black images. It should instead return 25 series.

Change History

comment:1 Changed 9 years ago by melissa

  • Status changed from new to closed
  • Resolution set to fixed

Fixed in r6959.

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