Ticket #562 (closed defect: fixed)

Opened 9 years ago

Last modified 9 years ago

MIAS import fails with NPE

Reported by: melissa Owned by: melissa
Priority: major Milestone: bio-formats-4.2.1
Component: bio-formats Severity: serious
Keywords: Cc: jmoore
Blocked By: Blocking:

Description

Data: /ome/data_repo/from_skyking/mias/frans/NEO-Exp13072008-long-protokol/001-365700055641/

java.lang.NullPointerException
       at loci.formats.in.MIASReader.getChannelColorFromFile(MIASReader.java:793)
       at loci.formats.in.MIASReader.initFile(MIASReader.java:758)
       at loci.formats.FormatReader.setId(FormatReader.java:1074)
       at loci.formats.ImageReader.setId(ImageReader.java:650)
       at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
       at loci.formats.ChannelFiller.setId(ChannelFiller.java:244)
       at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
       at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238)
       at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
       at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:255)
       at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:447)
       at ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:224)
       at ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java:133)
       at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:358)

See also:

Change History

comment:1 Changed 9 years ago by melissa

  • Status changed from new to closed
  • Resolution set to fixed

(In [6953]) Allow MIAS text files to be passed to MIASReader.setId. Closes #562.

comment:2 Changed 9 years ago by melissa

  • Cc jmoore added; josh removed
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