Ticket #646 (closed defect: fixed)

Opened 9 years ago

Last modified 9 years ago

OME-TIFFs cannot be opened in Fiji with file grouping turned on

Reported by: melissa Owned by: melissa
Priority: major Milestone: bio-formats-4.3
Component: bio-formats Severity: serious
Keywords: sprint-1 Cc:
Blocked By: Blocking:

Description

To reproduce:

  • start Fiji
  • select Plugins > LOCI > Bio-Formats Importer
  • select data/test_images_good/ome-tiff/4D-series.ome.tif
  • set "View stack with" to "Hyperstack" and check the "Group files with similar names" option
  • observe the following exception:
java.lang.NullPointerException
	at loci.formats.FileStitcher.getFilePattern(FileStitcher.java:192)
	at loci.plugins.in.ImportProcess.initializeStack(ImportProcess.java:493)
	at loci.plugins.in.ImportProcess.execute(ImportProcess.java:142)
	at loci.plugins.in.Importer.showDialogs(Importer.java:125)
	at loci.plugins.in.Importer.run(Importer.java:77)
	at loci.plugins.LociImporter.run(LociImporter.java:77)
	at ij.IJ.runUserPlugIn(IJ.java:193)
	at ij.IJ.runPlugIn(IJ.java:154)
	at ij.Executer.runCommand(Executer.java:147)
	at ij.Executer.run(Executer.java:78)
	at java.lang.Thread.run(Thread.java:619)

Change History

comment:1 Changed 9 years ago by melissa

  • Status changed from new to closed
  • Resolution set to fixed

(In [7553]) Prevent an NPE when attempting to stitch datasets that aren't stitchable. Closes #646.

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